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* - Fix shebangsamdmi32015-06-111-1/+3
* New port: biology/bcftoolspi2015-06-0610-0/+178
* - Strip binariesamdmi32015-06-041-1/+2
* biology/mafft: update 7.149 -> 7.221robak2015-06-043-8/+7
* - Add NO_ARCHamdmi32015-05-311-0/+1
* - Fix shebangsamdmi32015-05-301-3/+9
* Update Unipro UGENE to version 1.16.2.danfe2015-05-283-3/+5
* Remove $FreeBSD$ from patches files in categories a-j.mat2015-05-227-20/+0
* biology/seaview: Update version 4.5.4=>4.5.4.4bofh2015-05-222-3/+4
* - Update to 7.1.3wen2015-05-184-20/+22
* - Update to 3.6.9 and unbreakwen2015-05-182-5/+3
* MASTER_SITES cleanup.mat2015-05-143-7/+4
* - Update to 5.11.4wen2015-05-123-4/+10
* Cleanup DIST* variables.mat2015-05-121-2/+1
* Reassign biology/ perl modules to perl@.adamw2015-05-098-21/+22
* - Update to 36.3.7awen2015-05-073-6/+11
* biology/seqtools: 4.33 -> 4.34.1pi2015-05-073-3/+7
* Update ports in the [bcd]* categories to not use GH_COMMIT.mat2015-05-064-7/+4
* - Unbreakwen2015-05-042-2/+11
* Mark BROKEN: fails to configureantoine2015-04-281-0/+2
* biology/ncbi-blast+: Add additionl MASTER_SITE to unbreak fetchmarino2015-04-251-3/+2
* ${ENV} does not exist, it is called ${SETENV}.mat2015-04-131-1/+1
* biology/seaview: Unbreak -- it fetches finemarino2015-04-111-4/+1
* biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreakmarino2015-04-112-6/+5
* biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCHmarino2015-04-111-0/+1
* biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreakmarino2015-04-113-15/+15
* Update biology/paml to 4.8a and unbreak.brd2015-04-102-7/+5
* Convert bsd.gnustep.mk to USES=gnustepbapt2015-04-091-4/+2
* Mark as broken unfetchable portsbapt2015-04-0610-0/+18
* biology/ruby-bio: mark broken with ruby 2.2swills2015-04-031-1/+7
* - Remove deprecated optionamdmi32015-04-021-9/+16
* biology/seqtools: 4.32 -> 4.33pi2015-04-012-3/+3
* - Add LICENSEsunpoet2015-03-291-4/+6
* Upgrade from 3.6.6 to 3.6.7. Be sure to not extract the zlibmi2015-03-252-3/+4
* 6 ports categories: Remove $PTHREAD_LIBSmarino2015-03-253-10/+8
* biology/seaview: Update version 4.5.3.4=>4.5.4bofh2015-03-243-41/+5
* - Update to version 1.16.1danfe2015-03-233-8/+8
* biology/segan: Limit GCC to 4.8 while waiting for updatemarino2015-03-211-1/+1
* For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME tobdrewery2015-03-211-2/+2
* Convert to new USE_GITHUB.mat2015-03-202-11/+4
* Fix packaging as a user (pkg already takes care of credentials)bapt2015-03-191-2/+2
* - Simplify MASTER_SITESamdmi32015-03-171-3/+9
* biology/seaview: UNBREAKbofh2015-03-163-15/+38
* Some OCD cleanups on some of the perl@ ports.adamw2015-03-135-984/+976
* - Add empty directory to plistamdmi32015-03-111-0/+1
* Update from 7.1.1 to 7.1.2.mi2015-03-112-3/+3
* Unbreak by upgrading to March 5, 2015 "release" from upstream.mi2015-03-095-106/+103
* Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors willmi2015-03-092-6/+4
* biology/samtools: update 1.1 -> 1.2robak2015-03-062-4/+5
* biology/htslib: update 1.1 -> 1.2.1robak2015-03-066-23/+45
* Add a run dependency used by update_blastdb.plarved2015-03-061-1/+2
* - Update to 1.13.10danilo2015-03-043-4/+4
* Remove Authors from pkg-descrbapt2015-03-031-1/+0
* Remove TEST dependency on p5-Test-Simple when the version in core isadamw2015-02-271-1/+0
* Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).danfe2015-02-243-9/+18
* Mark BROKEN: Fails to link, tries to use internal fltk symbolsantoine2015-02-211-0/+2
* biology/seqtools: 4.31 -> 4.32pi2015-02-122-3/+3
* Mark BROKEN: Checksum and size mismatchantoine2015-01-311-0/+1
* - Update to 3.6.6wen2015-01-313-5/+5
* - Update to 1.13.9danilo2015-01-313-4/+4
* misc/otter & biology/ariadne: Not jobs safemarino2015-01-221-0/+2
* biology/py-biopython:makc2015-01-201-3/+5
* Designatate 4 ports as unsafe for parallel buildingmarino2015-01-201-0/+1
* - Pass maintainership to submitterwen2015-01-191-1/+1
* - Simplify Makefilesunpoet2015-01-192-135/+130
* - Update to 1.13.8danilo2015-01-143-4/+4
* Mark BROKEN: Unfetchableantoine2015-01-101-0/+1
* Update to version 1.15.1.danfe2015-01-063-10/+10
* biology/tinker: 6.2.6 -> 7.0.1pi2015-01-046-65/+94
* - Convert USE_PYTHON -> USES leftovers missed in the previous commitsmva2015-01-041-1/+1
* Update to upstream version 36riggs2015-01-022-7/+6
* Remove expired ports:rene2015-01-017-166/+0
* Fix PKGNAMEPREFIX of biology/ncbi-blast+, so that the resulting package isgrembo2014-12-311-1/+2
* Rename biology/ncbi-blast to biology/ncbi-blast+grembo2014-12-315-2/+2
* - Update to 5.11.0wen2014-12-303-5/+28
* Convert to USES=autoreconfbapt2014-12-291-2/+2
* Bump portrevision after png updatebapt2014-12-263-1/+3
* Change libpng15.so to libpng.so in LIB_DEPENDS to prepare the upgradeantoine2014-12-263-4/+4
* Change my non-FreeBSD MAINTAINER mail to bofh@bofh2014-12-241-1/+1
* Cleanup plistbapt2014-12-217-8/+0
* - Upadate biology/mopac to version 1.15pawel2014-12-176-41/+17
* Samtools implements various utilities for post-processing alignments in thepawel2014-12-168-0/+169
* HTSlib is an implementation of a unified C library for accessing common filepawel2014-12-156-0/+131
* biology/seqtools: 4.30 -> 4.31pi2014-12-142-3/+3
* - Update to 2.39wen2014-12-072-4/+3
* - Update to 0.58wen2014-12-073-8/+9
* - Update to 3.6.5wen2014-12-063-6/+19
* Update to version 1.15.0.danfe2014-12-033-16/+34
* Change the way Perl modules are installed, update the default Perl to 5.18.mat2014-11-2623-125/+125
* biology/seqtools: 4.29 -> 4.30pi2014-11-042-4/+3