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# New ports collection makefile for:    dna-qc
# Date created:             25 Novemeber 2001
# Whom:                 Tony Maher <tonym@biolateral.com.au>
#
# $FreeBSD$
#

PORTNAME=   dna-qc
PORTVERSION=    1993.07.26
CATEGORIES= biology
MASTER_SITES=   ftp://ftp.tigr.org/pub/software/qc/
DISTNAME=   qc
EXTRACT_SUFX=   .tar.Z

MAINTAINER= tonym@biolateral.com.au
COMMENT=    A quality control algorithm for DNA sequencing projects

NO_WRKSUBDIR=   true
USE_REINPLACE=  yes

EXAMPLES=   README script.compare script.limits \
        bact.all chromosomeIII.all human.all worm.all
PROGRAMS=   counter hybridize normalize random_clip random_line

post-patch:
    @${REINPLACE_CMD} -e 's,^CFLAGS,#CFLAGS,' ${WRKSRC}/Makefile
    @${REINPLACE_CMD} -e 's,malloc.h,stdlib.h,' ${WRKSRC}/normalize.c
    @${REINPLACE_CMD} -e 's,fname\*,fname,' ${WRKSRC}/random_line.c
    @${REINPLACE_CMD} -e 's,static void allocate_pool,void allocate_pool,' \
        ${WRKSRC}/stringpool.c

do-install:
.for file in ${PROGRAMS}
    ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin
    strip ${PREFIX}/bin/${file}
.endfor
.if !defined(NOPORTDOCS)
    @${MKDIR} ${DOCSDIR}
    ${INSTALL_DATA} ${WRKSRC}/qc_doc/* ${DOCSDIR}
    ${INSTALL_DATA} ${WRKSRC}/surprize_doc/* ${DOCSDIR}
    @${MKDIR} ${EXAMPLESDIR}
.for file in ${EXAMPLES}
    ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR}
.endfor
.endif

.include <bsd.port.mk>