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| author | makc <makc@FreeBSD.org> | 2013-03-28 21:05:42 +0800 |
|---|---|---|
| committer | makc <makc@FreeBSD.org> | 2013-03-28 21:05:42 +0800 |
| commit | 31a6009625ff651b22ad5165a050e892483b6530 (patch) | |
| tree | 204494b3973199f174a2c9548db7a15917954a22 | |
| parent | c753f7add307bdbcc23e9e9b2fbd3d64a927bb27 (diff) | |
| download | freebsd-ports-gnome-31a6009625ff651b22ad5165a050e892483b6530.tar.gz freebsd-ports-gnome-31a6009625ff651b22ad5165a050e892483b6530.tar.zst freebsd-ports-gnome-31a6009625ff651b22ad5165a050e892483b6530.zip | |
Add new port science/pyteomics:
Pyteomics is a collection of lightweight and handy tools for Python
that help to handle various sorts of proteomics data. Pyteomics
provides a growing set of modules to facilitate the most common
tasks in proteomics data analysis, such as:
* calculation of basic physico-chemical properties of polypeptides:
. mass and isotopic distribution
. charge and pI
. chromatographic retention time
* access to common proteomics data:
. MS or LC-MS data
. FASTA databases
. search engines output
* easy manipulation of sequences of modified peptides and proteins
WWW: https://pypi.python.org/pypi/pyteomics
| -rw-r--r-- | science/Makefile | 1 | ||||
| -rw-r--r-- | science/pyteomics/Makefile | 19 | ||||
| -rw-r--r-- | science/pyteomics/distinfo | 2 | ||||
| -rw-r--r-- | science/pyteomics/pkg-descr | 16 | ||||
| -rw-r--r-- | science/pyteomics/pkg-plist | 39 |
5 files changed, 77 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index dcec5fc23930..f32ce1b10749 100644 --- a/science/Makefile +++ b/science/Makefile @@ -177,6 +177,7 @@ SUBDIR += pybrain SUBDIR += pycdf SUBDIR += pynn + SUBDIR += pyteomics SUBDIR += qcl SUBDIR += qtresistors SUBDIR += ruby-dcl diff --git a/science/pyteomics/Makefile b/science/pyteomics/Makefile new file mode 100644 index 000000000000..41e8bdbc8a73 --- /dev/null +++ b/science/pyteomics/Makefile @@ -0,0 +1,19 @@ +# $FreeBSD$ + +PORTNAME= pyteomics +PORTVERSION= 2.1.3 +CATEGORIES= science python +MASTER_SITES= CHEESESHOP/source/p/${PORTNAME}/ +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= makc@FreeBSD.org +COMMENT= Python modules for proteomics data analysis + +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}lxml>=0:${PORTSDIR}/devel/py-lxml \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>=0:${PORTSDIR}/math/py-matplotlib \ + ${PYNUMPY} + +USE_PYTHON= 2.6+ +USE_PYDISTUTILS= yes + +.include <bsd.port.mk> diff --git a/science/pyteomics/distinfo b/science/pyteomics/distinfo new file mode 100644 index 000000000000..77abe2de854e --- /dev/null +++ b/science/pyteomics/distinfo @@ -0,0 +1,2 @@ +SHA256 (pyteomics-2.1.3.tar.gz) = 1986f5e7e090b7c8872293166219a50f60f475bd2802ad98c399160241f1fd52 +SIZE (pyteomics-2.1.3.tar.gz) = 69609 diff --git a/science/pyteomics/pkg-descr b/science/pyteomics/pkg-descr new file mode 100644 index 000000000000..f30cbd1b1687 --- /dev/null +++ b/science/pyteomics/pkg-descr @@ -0,0 +1,16 @@ +Pyteomics is a collection of lightweight and handy tools for Python +that help to handle various sorts of proteomics data. Pyteomics +provides a growing set of modules to facilitate the most common +tasks in proteomics data analysis, such as: + + * calculation of basic physico-chemical properties of polypeptides: + . mass and isotopic distribution + . charge and pI + . chromatographic retention time + * access to common proteomics data: + . MS or LC-MS data + . FASTA databases + . search engines output + * easy manipulation of sequences of modified peptides and proteins + +WWW: https://pypi.python.org/pypi/pyteomics diff --git a/science/pyteomics/pkg-plist b/science/pyteomics/pkg-plist new file mode 100644 index 000000000000..72622405955e --- /dev/null +++ b/science/pyteomics/pkg-plist @@ -0,0 +1,39 @@ +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.py +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/__init__.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.py +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/achrom.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.py +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/auxiliary.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.py +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/electrochem.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.py +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/fasta.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mass.py +%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mass.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.py +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mgf.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.py +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mzid.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.py +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/mzml.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/parser.py +%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/parser.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.py +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/pepxml.pyo +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.py +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyc +%%PYTHON_SITELIBDIR%%/pyteomics/pylab_aux.pyo +@dirrmtry %%PYTHON_SITELIBDIR%%/pyteomics +@dirrmtry %%PYTHON_SITELIBDIR%% +@dirrmtry %%PYTHON_LIBDIR%% |