diff options
| author | lawrance <lawrance@FreeBSD.org> | 2006-02-10 17:45:28 +0800 |
|---|---|---|
| committer | lawrance <lawrance@FreeBSD.org> | 2006-02-10 17:45:28 +0800 |
| commit | 675499113a2ada9dfd9dc5f4127f22435414def6 (patch) | |
| tree | 9807a992e00ba0ded1c8affee9d4bf7cd4711926 | |
| parent | ca3e6f92ccc7d23b67b5df4f351ea510b074b5cd (diff) | |
| download | freebsd-ports-gnome-675499113a2ada9dfd9dc5f4127f22435414def6.tar.gz freebsd-ports-gnome-675499113a2ada9dfd9dc5f4127f22435414def6.tar.zst freebsd-ports-gnome-675499113a2ada9dfd9dc5f4127f22435414def6.zip | |
Update to 3.27.
Use GCC 3.3 on systems with 3.4, due to an internal compiler error.
PR: ports/93050
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
| -rw-r--r-- | biology/t_coffee/Makefile | 14 | ||||
| -rw-r--r-- | biology/t_coffee/distinfo | 6 | ||||
| -rw-r--r-- | biology/t_coffee/files/patch-Makefile | 8 |
3 files changed, 18 insertions, 10 deletions
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile index 4e5c42e7afd1..c3e1cd994411 100644 --- a/biology/t_coffee/Makefile +++ b/biology/t_coffee/Makefile @@ -7,7 +7,7 @@ # PORTNAME= t_coffee -PORTVERSION= 3.18 +PORTVERSION= 3.27 CATEGORIES= biology MASTER_SITES= http://igs-server.cnrs-mrs.fr/~cnotred/Packages/ DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION} @@ -25,25 +25,25 @@ MAKE_ENV= MV=${MV} USER_BIN=${PREFIX}/bin \ MAKEFILE= makefile do-install: - @ ${INSTALL_PROGRAM} ${WRKSRC}/bin/t_coffee ${PREFIX}/bin + ${INSTALL_PROGRAM} ${WRKSRC}/bin/t_coffee ${PREFIX}/bin post-install: .if !defined(NOPORTDOCS) @ ${MKDIR} ${DOCSDIR} - @ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR} @ ${MKDIR} ${EXAMPLESDIR} @ cd ${WRKSRC}/example && ${FIND} * \ | ${CPIO} --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR} @ ${MKDIR} ${DATADIR} - @ ${INSTALL_DATA} ${WRKSRC}/license.txt ${DATADIR} + ${INSTALL_DATA} ${WRKSRC}/license.txt ${DATADIR} @ ${MKDIR} ${DATADIR}/html - @ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR}/html + ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR}/html .endif .include <bsd.port.pre.mk> -.if ${OSVERSION} >= 600000 -BROKEN= "Does not build on FreeBSD >= 6.x" +.if ${OSVERSION} > 502126 +USE_GCC=3.3 .endif .include <bsd.port.post.mk> diff --git a/biology/t_coffee/distinfo b/biology/t_coffee/distinfo index 4c8f07bac74e..cde81b662a5c 100644 --- a/biology/t_coffee/distinfo +++ b/biology/t_coffee/distinfo @@ -1,3 +1,3 @@ -MD5 (T-COFFEE_distribution_Version_3.18.tar.gz) = e671383b9e6b90ded56c615acd2f51c4 -SHA256 (T-COFFEE_distribution_Version_3.18.tar.gz) = e6769bbfecbcd4a00493564ab8e08aefd0d89c7452e5b30114d0d8aec4d36aee -SIZE (T-COFFEE_distribution_Version_3.18.tar.gz) = 1540558 +MD5 (T-COFFEE_distribution_Version_3.27.tar.gz) = 747d907f4b87e07d7b1e670a2b263e23 +SHA256 (T-COFFEE_distribution_Version_3.27.tar.gz) = ffb7920919b24a6144492bec71580cda8a3ef4698acf762f76ebadfcae9aa01a +SIZE (T-COFFEE_distribution_Version_3.27.tar.gz) = 1295287 diff --git a/biology/t_coffee/files/patch-Makefile b/biology/t_coffee/files/patch-Makefile new file mode 100644 index 000000000000..5cf4496b912f --- /dev/null +++ b/biology/t_coffee/files/patch-Makefile @@ -0,0 +1,8 @@ +--- t_coffee_source/makefile.orig Tue Feb 7 15:11:00 2006 ++++ t_coffee_source/makefile Tue Feb 7 15:10:36 2006 +@@ -1,4 +1,4 @@ +-CC=cc ++#CC=cc + t_coffee: util_constraints_list.o util_job_handling.o util_dps.o util_domain_constraints_list.o util_analyse_constraints_list.o aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_nw.o util_ dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o + $(CC) -o t_coffee util_constraints_list.o util_job_handling.o util_dps.o util_domain_constraints_list.o util_analyse_constraints_list.o aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_ nw.o util_dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o -lm + mv t_coffee ../bin |