In preparation for making libtool generate libraries with a sane name, fix all

LIB_DEPENDS in biology

12 files changed, 19 insertions, 19 deletions

diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 765550050338..6362c0432199 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -31,7 +31,7 @@ USE_FORTRAN=	yes
 
 .if ${PORT_OPTIONS:MSYS_LINALG}
 CONFIGURE_ARGS+=	--enable-sys-linalg
-LIB_DEPENDS+=	atlas.2:${PORTSDIR}/math/atlas
+LIB_DEPENDS+=	libatlas.so:${PORTSDIR}/math/atlas
 .else
 CONFIGURE_ARGS+=	--disable-sys-linalg
 .endif
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
index 6a3b695cffe5..122f9878e49c 100644
--- a/biology/embassy/Makefile
+++ b/biology/embassy/Makefile
@@ -11,7 +11,7 @@ DIST_SUBDIR=	emboss
 MAINTAINER=	wen@FreeBSD.org
 COMMENT=	Collection of contributed EMBOSS applications
 
-LIB_DEPENDS=	nucleus.6:${PORTSDIR}/biology/emboss
+LIB_DEPENDS=	libnucleus.so:${PORTSDIR}/biology/emboss
 
 PREFIX?=	${LOCALBASE}/emboss
 NO_MTREE=	yes
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index a44e339ab1a5..3240f7029406 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -15,8 +15,8 @@ COMMENT=	A collection of open source tools for genetic sequence analysis
 
 BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw \
 		primer3:${PORTSDIR}/biology/primer3
-LIB_DEPENDS=	gd:${PORTSDIR}/graphics/gd \
-		png15:${PORTSDIR}/graphics/png
+LIB_DEPENDS=	libgd.so:${PORTSDIR}/graphics/gd \
+		libpng15.so:${PORTSDIR}/graphics/png
 
 CONFLICTS=	qmail-ldap-[0-9]* digest-[0-9]*
 
@@ -38,8 +38,8 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR}
 .if !defined(WITHOUT_X11)
 USE_XORG=	x11
 USES+=		motif
-LIB_DEPENDS+=	gd:${PORTSDIR}/graphics/gd \
-		png15:${PORTSDIR}/graphics/png
+LIB_DEPENDS+=	libgd.so:${PORTSDIR}/graphics/gd \
+		libpng15.so:${PORTSDIR}/graphics/png
 .else
 CONFIGURE_ARGS+= --without-x
 .endif
diff --git a/biology/iolib/Makefile b/biology/iolib/Makefile
index c47066958bca..5a16d60db4c3 100644
--- a/biology/iolib/Makefile
+++ b/biology/iolib/Makefile
@@ -13,7 +13,7 @@ COMMENT=	General purpose trace file (and Experiment File) reading interface
 
 LICENSE=	BSD
 
-LIB_DEPENDS=	curl:${PORTSDIR}/ftp/curl
+LIB_DEPENDS=	libcurl.so:${PORTSDIR}/ftp/curl
 
 USE_AUTOTOOLS=	libtool:env
 GNU_CONFIGURE=	yes
diff --git a/biology/libsbml/Makefile b/biology/libsbml/Makefile
index 1dc573850884..11a3544135de 100644
--- a/biology/libsbml/Makefile
+++ b/biology/libsbml/Makefile
@@ -11,7 +11,7 @@ DISTNAME=	${PORTNAME}-${PORTVERSION}-src
 MAINTAINER=	wen@FreeBSD.org
 COMMENT=	API Library for Working with SBML File
 
-LIB_DEPENDS=	xml2.5:${PORTSDIR}/textproc/libxml2
+LIB_DEPENDS=	libxml2.so:${PORTSDIR}/textproc/libxml2
 
 OPTIONS_DEFINE=	PYTHON RUBY
 
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 9d5c5c76a083..ad1ab10dfcff 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -12,7 +12,7 @@ DISTNAME=	${PORTNAME}7-${MOPAC_SUBVERSION}
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Semi-empirical (MNDO, etc.) molecular orbital calculation
 
-LIB_DEPENDS=	f2c:${PORTSDIR}/lang/f2c
+LIB_DEPENDS=	libf2c.so:${PORTSDIR}/lang/f2c
 
 USE_GMAKE=	yes
 USE_AUTOTOOLS=	aclocal automake autoconf libtool
diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile
index b9b842319ef1..419220c74e4d 100644
--- a/biology/ortep3/Makefile
+++ b/biology/ortep3/Makefile
@@ -13,7 +13,7 @@ EXTRACT_ONLY=	ortep.tar.Z
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
 
-PGPLOT_LIB_DEPENDS=	pgplot:${PORTSDIR}/graphics/pgplot
+PGPLOT_LIB_DEPENDS=	libpgplot.so:${PORTSDIR}/graphics/pgplot
 
 USE_FORTRAN=	yes
 WRKSRC=		${WRKDIR}/ortep/src
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index 7ee5ad3c7241..3a03a5eee00c 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -13,7 +13,7 @@ COMMENT=	Whole genome association analysis toolset
 
 LICENSE=	GPLv2
 
-LIB_DEPENDS=	lapack:${PORTSDIR}/math/lapack
+LIB_DEPENDS=	liblapack.so:${PORTSDIR}/math/lapack
 
 USE_ZIP=	yes
 USE_GMAKE=	yes
diff --git a/biology/plinkseq/Makefile b/biology/plinkseq/Makefile
index 8d3b9caab28f..2ec0ed1a03cf 100644
--- a/biology/plinkseq/Makefile
+++ b/biology/plinkseq/Makefile
@@ -12,7 +12,7 @@ COMMENT=	Toolset for working with human genetic variation data
 
 LICENSE=	GPLv2
 
-LIB_DEPENDS=	protobuf:${PORTSDIR}/devel/protobuf
+LIB_DEPENDS=	libprotobuf.so:${PORTSDIR}/devel/protobuf
 
 USE_DOS2UNIX=	yes
 USE_LDCONFIG=	yes
diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile
index 52e8e658299b..96b1b18d2b64 100644
--- a/biology/protomol/Makefile
+++ b/biology/protomol/Makefile
@@ -12,9 +12,9 @@ EXTRACT_SUFX=	# empty
 MAINTAINER=	sangwoos@gmail.com
 COMMENT=	OO, component based, framework for molecular dynamics (MD) simulations
 
-LIB_DEPENDS=	png15:${PORTSDIR}/graphics/png \
-		jpeg.11:${PORTSDIR}/graphics/jpeg \
-		tiff.4:${PORTSDIR}/graphics/tiff
+LIB_DEPENDS=	libpng15.so:${PORTSDIR}/graphics/png \
+		libjpeg.so:${PORTSDIR}/graphics/jpeg \
+		libtiff.so:${PORTSDIR}/graphics/tiff
 
 GNU_CONFIGURE=	yes
 USE_XORG=	xmu xt sm ice xext x11 xi
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index b57e88b617a9..905999115534 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -13,8 +13,8 @@ COMMENT=	Free and Open-Source molecular modeling system
 BUILD_DEPENDS=	${PYNUMERIC}
 RUN_DEPENDS=	${PYNUMERIC} \
 		${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw
-LIB_DEPENDS=	png15:${PORTSDIR}/graphics/png \
-		freetype.9:${PORTSDIR}/print/freetype2
+LIB_DEPENDS=	libpng15.so:${PORTSDIR}/graphics/png \
+		libfreetype.so:${PORTSDIR}/print/freetype2
 
 VERSION=	1.5.0.1
 SVNREVISION=	3978
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index ccb78d7e2b16..ef44fd56c58d 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -11,7 +11,7 @@ DISTNAME=	${PORTNAME}_${PORTVERSION}
 MAINTAINER=	ports@FreeBSD.org
 COMMENT=	Multiple DNA/protein sequence alignment editor
 
-LIB_DEPENDS=	fltk:${PORTSDIR}/x11-toolkits/fltk
+LIB_DEPENDS=	libfltk.so:${PORTSDIR}/x11-toolkits/fltk
 
 OPTIONS_DEFINE=	PDFLIB
 OPTIONS_DEFAULT=PDFLIB
@@ -39,7 +39,7 @@ NO_STAGE=	yes
 .include <bsd.port.options.mk>
 
 .if ${PORT_OPTIONS:MPDFLIB}
-LIB_DEPENDS+=	pdf:${PORTSDIR}/print/pdflib
+LIB_DEPENDS+=	libpdf.so:${PORTSDIR}/print/pdflib
 MAKE_ENV+=	LPDF='-L${LOCALBASE}/lib -lpdf'
 .else
 MAKE_ENV+=	PDF_PS_FLAGS='-DNO_PDF'