Upgrade to 1.1. Unfortunately, the tar file is not versioned.

3 files changed, 198 insertions, 193 deletions

diff --git a/math/javanns/Makefile b/math/javanns/Makefile
index 0e0756c234c3..52a6affcccb0 100644
--- a/math/javanns/Makefile
+++ b/math/javanns/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	javanns
-PORTVERSION=	1.0.b
+PORTVERSION=	1.1
 CATEGORIES=	math java
 MASTER_SITES=	http://www-ra.informatik.uni-tuebingen.de/downloads/JavaNNS/
 DISTNAME=	JavaNNS-LinuxIntel
@@ -24,6 +24,11 @@ LIBSDIR?=	${DATADIR}/lib
 NO_WRKSUBDIR=	yes
 NO_BUILD=	yes
 
+post-extract:
+	# Permissions in the tar file are whacked
+	find ${WRKSRC} -type d -print | xargs chmod 755
+	find ${WRKSRC} -type f -print | xargs chmod 644
+
 do-configure:
 	${INSTALL_DATA} ${FILESDIR}/javanns.sh ${WRKSRC}
 	${PERL} -p -i -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/javanns.sh
@@ -32,12 +37,13 @@ do-configure:
 	${FIND} ${WRKSRC} -type d -print | ${XARGS} ${CHMOD} 0755
 
 do-install:
-	${MKDIR} ${DATADIR} ${DOCSDIR} ${LIBSDIR} ${CLASSDIR}
-	${TAR} -cf - -C${WRKSRC} examples manual |\
-	    ${TAR} -xf - -C${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/libSNNS_jkr.so ${LIBSDIR}
-	${INSTALL_DATA} ${WRKSRC}/JavaNNSini.html ${DATADIR}
+	${MKDIR} ${DATADIR} ${LIBSDIR} ${CLASSDIR}
 	${INSTALL_DATA} ${WRKSRC}/JavaNNS.jar ${CLASSDIR}
 	${INSTALL_SCRIPT} ${WRKSRC}/javanns.sh ${PREFIX}/bin/javanns
+.ifndef NOPORTDOCS
+	${MKDIR} ${DOCSDIR}
+	${TAR} -cf - -C${WRKSRC} examples manual |\
+	    ${TAR} -xf - -C${DOCSDIR}
+.endif
 
 .include <bsd.port.mk>
diff --git a/math/javanns/distinfo b/math/javanns/distinfo
index 67062cdbf4b8..d345f535f1eb 100644
--- a/math/javanns/distinfo
+++ b/math/javanns/distinfo
@@ -1 +1 @@
-MD5 (JavaNNS-LinuxIntel.tar.gz) = 5492626d6e4afa54afdd7209dc7c853a
+MD5 (JavaNNS-LinuxIntel.tar.gz) = 181e9a9159b9539d59e51af64a41cd42
diff --git a/math/javanns/pkg-plist b/math/javanns/pkg-plist
index 3e8ddee85ad4..bcad821ea2bc 100644
--- a/math/javanns/pkg-plist
+++ b/math/javanns/pkg-plist
@@ -1,190 +1,189 @@
 bin/javanns
-share/doc/javanns/examples/README.all
-share/doc/javanns/examples/art1_letters.README
-share/doc/javanns/examples/art1_letters.cfg
-share/doc/javanns/examples/art1_letters.net
-share/doc/javanns/examples/art1_letters.pat
-share/doc/javanns/examples/art1_letters3D.cfg
-share/doc/javanns/examples/art2_tetra.README
-share/doc/javanns/examples/art2_tetra.cfg
-share/doc/javanns/examples/art2_tetra.net
-share/doc/javanns/examples/art2_tetra.pat
-share/doc/javanns/examples/art2_tetra_high.pat
-share/doc/javanns/examples/art2_tetra_low.pat
-share/doc/javanns/examples/art2_tetra_med.pat
-share/doc/javanns/examples/artmap.README
-share/doc/javanns/examples/artmap.cfg
-share/doc/javanns/examples/artmap.net
-share/doc/javanns/examples/artmap_test.pat
-share/doc/javanns/examples/artmap_train.pat
-share/doc/javanns/examples/bdg_TDNN.README
-share/doc/javanns/examples/bdg_TDNN.cfg
-share/doc/javanns/examples/bdg_TDNN.chk
-share/doc/javanns/examples/bdg_TDNN.net
-share/doc/javanns/examples/bdg_TDNN.pat
-share/doc/javanns/examples/bdg_TDNN_untrained.net
-share/doc/javanns/examples/bdg_variable.pat
-share/doc/javanns/examples/default.cfg
-share/doc/javanns/examples/dlvq_ziff.README
-share/doc/javanns/examples/dlvq_ziff.cfg
-share/doc/javanns/examples/dlvq_ziff.chk
-share/doc/javanns/examples/dlvq_ziff.net
-share/doc/javanns/examples/dlvq_ziff_100.pat
-share/doc/javanns/examples/dlvq_ziff_trained.net
-share/doc/javanns/examples/dlvq_ziff_untrained.net
-share/doc/javanns/examples/eight_016.pat
-share/doc/javanns/examples/eight_160.pat
-share/doc/javanns/examples/eight_elman.README
-share/doc/javanns/examples/eight_elman.cfg
-share/doc/javanns/examples/eight_elman.chk
-share/doc/javanns/examples/eight_elman.net
-share/doc/javanns/examples/eight_elman_untrained.net
-share/doc/javanns/examples/eight_jordan.README
-share/doc/javanns/examples/eight_jordan.cfg
-share/doc/javanns/examples/eight_jordan.chk
-share/doc/javanns/examples/eight_jordan.net
-share/doc/javanns/examples/eight_jordan_untrained.net
-share/doc/javanns/examples/encoder.README
-share/doc/javanns/examples/encoder.cfg
-share/doc/javanns/examples/encoder.chk
-share/doc/javanns/examples/encoder.net
-share/doc/javanns/examples/encoder.pat
-share/doc/javanns/examples/encoder_untrained.net
-share/doc/javanns/examples/font.README
-share/doc/javanns/examples/font.cfg
-share/doc/javanns/examples/font.chk
-share/doc/javanns/examples/font.net
-share/doc/javanns/examples/font.pat
-share/doc/javanns/examples/font_untrained.net
-share/doc/javanns/examples/laser.README
-share/doc/javanns/examples/laser.cfg
-share/doc/javanns/examples/laser.chk
-share/doc/javanns/examples/laser.net
-share/doc/javanns/examples/laser_1000.pat
-share/doc/javanns/examples/laser_999.pat
-share/doc/javanns/examples/laser_untrained.net
-share/doc/javanns/examples/letseq.README
-share/doc/javanns/examples/letseq.chk
-share/doc/javanns/examples/letseq_elman.cfg
-share/doc/javanns/examples/letseq_elman.net
-share/doc/javanns/examples/letseq_elman_untrained.net
-share/doc/javanns/examples/letseq_h_elm.cfg
-share/doc/javanns/examples/letseq_h_elm.net
-share/doc/javanns/examples/letseq_test.pat
-share/doc/javanns/examples/letseq_train.pat
-share/doc/javanns/examples/letters.README
-share/doc/javanns/examples/letters.cfg
-share/doc/javanns/examples/letters.chk
-share/doc/javanns/examples/letters.net
-share/doc/javanns/examples/letters.pat
-share/doc/javanns/examples/letters.res
-share/doc/javanns/examples/letters3D.cfg
-share/doc/javanns/examples/letters3D.net
-share/doc/javanns/examples/letters_auto.pat
-share/doc/javanns/examples/letters_untrained.net
-share/doc/javanns/examples/letters_with_classes.pat
-share/doc/javanns/examples/nettalk.README
-share/doc/javanns/examples/nettalk.cfg
-share/doc/javanns/examples/nettalk.net
-share/doc/javanns/examples/nettalk.pat
-share/doc/javanns/examples/nettalk_thr.net
-share/doc/javanns/examples/patmat.README
-share/doc/javanns/examples/patmat.cfg
-share/doc/javanns/examples/patmat.chk
-share/doc/javanns/examples/patmat.net
-share/doc/javanns/examples/patmat.pat
-share/doc/javanns/examples/patmat_untrained.net
-share/doc/javanns/examples/rpropMAP.net
-share/doc/javanns/examples/snnsbat1.cfb
-share/doc/javanns/examples/snnsbat2.cfb
-share/doc/javanns/examples/som_cube.README
-share/doc/javanns/examples/som_cube.cfg
-share/doc/javanns/examples/som_cube.cont
-share/doc/javanns/examples/som_cube.net
-share/doc/javanns/examples/som_cube.pat
-share/doc/javanns/examples/som_cube_norm.pat
-share/doc/javanns/examples/spirals.pat
-share/doc/javanns/examples/spirals_dda.README
-share/doc/javanns/examples/spirals_dda.cfg
-share/doc/javanns/examples/spirals_dda.net
-share/doc/javanns/examples/sprach_test.pat
-share/doc/javanns/examples/sprach_train.pat
-share/doc/javanns/examples/testMAP.pat
-share/doc/javanns/examples/trainMAP.pat
-share/doc/javanns/examples/trainValidMAP.pat
-share/doc/javanns/examples/validMAP.pat
-share/doc/javanns/examples/watch.README
-share/doc/javanns/examples/watch.cfg
-share/doc/javanns/examples/watch.net
-share/doc/javanns/examples/watch.pat
-share/doc/javanns/examples/watch_2out.README
-share/doc/javanns/examples/watch_2out.cfg
-share/doc/javanns/examples/watch_2out.net
-share/doc/javanns/examples/watch_2out.pat
-share/doc/javanns/examples/watch_edge.pgm
-share/doc/javanns/examples/watch_edge_invert.pgm
-share/doc/javanns/examples/watch_orig.pgm
-share/doc/javanns/examples/xor.README
-share/doc/javanns/examples/xor.chk
-share/doc/javanns/examples/xor.net
-share/doc/javanns/examples/xor.pat
-share/doc/javanns/examples/xor_rec.cfg
-share/doc/javanns/examples/xor_rec.net
-share/doc/javanns/examples/xor_rec1.pat
-share/doc/javanns/examples/xor_rec2.pat
-share/doc/javanns/examples/xor_untrained.net
-share/doc/javanns/manual/JavaNNS-manual-1.html
-share/doc/javanns/manual/JavaNNS-manual-2.html
-share/doc/javanns/manual/JavaNNS-manual-3.html
-share/doc/javanns/manual/JavaNNS-manual-4.html
-share/doc/javanns/manual/JavaNNS-manual-5.html
-share/doc/javanns/manual/JavaNNS-manual-6.html
-share/doc/javanns/manual/JavaNNS-manual-7.html
-share/doc/javanns/manual/JavaNNS-manual-8.html
-share/doc/javanns/manual/JavaNNS-manual-9.html
-share/doc/javanns/manual/JavaNNS-manual.css
-share/doc/javanns/manual/JavaNNS-manual.html
-share/doc/javanns/manual/JavaNNS-manual.pdf
-share/doc/javanns/manual/images/Analyzer.gif
-share/doc/javanns/manual/images/CasCorr1.gif
-share/doc/javanns/manual/images/CasCorr2.gif
-share/doc/javanns/manual/images/CasCorr3.gif
-share/doc/javanns/manual/images/CasCorr4.gif
-share/doc/javanns/manual/images/CasCorr5.gif
-share/doc/javanns/manual/images/CasCorr6.gif
-share/doc/javanns/manual/images/ControlPanel1.gif
-share/doc/javanns/manual/images/ControlPanel2.gif
-share/doc/javanns/manual/images/ControlPanel3.gif
-share/doc/javanns/manual/images/ControlPanel4.gif
-share/doc/javanns/manual/images/ControlPanel5.gif
-share/doc/javanns/manual/images/ControlPanel6.gif
-share/doc/javanns/manual/images/CreateLayers.gif
-share/doc/javanns/manual/images/CreateLinks.gif
-share/doc/javanns/manual/images/ErrorGraph.gif
-share/doc/javanns/manual/images/File.gif
-share/doc/javanns/manual/images/JavaNNS-full.gif
-share/doc/javanns/manual/images/LinkWeights.gif
-share/doc/javanns/manual/images/Log.gif
-share/doc/javanns/manual/images/NetSettings1.gif
-share/doc/javanns/manual/images/NetSettings2.gif
-share/doc/javanns/manual/images/Network.gif
-share/doc/javanns/manual/images/Projection.gif
-share/doc/javanns/manual/logo/JavaNNS_head.gif
-share/doc/javanns/manual/logo/SNNS_home.gif
-share/doc/javanns/manual/logo/SNNS_home.jpg
-share/doc/javanns/manual/logo/arrow.gif
-share/doc/javanns/manual/logo/nav_buttons.gif
-share/doc/javanns/manual/logo/nav_buttons_lgrey.gif
-share/doc/javanns/manual/logo/nav_buttons_rgrey.gif
-share/doc/javanns/manual/logo/snns_3d.gif
-share/doc/javanns/manual/logo/spacer.gif
+%%PORTDOCS%%share/doc/javanns/examples/README.all
+%%PORTDOCS%%share/doc/javanns/examples/art1_letters.README
+%%PORTDOCS%%share/doc/javanns/examples/art1_letters.cfg
+%%PORTDOCS%%share/doc/javanns/examples/art1_letters.net
+%%PORTDOCS%%share/doc/javanns/examples/art1_letters.pat
+%%PORTDOCS%%share/doc/javanns/examples/art1_letters3D.cfg
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra.README
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra.cfg
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra.net
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra.pat
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra_high.pat
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra_low.pat
+%%PORTDOCS%%share/doc/javanns/examples/art2_tetra_med.pat
+%%PORTDOCS%%share/doc/javanns/examples/artmap.README
+%%PORTDOCS%%share/doc/javanns/examples/artmap.cfg
+%%PORTDOCS%%share/doc/javanns/examples/artmap.net
+%%PORTDOCS%%share/doc/javanns/examples/artmap_test.pat
+%%PORTDOCS%%share/doc/javanns/examples/artmap_train.pat
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN.README
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN.cfg
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN.chk
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN.net
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN.pat
+%%PORTDOCS%%share/doc/javanns/examples/bdg_TDNN_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/bdg_variable.pat
+%%PORTDOCS%%share/doc/javanns/examples/default.cfg
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff.README
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff.cfg
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff.chk
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff.net
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff_100.pat
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff_trained.net
+%%PORTDOCS%%share/doc/javanns/examples/dlvq_ziff_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/eight_016.pat
+%%PORTDOCS%%share/doc/javanns/examples/eight_160.pat
+%%PORTDOCS%%share/doc/javanns/examples/eight_elman.README
+%%PORTDOCS%%share/doc/javanns/examples/eight_elman.cfg
+%%PORTDOCS%%share/doc/javanns/examples/eight_elman.chk
+%%PORTDOCS%%share/doc/javanns/examples/eight_elman.net
+%%PORTDOCS%%share/doc/javanns/examples/eight_elman_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/eight_jordan.README
+%%PORTDOCS%%share/doc/javanns/examples/eight_jordan.cfg
+%%PORTDOCS%%share/doc/javanns/examples/eight_jordan.chk
+%%PORTDOCS%%share/doc/javanns/examples/eight_jordan.net
+%%PORTDOCS%%share/doc/javanns/examples/eight_jordan_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/encoder.README
+%%PORTDOCS%%share/doc/javanns/examples/encoder.cfg
+%%PORTDOCS%%share/doc/javanns/examples/encoder.chk
+%%PORTDOCS%%share/doc/javanns/examples/encoder.net
+%%PORTDOCS%%share/doc/javanns/examples/encoder.pat
+%%PORTDOCS%%share/doc/javanns/examples/encoder_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/font.README
+%%PORTDOCS%%share/doc/javanns/examples/font.cfg
+%%PORTDOCS%%share/doc/javanns/examples/font.chk
+%%PORTDOCS%%share/doc/javanns/examples/font.net
+%%PORTDOCS%%share/doc/javanns/examples/font.pat
+%%PORTDOCS%%share/doc/javanns/examples/font_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/laser.README
+%%PORTDOCS%%share/doc/javanns/examples/laser.cfg
+%%PORTDOCS%%share/doc/javanns/examples/laser.chk
+%%PORTDOCS%%share/doc/javanns/examples/laser.net
+%%PORTDOCS%%share/doc/javanns/examples/laser_1000.pat
+%%PORTDOCS%%share/doc/javanns/examples/laser_999.pat
+%%PORTDOCS%%share/doc/javanns/examples/laser_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/letseq.README
+%%PORTDOCS%%share/doc/javanns/examples/letseq.chk
+%%PORTDOCS%%share/doc/javanns/examples/letseq_elman.cfg
+%%PORTDOCS%%share/doc/javanns/examples/letseq_elman.net
+%%PORTDOCS%%share/doc/javanns/examples/letseq_elman_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/letseq_h_elm.cfg
+%%PORTDOCS%%share/doc/javanns/examples/letseq_h_elm.net
+%%PORTDOCS%%share/doc/javanns/examples/letseq_test.pat
+%%PORTDOCS%%share/doc/javanns/examples/letseq_train.pat
+%%PORTDOCS%%share/doc/javanns/examples/letters.README
+%%PORTDOCS%%share/doc/javanns/examples/letters.cfg
+%%PORTDOCS%%share/doc/javanns/examples/letters.chk
+%%PORTDOCS%%share/doc/javanns/examples/letters.net
+%%PORTDOCS%%share/doc/javanns/examples/letters.pat
+%%PORTDOCS%%share/doc/javanns/examples/letters.res
+%%PORTDOCS%%share/doc/javanns/examples/letters3D.cfg
+%%PORTDOCS%%share/doc/javanns/examples/letters3D.net
+%%PORTDOCS%%share/doc/javanns/examples/letters_auto.pat
+%%PORTDOCS%%share/doc/javanns/examples/letters_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/letters_with_classes.pat
+%%PORTDOCS%%share/doc/javanns/examples/nettalk.README
+%%PORTDOCS%%share/doc/javanns/examples/nettalk.cfg
+%%PORTDOCS%%share/doc/javanns/examples/nettalk.net
+%%PORTDOCS%%share/doc/javanns/examples/nettalk.pat
+%%PORTDOCS%%share/doc/javanns/examples/nettalk_thr.net
+%%PORTDOCS%%share/doc/javanns/examples/patmat.README
+%%PORTDOCS%%share/doc/javanns/examples/patmat.cfg
+%%PORTDOCS%%share/doc/javanns/examples/patmat.chk
+%%PORTDOCS%%share/doc/javanns/examples/patmat.net
+%%PORTDOCS%%share/doc/javanns/examples/patmat.pat
+%%PORTDOCS%%share/doc/javanns/examples/patmat_untrained.net
+%%PORTDOCS%%share/doc/javanns/examples/rpropMAP.net
+%%PORTDOCS%%share/doc/javanns/examples/snnsbat1.cfb
+%%PORTDOCS%%share/doc/javanns/examples/snnsbat2.cfb
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+%%PORTDOCS%%share/doc/javanns/examples/som_cube.cfg
+%%PORTDOCS%%share/doc/javanns/examples/som_cube.cont
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+%%PORTDOCS%%share/doc/javanns/examples/som_cube.pat
+%%PORTDOCS%%share/doc/javanns/examples/som_cube_norm.pat
+%%PORTDOCS%%share/doc/javanns/examples/spirals.pat
+%%PORTDOCS%%share/doc/javanns/examples/spirals_dda.README
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+%%PORTDOCS%%share/doc/javanns/examples/spirals_dda.net
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+%%PORTDOCS%%share/doc/javanns/examples/xor_rec.net
+%%PORTDOCS%%share/doc/javanns/examples/xor_rec1.pat
+%%PORTDOCS%%share/doc/javanns/examples/xor_rec2.pat
+%%PORTDOCS%%share/doc/javanns/examples/xor_untrained.net
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+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel1.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel2.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel3.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel4.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel5.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ControlPanel6.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/CreateLayers.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/CreateLinks.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/ErrorGraph.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/File.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/JavaNNS-full.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/LinkWeights.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/Log.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/NetSettings1.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/NetSettings2.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/Network.gif
+%%PORTDOCS%%share/doc/javanns/manual/images/Projection.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/JavaNNS_head.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/SNNS_home.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/arrow.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/nav_buttons.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/nav_buttons_lgrey.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/nav_buttons_rgrey.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/snns_3d.gif
+%%PORTDOCS%%share/doc/javanns/manual/logo/spacer.gif
 share/java/classes/JavaNNS.jar
-share/javanns/JavaNNSini.html
-share/javanns/lib/libSNNS_jkr.so
 @dirrm share/javanns/lib
 @dirrm share/javanns
-@dirrm share/doc/javanns/manual/logo
-@dirrm share/doc/javanns/manual/images
-@dirrm share/doc/javanns/manual
-@dirrm share/doc/javanns/examples
-@dirrm share/doc/javanns
+%%PORTDOCS%%@dirrm share/doc/javanns/manual/logo
+%%PORTDOCS%%@dirrm share/doc/javanns/manual/images
+%%PORTDOCS%%@dirrm share/doc/javanns/manual
+%%PORTDOCS%%@dirrm share/doc/javanns/examples
+%%PORTDOCS%%@dirrm share/doc/javanns