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| author | jasone <jasone@FreeBSD.org> | 2009-06-10 09:25:02 +0800 |
|---|---|---|
| committer | jasone <jasone@FreeBSD.org> | 2009-06-10 09:25:02 +0800 |
| commit | 07e7c915e60fcb1ac0450ced2e516e7764ee0c79 (patch) | |
| tree | 9ee47bcdb9548c94e483210523d7a3598ebd31e2 /biology/crux | |
| parent | b95ecf2fadde32ed5cf622b640fe2dc6deca45f7 (diff) | |
| download | freebsd-ports-gnome-07e7c915e60fcb1ac0450ced2e516e7764ee0c79.tar.gz freebsd-ports-gnome-07e7c915e60fcb1ac0450ced2e516e7764ee0c79.tar.zst freebsd-ports-gnome-07e7c915e60fcb1ac0450ced2e516e7764ee0c79.zip | |
Change CONFIGURE_ENV --> USE_CSTD. [1]
Add missing pkg-plist entry for Parsing.so. [2]
Change RUN_DEPENDS --> LIB_DEPENDS for optional math/atlas dependency.
Submitted by: [1] erwin
Reported by: [2] QAT
Diffstat (limited to 'biology/crux')
| -rw-r--r-- | biology/crux/Makefile | 7 | ||||
| -rw-r--r-- | biology/crux/pkg-plist | 1 |
2 files changed, 6 insertions, 2 deletions
diff --git a/biology/crux/Makefile b/biology/crux/Makefile index fc9b8c38ae2d..437c646d1308 100644 --- a/biology/crux/Makefile +++ b/biology/crux/Makefile @@ -16,7 +16,7 @@ COMMENT= Software toolkit for phylogenetic inference USE_BZIP2= yes GNU_CONFIGURE= yes CONFIGURE_ARGS=--with-python=${PYTHON_CMD} --disable-mpi -CONFIGURE_ENV+=EXTRA_CFLAGS="-std=gnu99" +USE_CSTD= gnu99 USE_GMAKE= yes USE_PYTHON= 2.5+ @@ -25,8 +25,11 @@ OPTIONS= SYS_LINALG "Enable system ATLAS/LAPACK" Off .include <bsd.port.pre.mk> .if defined(WITH_SYS_LINALG) +CPPFLAGS+= -I${LOCALBASE}/include +LDFLAGS+= -L${LOCALBASE}/lib CONFIGURE_ARGS+= --enable-sys-linalg -RUN_DEPENDS+= libatlas:${PORTSDIR}/math/atlas +CONFIGURE_ENV+= CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}" +LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas .else CONFIGURE_ARGS+= --disable-sys-linalg USE_FORTRAN= yes diff --git a/biology/crux/pkg-plist b/biology/crux/pkg-plist index a7e4291e4b56..2b8bd492ac0b 100644 --- a/biology/crux/pkg-plist +++ b/biology/crux/pkg-plist @@ -51,6 +51,7 @@ bin/MrRogers %%PYTHON_SITELIBDIR%%/Crux/include/Crux/libm.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Crux/libc.pxd %%PYTHON_SITELIBDIR%%/Crux/include/Parsing.pxd +%%PYTHON_SITELIBDIR%%/Parsing.so share/Crux/lib/libCx.so share/Crux/parsers/Fasta.log share/Crux/parsers/Fasta.pickle |