o New port distribfold version 0.1: distribfold.org distributed protein

  folding project
o One can start multiple instances of this port. Just install it
  using WITH_NCPU

3 files changed, 93 insertions, 0 deletions

diff --git a/biology/distribfold/files/distribfold.sh b/biology/distribfold/files/distribfold.sh
new file mode 100644
index 000000000000..fc6c75095c6a
--- /dev/null
+++ b/biology/distribfold/files/distribfold.sh
@@ -0,0 +1,61 @@
+#!/bin/sh
+# taken from misc/dnetc by dbaker@distributed.net
+
+prefix="%%DESTINATION_DIR%%"
+ncpu=%%NCPU%%
+
+case "$1" in
+start)
+	while [ ${ncpu} -gt 0 ];
+	do
+		# update cpu count
+		ncpu=$((${ncpu} - 1))
+
+		# dir for current cpu
+		dir="${prefix}/cpu${ncpu}"
+
+		if [ ! -d $dir ]; then
+		 logger -i "distribfold client directory doesn't exist. ($dir)."
+		 exit
+		fi
+
+		if [ ! -f $dir/foldtrajlite ]; then
+		 logger -i "distribfold client doesn't exist. ($dir/dfoldtrajlite)."
+		 exit
+		fi
+
+		if [ ! -f $dir/handle.txt ]; then
+		 logger -i "distribfold client is not configured. 'su -m %%DNETFOLD_USER%% -c $dir/foldit' to configure it."
+		 echo "distribfold client is not configured. 'su -m %%DNETFOLD_USER%% -c $dir/foldit' to configure it."
+		 exit
+		fi
+
+		# start client for current cpu
+		su -m %%DNETFOLD_USER%% -c "cd $dir && ./foldit" 2>/dev/null >/dev/null &
+	done
+
+	echo -n " distribfold"
+	;;
+stop)
+	while [ ${ncpu} -gt 0 ];
+	do
+		# update cpu count
+		ncpu=$((${ncpu} - 1))
+
+		# dir for current cpu
+		dir="${prefix}/cpu${ncpu}"
+
+		rm $dir/foldtrajlite.lock
+	done
+
+	# give clients enough time to shutdown
+	# 5 seconds minimum + 5 seconds per number of clients
+	sleep $((5 + $((5 * ${ncpu})))) && echo -n " distribfold"
+	;;
+*)
+	echo "Usage: `basename $0` {start|stop}" >&2
+	exit 64
+	;;
+esac
+
+exit 0
diff --git a/biology/distribfold/files/number_of_dirs.sh b/biology/distribfold/files/number_of_dirs.sh
new file mode 100644
index 000000000000..bdb3b87cc56b
--- /dev/null
+++ b/biology/distribfold/files/number_of_dirs.sh
@@ -0,0 +1,16 @@
+#!/bin/sh
+
+ncpu=${1}
+current_list=""
+
+while [ ${ncpu} -gt 0 ];
+do
+	# update cpu count
+	ncpu=$((${ncpu} - 1))
+
+	current_list="${current_list} ${ncpu}"
+done
+
+echo ${current_list}
+
+exit 0
diff --git a/biology/distribfold/files/patch-foldit b/biology/distribfold/files/patch-foldit
new file mode 100644
index 000000000000..3543505e05e8
--- /dev/null
+++ b/biology/distribfold/files/patch-foldit
@@ -0,0 +1,16 @@
+--- foldit.orig	Sun Sep 29 16:49:55 2002
++++ foldit	Sun Sep 29 16:50:42 2002
+@@ -1,4 +1,7 @@
+ #!/bin/sh
++
++cd %%DESTINATION_DIR%%
++
+ if [ -f donename.dat ]
+ then
+ 	rm -f tmpfoldit.bat
+@@ -23,4 +26,4 @@
+ 		fi
+ 	fi	
+ fi	
+-./foldtrajlite -f protein -n native 
++exec ./foldtrajlite -f protein -n native