diff options
| author | miwi <miwi@FreeBSD.org> | 2007-10-24 07:07:19 +0800 |
|---|---|---|
| committer | miwi <miwi@FreeBSD.org> | 2007-10-24 07:07:19 +0800 |
| commit | 28327aa49c0379017f101694cf2f490eda5b3796 (patch) | |
| tree | 8e636f4b4d8b60d46ef9fa01034b9c1477b300a8 /biology/lamarc/files | |
| parent | 310d67ceb04a062324563a8788a554618ded4241 (diff) | |
| download | freebsd-ports-gnome-28327aa49c0379017f101694cf2f490eda5b3796.tar.gz freebsd-ports-gnome-28327aa49c0379017f101694cf2f490eda5b3796.tar.zst freebsd-ports-gnome-28327aa49c0379017f101694cf2f490eda5b3796.zip | |
- Update to 2.1.2b
PR: 117336
Submitted by: KATO Tsuguru <tkato432@yahoo.com>
Diffstat (limited to 'biology/lamarc/files')
| -rw-r--r-- | biology/lamarc/files/patch-Makefile.in | 32 | ||||
| -rw-r--r-- | biology/lamarc/files/patch-configure | 16 |
2 files changed, 15 insertions, 33 deletions
diff --git a/biology/lamarc/files/patch-Makefile.in b/biology/lamarc/files/patch-Makefile.in index dd417d23d7db..742dd9f7a8ae 100644 --- a/biology/lamarc/files/patch-Makefile.in +++ b/biology/lamarc/files/patch-Makefile.in @@ -1,24 +1,6 @@ ---- Makefile.in.orig Mon May 7 06:58:52 2007 -+++ Makefile.in Fri Aug 31 01:11:04 2007 -@@ -51,7 +51,7 @@ - @OSX_APP_FALSE@am__append_8 = -ggdb - @NODATA_TRUE@am__append_9 = -DSTATIONARIES -DNOPROGRESSBAR - @DEBUG_TRUE@am__append_10 = $(debugflags) --@DEBUG_FALSE@am__append_11 = -O3 -funroll-loops -DNDEBUG -+@DEBUG_FALSE@am__append_11 = -DNDEBUG - @DMALLOC_TRUE@am__append_12 = -ldmallocxx - @DMALLOC_TRUE@am__append_13 = -DDMALLOC_FUNC_CHECK - @EFENCE_TRUE@am__append_14 = -lefence -@@ -1155,7 +1155,7 @@ - CPPFLAGS = @CPPFLAGS@ - CXX = @CXX@ - CXXDEPMODE = @CXXDEPMODE@ --CXXFLAGS = -+CXXFLAGS = @CXXFLAGS@ - CYGPATH_W = @CYGPATH_W@ - DEBUG_FALSE = @DEBUG_FALSE@ - DEBUG_TRUE = @DEBUG_TRUE@ -@@ -1994,7 +1994,7 @@ +--- Makefile.in.orig Fri Oct 5 06:17:37 2007 ++++ Makefile.in Sat Oct 13 00:44:22 2007 +@@ -2011,7 +2011,7 @@ EXTRA_batch_lam_conv_SOURCES = $(tinyxml_suite) lam_conv_app_SOURCES = lamarc_app_SOURCES = @@ -27,7 +9,7 @@ html_DATA = \ doc/html/bayes.html \ doc/html/bayes_howto.html \ -@@ -2037,7 +2037,7 @@ +@@ -2054,7 +2054,7 @@ doc/html/viral_data.html \ doc/html/xmlinput.html @@ -36,7 +18,7 @@ htmlimg_DATA = \ doc/html/images/browser-gtk.gif \ doc/html/images/correlated1.gif \ -@@ -2054,7 +2054,7 @@ +@@ -2072,7 +2072,7 @@ doc/html/images/uncorrelated.gif \ doc/html/images/variably_correlated.gif @@ -45,7 +27,7 @@ htmlbconv_DATA = \ doc/html/batch_converter/README.txt \ doc/html/batch_converter/chrom1_lamarc.xml \ -@@ -2068,7 +2068,7 @@ +@@ -2086,7 +2086,7 @@ doc/html/batch_converter/exported-lamarc-input.xml \ doc/html/batch_converter/sample-conv-cmd.xml @@ -54,7 +36,7 @@ htmlbconvimg_DATA = \ doc/html/batch_converter/images/lam_conv_chrom1_export_file_selection.png \ doc/html/batch_converter/images/lam_conv_chrom1_export_warn_1.png \ -@@ -2082,7 +2082,7 @@ +@@ -2100,7 +2100,7 @@ doc/html/batch_converter/images/lam_conv_chrom3_region_table.png \ doc/html/batch_converter/images/lam_conv_chrom3_segment_snp.png diff --git a/biology/lamarc/files/patch-configure b/biology/lamarc/files/patch-configure index 54c5317ec075..658b3e301d3f 100644 --- a/biology/lamarc/files/patch-configure +++ b/biology/lamarc/files/patch-configure @@ -1,11 +1,11 @@ ---- configure.orig Wed May 2 05:59:05 2007 -+++ configure Thu Aug 30 18:26:42 2007 -@@ -1494,7 +1494,7 @@ - OSTYPE=MACOSX - GUI_PKG=mac +--- configure.orig Thu Oct 4 01:33:34 2007 ++++ configure Sat Oct 13 00:47:54 2007 +@@ -2029,7 +2029,7 @@ + LAMARC_CODE_OSTYPE=LAMARC_COMPILE_MACOSX + fi ;; - linux*) + freebsd*|linux*) - OSTYPE=LINUX - GUI_PKG=gtk2 - ;; + if test "X${lamCONV}" = "Xyes" ; then + if test "X${lamGUI}" = "Xyes" ; then + if test "X${GUI_TOOLKIT}" = "X" ; then |