Update to version 1.75

4 files changed, 27 insertions, 14 deletions

diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile
index 1e9512a8b60c..3e93e8e40b7d 100644
--- a/biology/p5-AcePerl/Makefile
+++ b/biology/p5-AcePerl/Makefile
@@ -6,10 +6,10 @@
 #
 
 PORTNAME=	AcePerl
-PORTVERSION=	1.70
+PORTVERSION=	1.75
 CATEGORIES=	biology databases perl5
 MASTER_SITES=	${MASTER_SITE_PERL_CPAN}
-MASTER_SITE_SUBDIR=Ace
+MASTER_SITE_SUBDIR=	Ace
 PKGNAMEPREFIX=	p5-
 
 MAINTAINER=	bio@freebsd.net
@@ -18,10 +18,13 @@ PERL_CONFIGURE=	yes
 
 MAN3=		Ace.3 Ace::Browser::AceSubs.3 Ace::Graphics::Fk.3 \
 		Ace::Graphics::Glyph.3 Ace::Graphics::Glyph::anchored_arrow.3 \
-		Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::group.3 \
+		Ace::Graphics::Glyph::arrow.3 Ace::Graphics::Glyph::dot.3 \
+		Ace::Graphics::Glyph::ex.3 Ace::Graphics::Glyph::group.3 \
 		Ace::Graphics::Glyph::line.3 Ace::Graphics::Glyph::primers.3 \
-		Ace::Graphics::Glyph::segments.3 \
+		Ace::Graphics::Glyph::segments.3 Ace::Graphics::Glyph::span.3 \
+		Ace::Graphics::Glyph::toomany.3 \
 		Ace::Graphics::Glyph::transcript.3 \
+		Ace::Graphics::Glyph::triangle.3 \
 		Ace::Graphics::GlyphFactory.3 Ace::Graphics::Panel.3 \
 		Ace::Graphics::Track.3 Ace::Iterator.3 Ace::Local.3 \
 		Ace::Model.3 Ace::Object.3 Ace::Sequence.3 \
diff --git a/biology/p5-AcePerl/distinfo b/biology/p5-AcePerl/distinfo
index 1878c8c7ce91..3bbe0f036f72 100644
--- a/biology/p5-AcePerl/distinfo
+++ b/biology/p5-AcePerl/distinfo
@@ -1 +1 @@
-MD5 (AcePerl-1.70.tar.gz) = f2ab51ce6c4aa7abc0136abd55f486b6
+MD5 (AcePerl-1.75.tar.gz) = a59ce125e8373710bd18191464558cb0
diff --git a/biology/p5-AcePerl/files/patch-aa b/biology/p5-AcePerl/files/patch-aa
index add3f24ba66b..3dd954af99e5 100644
--- a/biology/p5-AcePerl/files/patch-aa
+++ b/biology/p5-AcePerl/files/patch-aa
@@ -1,22 +1,23 @@
---- ace/wh/mystdlib.h.orig	Fri Jul  2 23:04:55 1999
-+++ ace/wh/mystdlib.h	Thu Jul 27 17:20:19 2000
-@@ -161,7 +161,7 @@
+--- ace/wh/mystdlib.h.orig	Mon Jul 16 23:04:45 2001
++++ ace/wh/mystdlib.h	Mon Aug 13 12:42:25 2001
+@@ -161,7 +161,8 @@
  #endif
  
  #if defined(POSIX) || defined(LINUX) || defined(SOLARIS) || defined(SGI) || \
--	defined(HP) || defined(WIN32)
-+	defined(HP) || defined(WIN32) || defined(FREEBSD)
+-	defined(HP) || defined(WIN32) || defined(INTEL_SOLARIS)
++	defined(HP) || defined(WIN32) || defined(INTEL_SOLARIS) || \
++	defined(FREEBSD)
  
  #ifdef WIN32
  #include <mbctype.h>
---- ace/wh/mydirent.h.orig	Mon Jan 11 01:51:40 1999
-+++ ace/wh/mydirent.h	Thu Jul 27 17:20:41 2000
+--- ace/wh/mydirent.h.orig	Mon Jul 16 23:04:45 2001
++++ ace/wh/mydirent.h	Mon Aug 13 12:41:59 2001
 @@ -55,7 +55,7 @@
  extern char *getwd(char *pathname) ;
  #endif /* HP || SOLARIS || WIN32 */
  
--#if defined (POSIX) || defined(SUN) || defined(SUNSVR4) || defined(SOLARIS) || defined(DEC) || defined(ALPHA) || defined(SGI) || defined(LINUX) || defined(HP)
-+#if defined (POSIX) || defined(SUN) || defined(SUNSVR4) || defined(SOLARIS) || defined(DEC) || defined(ALPHA) || defined(SGI) || defined(LINUX) || defined(HP) || defined(FREEBSD)
+-#if defined (POSIX) || defined(SUN) || defined(SUNSVR4) || defined(SOLARIS) || defined(DEC) || defined(ALPHA) || defined(SGI) || defined(LINUX) || defined(HP) || defined (INTEL_SOLARIS)
++#if defined (POSIX) || defined(SUN) || defined(SUNSVR4) || defined(SOLARIS) || defined(DEC) || defined(ALPHA) || defined(SGI) || defined(LINUX) || defined(HP) || defined (INTEL_SOLARIS) || defined (FREEBSD)
  #include <dirent.h>
    typedef struct dirent MYDIRENT ;
  #endif
diff --git a/biology/p5-AcePerl/pkg-plist b/biology/p5-AcePerl/pkg-plist
index 723b0fcbdec5..d07a2459f6b2 100644
--- a/biology/p5-AcePerl/pkg-plist
+++ b/biology/p5-AcePerl/pkg-plist
@@ -1,5 +1,6 @@
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/AceSubs.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/GeneSubs.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SearchSubs.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/SiteDefs.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Browser/TreeSubs.pm
@@ -8,11 +9,17 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Fk.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/anchored_arrow.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/arrow.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/crossbox.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/dot.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/ex.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/group.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/line.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/primers.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/segments.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/span.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/toomany.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/transcript.pm
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Glyph/triangle.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/GlyphFactory.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Panel.pm
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Ace/Graphics/Track.pm
@@ -78,7 +85,9 @@ lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/autosplit.ix
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/class_count.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/classes.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/count.al
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/date.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/date_style.al
+lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/datetime.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/fetch_many.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/find.al
 lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Ace/freeprotect.al