- Update to 1.20

- Sort RUN_DEPENDS and MAN3

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes

2 files changed, 71 insertions, 73 deletions

diff --git a/biology/p5-Bio-MAGETAB/Makefile b/biology/p5-Bio-MAGETAB/Makefile
index 01f0916161d3..e76049a67357 100644
--- a/biology/p5-Bio-MAGETAB/Makefile
+++ b/biology/p5-Bio-MAGETAB/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	Bio-MAGETAB
-PORTVERSION=	1.13
+PORTVERSION=	1.20
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
@@ -14,83 +14,81 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	perl@FreeBSD.org
 COMMENT=	A data model and utility API for the MAGE-TAB format
 
-BUILD_DEPENDS=	p5-DateTime-Format-DateManip>=0.04:${PORTSDIR}/devel/p5-DateTime-Format-DateManip \
+RUN_DEPENDS=	p5-Date-Manip>=5.44:${PORTSDIR}/devel/p5-Date-Manip \
+		p5-DateTime>=0.43.02:${PORTSDIR}/devel/p5-DateTime \
+		p5-DateTime-Format-DateManip>=0.04:${PORTSDIR}/devel/p5-DateTime-Format-DateManip \
+		p5-Email-Valid>=0.179:${PORTSDIR}/mail/p5-Email-Valid \
+		p5-Moose>=0.43:${PORTSDIR}/devel/p5-Moose \
 		p5-MooseX-FollowPBP>=0.04:${PORTSDIR}/devel/p5-MooseX-FollowPBP \
 		p5-MooseX-Types>=0.10:${PORTSDIR}/devel/p5-MooseX-Types \
-		p5-Parse-RecDescent>=1.96:${PORTSDIR}/devel/p5-Parse-RecDescent \
 		p5-Params-Coerce>=0.14:${PORTSDIR}/devel/p5-Params-Coerce \
-		p5-URI>=1.35:${PORTSDIR}/net/p5-URI \
-		p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception \
-		p5-Date-Manip>=5.44:${PORTSDIR}/devel/p5-Date-Manip \
-		p5-DateTime>=0.43:${PORTSDIR}/devel/p5-DateTime \
+		p5-Parse-RecDescent>=1.960:${PORTSDIR}/devel/p5-Parse-RecDescent \
 		p5-Text-CSV_XS>=0.32:${PORTSDIR}/textproc/p5-Text-CSV_XS \
-		p5-Email-Valid>=0.179:${PORTSDIR}/mail/p5-Email-Valid \
-		p5-Moose>=0.43:${PORTSDIR}/devel/p5-Moose
-RUN_DEPENDS=	${BUILD_DEPENDS}
+		p5-URI>=1.35:${PORTSDIR}/net/p5-URI
 TEST_DEPENDS=	p5-Test-Exception>=0.26:${PORTSDIR}/devel/p5-Test-Exception
 
-PERL_CONFIGURE=	YES
+PERL_CONFIGURE=	yes
+WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION:C/0$//}
 
-MAN3=	Bio::MAGETAB::Material.3 \
-	Bio::MAGETAB::Types.3 \
-	Bio::MAGETAB::ControlledTerm.3 \
-	Bio::MAGETAB::Util::Reader::DataMatrix.3 \
-	Bio::MAGETAB::DesignElement.3 \
-	Bio::MAGETAB::Contact.3 \
-	Bio::MAGETAB::Investigation.3 \
-	Bio::MAGETAB::Comment.3 \
-	Bio::MAGETAB::Sample.3 \
-	Bio::MAGETAB::Publication.3 \
-	Bio::MAGETAB::DataFile.3 \
-	Bio::MAGETAB::Event.3 \
-	Bio::MAGETAB::Edge.3 \
-	Bio::MAGETAB::ArrayDesign.3 \
-	Bio::MAGETAB.3 \
-	Bio::MAGETAB::Util::Writer::ADF.3 \
-	Bio::MAGETAB::MatrixColumn.3 \
-	Bio::MAGETAB::Normalization.3 \
-	Bio::MAGETAB::Util::Reader::TagValueFile.3 \
-	Bio::MAGETAB::ParameterValue.3 \
-	Bio::MAGETAB::Util::Reader::Tabfile.3 \
-	Bio::MAGETAB::Util::Writer.3 \
-	Bio::MAGETAB::Util::Writer::Tabfile.3 \
-	Bio::MAGETAB::DataAcquisition.3 \
-	Bio::MAGETAB::Util::Reader::SDRF.3 \
-	Bio::MAGETAB::Assay.3 \
-	Bio::MAGETAB::SDRFRow.3 \
-	Bio::MAGETAB::Util::Writer::IDF.3 \
-	Bio::MAGETAB::SDRF.3 \
-	Bio::MAGETAB::MatrixRow.3 \
-	Bio::MAGETAB::Data.3 \
-	Bio::MAGETAB::Util::Reader.3 \
-	Bio::MAGETAB::Extract.3 \
-	Bio::MAGETAB::Util::Reader::IDF.3 \
-	Bio::MAGETAB::TermSource.3 \
-	Bio::MAGETAB::Measurement.3 \
-	Bio::MAGETAB::Util::Builder.3 \
-	Bio::MAGETAB::CompositeElement.3 \
-	Bio::MAGETAB::Node.3 \
-	Bio::MAGETAB::Util::DBLoader.3 \
-	Bio::MAGETAB::BaseClass.3 \
-	Bio::MAGETAB::Util::Writer::SDRF.3 \
-	Bio::MAGETAB::Protocol.3 \
-	Bio::MAGETAB::Reporter.3 \
-	Bio::MAGETAB::Util::Reader::ADF.3 \
-	Bio::MAGETAB::Factor.3 \
-	Bio::MAGETAB::DatabaseEntry.3 \
-	Bio::MAGETAB::Feature.3 \
-	Bio::MAGETAB::LabeledExtract.3 \
-	Bio::MAGETAB::ProtocolApplication.3 \
-	Bio::MAGETAB::Util::RewriteAE.3 \
-	Bio::MAGETAB::Source.3 \
-	Bio::MAGETAB::Util::Persistence.3 \
-	Bio::MAGETAB::Util::Writer::GraphViz.3 \
-	Bio::MAGETAB::DataMatrix.3 \
-	Bio::MAGETAB::FactorValue.3 \
-	Bio::MAGETAB::ProtocolParameter.3
+MAN3=		Bio::MAGETAB.3 \
+		Bio::MAGETAB::ArrayDesign.3 \
+		Bio::MAGETAB::Assay.3 \
+		Bio::MAGETAB::BaseClass.3 \
+		Bio::MAGETAB::Comment.3 \
+		Bio::MAGETAB::CompositeElement.3 \
+		Bio::MAGETAB::Contact.3 \
+		Bio::MAGETAB::ControlledTerm.3 \
+		Bio::MAGETAB::Data.3 \
+		Bio::MAGETAB::DataAcquisition.3 \
+		Bio::MAGETAB::DataFile.3 \
+		Bio::MAGETAB::DataMatrix.3 \
+		Bio::MAGETAB::DatabaseEntry.3 \
+		Bio::MAGETAB::DesignElement.3 \
+		Bio::MAGETAB::Edge.3 \
+		Bio::MAGETAB::Event.3 \
+		Bio::MAGETAB::Extract.3 \
+		Bio::MAGETAB::Factor.3 \
+		Bio::MAGETAB::FactorValue.3 \
+		Bio::MAGETAB::Feature.3 \
+		Bio::MAGETAB::Investigation.3 \
+		Bio::MAGETAB::LabeledExtract.3 \
+		Bio::MAGETAB::Material.3 \
+		Bio::MAGETAB::MatrixColumn.3 \
+		Bio::MAGETAB::MatrixRow.3 \
+		Bio::MAGETAB::Measurement.3 \
+		Bio::MAGETAB::Node.3 \
+		Bio::MAGETAB::Normalization.3 \
+		Bio::MAGETAB::ParameterValue.3 \
+		Bio::MAGETAB::Protocol.3 \
+		Bio::MAGETAB::ProtocolApplication.3 \
+		Bio::MAGETAB::ProtocolParameter.3 \
+		Bio::MAGETAB::Publication.3 \
+		Bio::MAGETAB::Reporter.3 \
+		Bio::MAGETAB::SDRF.3 \
+		Bio::MAGETAB::SDRFRow.3 \
+		Bio::MAGETAB::Sample.3 \
+		Bio::MAGETAB::Source.3 \
+		Bio::MAGETAB::TermSource.3 \
+		Bio::MAGETAB::Types.3 \
+		Bio::MAGETAB::Util::Builder.3 \
+		Bio::MAGETAB::Util::DBLoader.3 \
+		Bio::MAGETAB::Util::Persistence.3 \
+		Bio::MAGETAB::Util::Reader.3 \
+		Bio::MAGETAB::Util::Reader::ADF.3 \
+		Bio::MAGETAB::Util::Reader::DataMatrix.3 \
+		Bio::MAGETAB::Util::Reader::IDF.3 \
+		Bio::MAGETAB::Util::Reader::SDRF.3 \
+		Bio::MAGETAB::Util::Reader::Tabfile.3 \
+		Bio::MAGETAB::Util::Reader::TagValueFile.3 \
+		Bio::MAGETAB::Util::RewriteAE.3 \
+		Bio::MAGETAB::Util::Writer.3 \
+		Bio::MAGETAB::Util::Writer::ADF.3 \
+		Bio::MAGETAB::Util::Writer::GraphViz.3 \
+		Bio::MAGETAB::Util::Writer::IDF.3 \
+		Bio::MAGETAB::Util::Writer::SDRF.3 \
+		Bio::MAGETAB::Util::Writer::Tabfile.3
 
-post-extract:
-	@${REINPLACE_CMD} -e 's?auto_install?#auto_install?g' \
-		${WRKSRC}/Makefile.PL
+post-patch:
+	@${REINPLACE_CMD} -e '/^auto_install;/d' ${WRKSRC}/Makefile.PL
 
 .include <bsd.port.mk>
diff --git a/biology/p5-Bio-MAGETAB/distinfo b/biology/p5-Bio-MAGETAB/distinfo
index 63f4ac5436be..6c22be6999e3 100644
--- a/biology/p5-Bio-MAGETAB/distinfo
+++ b/biology/p5-Bio-MAGETAB/distinfo
@@ -1,2 +1,2 @@
-SHA256 (Bio-MAGETAB-1.13.tar.gz) = e03547cb58d6d5ef4d76da74856d6dfec215603e0000f044297b657653ef1a74
-SIZE (Bio-MAGETAB-1.13.tar.gz) = 246449
+SHA256 (Bio-MAGETAB-1.20.tar.gz) = eef68da1de40b50dab807cf87182fffefc74f5c84ea7eb513229fcd8f5103313
+SIZE (Bio-MAGETAB-1.20.tar.gz) = 252789