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authorwen <wen@FreeBSD.org>2010-10-22 17:29:44 +0800
committerwen <wen@FreeBSD.org>2010-10-22 17:29:44 +0800
commit611c6f11ef5ced86d5c6f828ecbadf3cdf1cfe39 (patch)
tree073406a1547867d6397e2502eb1328d76882da56 /biology/p5-Bio-Phylo
parentf7b10d098d01f41b912a2263d0048e91c844c75b (diff)
downloadfreebsd-ports-gnome-611c6f11ef5ced86d5c6f828ecbadf3cdf1cfe39.tar.gz
freebsd-ports-gnome-611c6f11ef5ced86d5c6f828ecbadf3cdf1cfe39.tar.zst
freebsd-ports-gnome-611c6f11ef5ced86d5c6f828ecbadf3cdf1cfe39.zip
- Update to 0.22
Diffstat (limited to 'biology/p5-Bio-Phylo')
-rw-r--r--biology/p5-Bio-Phylo/Makefile10
-rw-r--r--biology/p5-Bio-Phylo/distinfo6
-rw-r--r--biology/p5-Bio-Phylo/pkg-plist24
3 files changed, 20 insertions, 20 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 41a1679a8a96..410bcdede501 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -6,8 +6,7 @@
#
PORTNAME= Bio-Phylo
-PORTVERSION= 0.21
-PORTREVISION= 1
+PORTVERSION= 0.22
CATEGORIES= biology perl5
MASTER_SITES= CPAN
PKGNAMEPREFIX= p5-
@@ -23,6 +22,7 @@ BUILD_DEPENDS= p5-Exception-Class>1.22:${PORTSDIR}/devel/p5-Exception-Class \
RUN_DEPENDS= ${BUILD_DEPENDS}
MAN3= Bio::Phylo.3 \
+ Bio::Phylo::EvolutionaryModels.3 \
Bio::Phylo::Factory.3 \
Bio::Phylo::Forest::DrawNode.3 \
Bio::Phylo::Forest::DrawTree.3 \
@@ -70,6 +70,12 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Taxa::Taxon.3 \
Bio::Phylo::Taxa::TaxonLinker.3 \
Bio::Phylo::Treedrawer.3 \
+ Bio::Phylo::Treedrawer::Canvas.3 \
+ Bio::Phylo::Treedrawer::Gif.3 \
+ Bio::Phylo::Treedrawer::Jpeg.3 \
+ Bio::Phylo::Treedrawer::Pdf.3 \
+ Bio::Phylo::Treedrawer::Png.3 \
+ Bio::Phylo::Treedrawer::Swf.3 \
Bio::Phylo::Treedrawer::Svg.3 \
Bio::Phylo::Unparsers::Mrp.3 \
Bio::Phylo::Unparsers::Newick.3 \
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index 9b4ad69e6281..cb1659b4c7dc 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,3 +1,3 @@
-MD5 (Bio-Phylo-0.21.tar.gz) = 7376e008835c25711a1beb7d36d9c937
-SHA256 (Bio-Phylo-0.21.tar.gz) = 806302334e804fdc0040949f2ec889e7a8d9ad3193cfad9fab5bdff7df53f54b
-SIZE (Bio-Phylo-0.21.tar.gz) = 219585
+MD5 (Bio-Phylo-0.22.tar.gz) = c65e5b689c2531fa86b1d8b602ce07b6
+SHA256 (Bio-Phylo-0.22.tar.gz) = 13048b128d98ea68254cf90cb5c7c752f4d1572c5849c56af0f2a160aa363e16
+SIZE (Bio-Phylo-0.22.tar.gz) = 241678
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index 6c2f48982ef3..83740d0cb718 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -1,4 +1,5 @@
%%SITE_PERL%%/Bio/Phylo.pm
+%%SITE_PERL%%/Bio/Phylo/EvolutionaryModels.pm
%%SITE_PERL%%/Bio/Phylo/Forest.pm
%%SITE_PERL%%/Bio/Phylo/Forest/DrawNode.pm
%%SITE_PERL%%/Bio/Phylo/Forest/DrawTree.pm
@@ -25,17 +26,11 @@
%%SITE_PERL%%/Bio/Phylo/Mediators/TaxaMediator.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/Libxml.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/Twig.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/._Libxml.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/._Twig.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/._Twig.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/Twig.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/._Libxml.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/Libxml.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/Meta/._XMLLiteral.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Meta/XMLLiteral.pm
-%%SITE_PERL%%/Bio/Phylo/NeXML/._DOM.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/._Meta.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Meta.pm
@@ -53,6 +48,13 @@
%%SITE_PERL%%/Bio/Phylo/Taxa/TaxaLinker.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/TaxonLinker.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Canvas.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Pdf.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Swf.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Png.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Gif.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Jpeg.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Abstract.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
@@ -64,29 +66,21 @@
%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
%%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm
-%%SITE_PERL%%/Bio/Phylo/Util/._StackTrace.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo/.packlist
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo
-@dirrm %%SITE_PERL%%/Bio/Phylo/Util/DOM/Document
-@dirrm %%SITE_PERL%%/Bio/Phylo/Util/DOM/Element
-@dirrm %%SITE_PERL%%/Bio/Phylo/Util/DOM
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
@dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
-@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource
-@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Service
-@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS
@dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
-@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM
+@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices
@dirrm %%SITE_PERL%%/Bio/Phylo/Mediators
-@dirrm %%SITE_PERL%%/Bio/Phylo/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/Forest
@dirrm %%SITE_PERL%%/Bio/Phylo
@dirrmtry %%SITE_PERL%%/Bio