Add p5-bioperl-devel 0.9.0,

a collection of Perl modules for
bioinformatics (developer's release).

2 files changed, 25 insertions, 0 deletions

diff --git a/biology/p5-bioperl-devel/files/ext.msg b/biology/p5-bioperl-devel/files/ext.msg
new file mode 100644
index 000000000000..1ba9af2f5f84
--- /dev/null
+++ b/biology/p5-bioperl-devel/files/ext.msg
@@ -0,0 +1,16 @@
+---------------------------------------------------------------------------
+This port includes support for a number of optional extensions to Bioperl.
+To build the port with these extensions, set the corresponding variables:
+
+To build with client-side CORBA support:	set WITH_CORBA_CLIENT
+To build with server-side CORBA support:	set WITH_CORBA_SERVER
+To build with (experimental) GUI support:	set WITH_GUI
+
+Additionally, the variable WITH_CORBA implies both WITH_CORBA_CLIENT and
+WITH_CORBA_SERVER.
+
+For example, to build and install the Bioperl port with all the currently
+available optional extensions:
+
+  make WITH_CORBA=yes WITH_GUI=yes install
+---------------------------------------------------------------------------
diff --git a/biology/p5-bioperl-devel/files/patch-aa b/biology/p5-bioperl-devel/files/patch-aa
new file mode 100644
index 000000000000..4aecbfe2a166
--- /dev/null
+++ b/biology/p5-bioperl-devel/files/patch-aa
@@ -0,0 +1,9 @@
+--- ../bioperl-ext-06/Bio/Ext/Align/libs/makefile.orig	Thu Sep 16 15:33:08 1999
++++ ../bioperl-ext-06/Bio/Ext/Align/libs/makefile	Fri Jul 28 11:57:27 2000
+@@ -47,5 +47,5 @@
+ # For NetBSD or Sun (solaris) installs, add -fPIC to the CFLAGS lines
+ #
+ 
+-CFLAGS = -c -O
++CFLAGS+= -c -O -fPIC
+ CC     = cc