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| author | miwi <miwi@FreeBSD.org> | 2017-05-06 14:05:24 +0800 |
|---|---|---|
| committer | miwi <miwi@FreeBSD.org> | 2017-05-06 14:05:24 +0800 |
| commit | f7b8fb2b34e0453e74ef784947333b7aca56b43b (patch) | |
| tree | 69193bcda9a19ee6090f464aa2223270e49b2543 /biology/wise | |
| parent | 8e6824b7d54f091a577437055b04707b8a38db96 (diff) | |
| download | freebsd-ports-gnome-f7b8fb2b34e0453e74ef784947333b7aca56b43b.tar.gz freebsd-ports-gnome-f7b8fb2b34e0453e74ef784947333b7aca56b43b.tar.zst freebsd-ports-gnome-f7b8fb2b34e0453e74ef784947333b7aca56b43b.zip | |
pysam is a lightweight wrapper of the htslib C-API and provides facilities to
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.
WWW: https://pypi.python.org/pypi/pysam
PR: 218745
Submitted by: Yuri Victorovich <yuri@rawbw.com>
Diffstat (limited to 'biology/wise')
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