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author | rene <rene@FreeBSD.org> | 2017-08-23 19:33:26 +0800 |
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committer | rene <rene@FreeBSD.org> | 2017-08-23 19:33:26 +0800 |
commit | 61f86670802bfcb11f1959210e1438a8d555124d (patch) | |
tree | 057be916dadedc782d9c9c5e63bb95bb20bbc4b1 /biology | |
parent | 541831c342a047ab8e41c7e13b8db986345d9ef7 (diff) | |
download | freebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.tar.gz freebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.tar.zst freebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.zip |
Remove expired ports:
2017-08-23 games/plee-the-bear: Broken for more than 6 months
2017-08-23 x11-themes/kde-icons-umicons: Broken for more than 6 months
2017-08-23 lang/bigloo: Broken for more than 6 months
2017-08-23 audio/linux-neroaaccodec: Broken for more than 6 months
2017-08-23 x11-themes/kde-icons-dark-glass: Broken for more than 6 months
2017-08-23 misc/fortune-mod-ferengi_rules_of_acquisition: Broken for more than 6 months
2017-08-23 misc/fortune-mod-culmea-culmilor: Broken for more than 6 months
2017-08-23 misc/xyzcmd: Broken for more than 6 months
2017-08-23 russian/fortuneru: Broken for more than 6 months
2017-08-23 security/bdc: Broken for more than 6 months
2017-08-23 x11-themes/kde-icons-icosx: Broken for more than 6 months
2017-08-23 devel/insight: Broken for more than 6 months
2017-08-23 devel/gdb66: Broken for more than 6 months
2017-08-23 biology/biojava: Broken for more than 6 months
2017-08-23 games/xroach: Broken for more than 6 months
Diffstat (limited to 'biology')
-rw-r--r-- | biology/Makefile | 1 | ||||
-rw-r--r-- | biology/biojava/Makefile | 69 | ||||
-rw-r--r-- | biology/biojava/distinfo | 2 | ||||
-rw-r--r-- | biology/biojava/pkg-descr | 11 | ||||
-rw-r--r-- | biology/biojava/pkg-plist | 4 |
5 files changed, 0 insertions, 87 deletions
diff --git a/biology/Makefile b/biology/Makefile index 6732768052c0..e9f524296acc 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -10,7 +10,6 @@ SUBDIR += bcftools SUBDIR += bedtools SUBDIR += biococoa - SUBDIR += biojava SUBDIR += blat SUBDIR += bowtie SUBDIR += bowtie2 diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile deleted file mode 100644 index 0c7c347b3276..000000000000 --- a/biology/biojava/Makefile +++ /dev/null @@ -1,69 +0,0 @@ -# Created by: FreeBSD Bio porters (bio@freebsd.net) -# $FreeBSD$ - -PORTNAME= biojava -DISTVERSION= 1.7 -PORTEPOCH= 1 -CATEGORIES= biology java -MASTER_SITES= http://www.biojava.org/download/bj17/all/ -DISTNAME= ${PORTNAME}-${DISTVERSION}-all -EXTRACT_SUFX= .jar - -MAINTAINER= ports@FreeBSD.org -COMMENT= Open-source Java tools for processing biological data - -BROKEN= Does not build -DEPRECATED= Broken for more than 6 months -EXPIRATION_DATE= 2017-08-23 - -USE_JAVA= yes -JAVA_VERSION= 1.6+ -USE_ANT= yes -MAKE_ENV= CLASSPATH="${JAVALIBDIR}" -ALL_TARGET= package-biojava - -JARFILES= biojava.jar bytecode.jar -PORTDOCS= biojava -PORTEXAMPLES= demos -WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} - -OPTIONS_DEFINE= DOCS EXAMPLES - -.include <bsd.port.options.mk> - -.if !defined(WITHOUT_TESTS) -regression-test: - @(cd ${BUILD_WRKSRC}; \ - ${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests) -.endif - -do-install: - @${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..." - @${MKDIR} ${STAGEDIR}${JAVAJARDIR} - @${INSTALL_DATA} ${JARFILES:S|^|${WRKSRC}/ant-build/|} ${STAGEDIR}${JAVAJARDIR} - @${ECHO_MSG} " [ DONE ]" - - @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..." - @${MKDIR} ${STAGEDIR}${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/LICENSE ${STAGEDIR}${DOCSDIR} - @${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR} - @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} biojava ${STAGEDIR}${DOCSDIR}) - @${ECHO_MSG} " [ DONE ]" - - @${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..." - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} - @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} demos ${STAGEDIR}${EXAMPLESDIR}) - @${ECHO_MSG} " [ DONE ]" - -.if !defined(BATCH) - @${ECHO_MSG} "" - @${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}" - @${ECHO_MSG} "You should edit your CLASSPATH to include the jar files" - @${ECHO_MSG} "in this directory." - @${ECHO_MSG} "" - @${ECHO_MSG} "Docs and demos are installed in:" - @${ECHO_MSG} "${DOCSDIR}" - @${ECHO_MSG} "" -.endif - -.include <bsd.port.mk> diff --git a/biology/biojava/distinfo b/biology/biojava/distinfo deleted file mode 100644 index f01f3a41d5b1..000000000000 --- a/biology/biojava/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (biojava-1.7-all.jar) = 5c5e7fc66bc79a07494fb7d935164ec2aab50dc2effb7644f89bfa4fc907bb3f -SIZE (biojava-1.7-all.jar) = 28062592 diff --git a/biology/biojava/pkg-descr b/biology/biojava/pkg-descr deleted file mode 100644 index 93982d73f041..000000000000 --- a/biology/biojava/pkg-descr +++ /dev/null @@ -1,11 +0,0 @@ -The BioJava Project is an open-source project dedicated to providing Java -tools for processing biological data. This will include objects for -manipulating sequences, file parsers, CORBA interoperability, access to -ACeDB, dynamic programming, and simple statistical routines. - -The BioJava library is useful for automating those daily and mundane -bioinformatics tasks. As the library matures, the BioJava libraries will -provide a foundation upon which both free software and commercial packages -can be developed. - -WWW: http://www.biojava.org/ diff --git a/biology/biojava/pkg-plist b/biology/biojava/pkg-plist deleted file mode 100644 index 6e7694ed71dc..000000000000 --- a/biology/biojava/pkg-plist +++ /dev/null @@ -1,4 +0,0 @@ -%%JAVAJARDIR%%/biojava.jar -%%JAVAJARDIR%%/bytecode.jar -%%PORTDOCS%%%%DOCSDIR%%/LICENSE -%%PORTDOCS%%%%DOCSDIR%%/README |