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authorrene <rene@FreeBSD.org>2017-08-23 19:33:26 +0800
committerrene <rene@FreeBSD.org>2017-08-23 19:33:26 +0800
commit61f86670802bfcb11f1959210e1438a8d555124d (patch)
tree057be916dadedc782d9c9c5e63bb95bb20bbc4b1 /biology
parent541831c342a047ab8e41c7e13b8db986345d9ef7 (diff)
downloadfreebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.tar.gz
freebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.tar.zst
freebsd-ports-gnome-61f86670802bfcb11f1959210e1438a8d555124d.zip
Remove expired ports:
2017-08-23 games/plee-the-bear: Broken for more than 6 months 2017-08-23 x11-themes/kde-icons-umicons: Broken for more than 6 months 2017-08-23 lang/bigloo: Broken for more than 6 months 2017-08-23 audio/linux-neroaaccodec: Broken for more than 6 months 2017-08-23 x11-themes/kde-icons-dark-glass: Broken for more than 6 months 2017-08-23 misc/fortune-mod-ferengi_rules_of_acquisition: Broken for more than 6 months 2017-08-23 misc/fortune-mod-culmea-culmilor: Broken for more than 6 months 2017-08-23 misc/xyzcmd: Broken for more than 6 months 2017-08-23 russian/fortuneru: Broken for more than 6 months 2017-08-23 security/bdc: Broken for more than 6 months 2017-08-23 x11-themes/kde-icons-icosx: Broken for more than 6 months 2017-08-23 devel/insight: Broken for more than 6 months 2017-08-23 devel/gdb66: Broken for more than 6 months 2017-08-23 biology/biojava: Broken for more than 6 months 2017-08-23 games/xroach: Broken for more than 6 months
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/biojava/Makefile69
-rw-r--r--biology/biojava/distinfo2
-rw-r--r--biology/biojava/pkg-descr11
-rw-r--r--biology/biojava/pkg-plist4
5 files changed, 0 insertions, 87 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 6732768052c0..e9f524296acc 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -10,7 +10,6 @@
SUBDIR += bcftools
SUBDIR += bedtools
SUBDIR += biococoa
- SUBDIR += biojava
SUBDIR += blat
SUBDIR += bowtie
SUBDIR += bowtie2
diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile
deleted file mode 100644
index 0c7c347b3276..000000000000
--- a/biology/biojava/Makefile
+++ /dev/null
@@ -1,69 +0,0 @@
-# Created by: FreeBSD Bio porters (bio@freebsd.net)
-# $FreeBSD$
-
-PORTNAME= biojava
-DISTVERSION= 1.7
-PORTEPOCH= 1
-CATEGORIES= biology java
-MASTER_SITES= http://www.biojava.org/download/bj17/all/
-DISTNAME= ${PORTNAME}-${DISTVERSION}-all
-EXTRACT_SUFX= .jar
-
-MAINTAINER= ports@FreeBSD.org
-COMMENT= Open-source Java tools for processing biological data
-
-BROKEN= Does not build
-DEPRECATED= Broken for more than 6 months
-EXPIRATION_DATE= 2017-08-23
-
-USE_JAVA= yes
-JAVA_VERSION= 1.6+
-USE_ANT= yes
-MAKE_ENV= CLASSPATH="${JAVALIBDIR}"
-ALL_TARGET= package-biojava
-
-JARFILES= biojava.jar bytecode.jar
-PORTDOCS= biojava
-PORTEXAMPLES= demos
-WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
-
-OPTIONS_DEFINE= DOCS EXAMPLES
-
-.include <bsd.port.options.mk>
-
-.if !defined(WITHOUT_TESTS)
-regression-test:
- @(cd ${BUILD_WRKSRC}; \
- ${SETENV} ${MAKE_ENV} ${ANT} ${MAKE_ARGS} runtests)
-.endif
-
-do-install:
- @${ECHO_MSG} -n ">> Installing JAR files in ${JAVAJARDIR}..."
- @${MKDIR} ${STAGEDIR}${JAVAJARDIR}
- @${INSTALL_DATA} ${JARFILES:S|^|${WRKSRC}/ant-build/|} ${STAGEDIR}${JAVAJARDIR}
- @${ECHO_MSG} " [ DONE ]"
-
- @${ECHO_MSG} -n ">> Installing documentation in ${DOCSDIR}..."
- @${MKDIR} ${STAGEDIR}${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/LICENSE ${STAGEDIR}${DOCSDIR}
- @${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR}
- @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} biojava ${STAGEDIR}${DOCSDIR})
- @${ECHO_MSG} " [ DONE ]"
-
- @${ECHO_MSG} -n ">> Installing examples in ${EXAMPLESDIR}..."
- @${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
- @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} demos ${STAGEDIR}${EXAMPLESDIR})
- @${ECHO_MSG} " [ DONE ]"
-
-.if !defined(BATCH)
- @${ECHO_MSG} ""
- @${ECHO_MSG} "Libraries installed at: ${JAVAJARDIR}"
- @${ECHO_MSG} "You should edit your CLASSPATH to include the jar files"
- @${ECHO_MSG} "in this directory."
- @${ECHO_MSG} ""
- @${ECHO_MSG} "Docs and demos are installed in:"
- @${ECHO_MSG} "${DOCSDIR}"
- @${ECHO_MSG} ""
-.endif
-
-.include <bsd.port.mk>
diff --git a/biology/biojava/distinfo b/biology/biojava/distinfo
deleted file mode 100644
index f01f3a41d5b1..000000000000
--- a/biology/biojava/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (biojava-1.7-all.jar) = 5c5e7fc66bc79a07494fb7d935164ec2aab50dc2effb7644f89bfa4fc907bb3f
-SIZE (biojava-1.7-all.jar) = 28062592
diff --git a/biology/biojava/pkg-descr b/biology/biojava/pkg-descr
deleted file mode 100644
index 93982d73f041..000000000000
--- a/biology/biojava/pkg-descr
+++ /dev/null
@@ -1,11 +0,0 @@
-The BioJava Project is an open-source project dedicated to providing Java
-tools for processing biological data. This will include objects for
-manipulating sequences, file parsers, CORBA interoperability, access to
-ACeDB, dynamic programming, and simple statistical routines.
-
-The BioJava library is useful for automating those daily and mundane
-bioinformatics tasks. As the library matures, the BioJava libraries will
-provide a foundation upon which both free software and commercial packages
-can be developed.
-
-WWW: http://www.biojava.org/
diff --git a/biology/biojava/pkg-plist b/biology/biojava/pkg-plist
deleted file mode 100644
index 6e7694ed71dc..000000000000
--- a/biology/biojava/pkg-plist
+++ /dev/null
@@ -1,4 +0,0 @@
-%%JAVAJARDIR%%/biojava.jar
-%%JAVAJARDIR%%/bytecode.jar
-%%PORTDOCS%%%%DOCSDIR%%/LICENSE
-%%PORTDOCS%%%%DOCSDIR%%/README