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| author | wen <wen@FreeBSD.org> | 2011-04-22 16:51:24 +0800 |
|---|---|---|
| committer | wen <wen@FreeBSD.org> | 2011-04-22 16:51:24 +0800 |
| commit | b060b72063a7b0b461acfe2e32a12726d15bc487 (patch) | |
| tree | aa2a6b52dca39ad799ebd54bd745638b4c99c2b8 /biology | |
| parent | 0f764b44ec860ead4e7fe3175f33f6863311eb04 (diff) | |
| download | freebsd-ports-gnome-b060b72063a7b0b461acfe2e32a12726d15bc487.tar.gz freebsd-ports-gnome-b060b72063a7b0b461acfe2e32a12726d15bc487.tar.zst freebsd-ports-gnome-b060b72063a7b0b461acfe2e32a12726d15bc487.zip | |
Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files.
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.
WWW: http://search.cpan.org/dist/Bio-GFF3/
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/p5-Bio-GFF3/Makefile | 30 | ||||
| -rw-r--r-- | biology/p5-Bio-GFF3/distinfo | 2 | ||||
| -rw-r--r-- | biology/p5-Bio-GFF3/pkg-descr | 5 | ||||
| -rw-r--r-- | biology/p5-Bio-GFF3/pkg-plist | 11 |
5 files changed, 49 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index b5db583ea90f..90c4e325f7d0 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -61,6 +61,7 @@ SUBDIR += p5-Bio-ASN1-EntrezGene SUBDIR += p5-Bio-Das SUBDIR += p5-Bio-Das-Lite + SUBDIR += p5-Bio-GFF3 SUBDIR += p5-Bio-Glite SUBDIR += p5-Bio-Graphics SUBDIR += p5-Bio-MAGETAB diff --git a/biology/p5-Bio-GFF3/Makefile b/biology/p5-Bio-GFF3/Makefile new file mode 100644 index 000000000000..a81b97d917e2 --- /dev/null +++ b/biology/p5-Bio-GFF3/Makefile @@ -0,0 +1,30 @@ +# New ports collection makefile for: p5-Bio-GFF3 +# Date created: 22 Apr, 2011 +# Whom: Wen Heping <wenheping@gmail.com> +# +# $FreeBSD$ +# + +PORTNAME= Bio-GFF3 +PORTVERSION= 0.3 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= wen@FreeBSD.org +COMMENT= Fast, low-level functions for parsing and formatting GFF3 + +RUN_DEPENDS= p5-File-ReadBackwards>=0:${PORTSDIR}/devel/p5-File-ReadBackwards \ + p5-IO-String>=0:${PORTSDIR}/devel/p5-IO-String \ + p5-IO-stringy>=0:${PORTSDIR}/devel/p5-IO-stringy \ + p5-URI>=0:${PORTSDIR}/net/p5-URI + +PERL_CONFIGURE= YES + +MAN1= gff3_insert_sync_directives.1 \ + gff3_from_fasta.1 +MAN3= Bio::GFF3::Transform::SyncDirectives.3 \ + Bio::GFF3::LowLevel.3 \ + Bio::GFF3::Transform::FromFasta.3 + +.include <bsd.port.mk> diff --git a/biology/p5-Bio-GFF3/distinfo b/biology/p5-Bio-GFF3/distinfo new file mode 100644 index 000000000000..db5b65798188 --- /dev/null +++ b/biology/p5-Bio-GFF3/distinfo @@ -0,0 +1,2 @@ +SHA256 (Bio-GFF3-0.3.tar.gz) = 13feaf0d23b540573714b0cad93f6b4fcff624ae2930982bee49e02a2a243c6c +SIZE (Bio-GFF3-0.3.tar.gz) = 40185 diff --git a/biology/p5-Bio-GFF3/pkg-descr b/biology/p5-Bio-GFF3/pkg-descr new file mode 100644 index 000000000000..880f85884464 --- /dev/null +++ b/biology/p5-Bio-GFF3/pkg-descr @@ -0,0 +1,5 @@ +Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. +All they do is convert back and forth between low-level Perl data +structures and GFF3 text. + +WWW: http://search.cpan.org/dist/Bio-GFF3/ diff --git a/biology/p5-Bio-GFF3/pkg-plist b/biology/p5-Bio-GFF3/pkg-plist new file mode 100644 index 000000000000..4e9ce6e11e33 --- /dev/null +++ b/biology/p5-Bio-GFF3/pkg-plist @@ -0,0 +1,11 @@ +bin/gff3_from_fasta +bin/gff3_insert_sync_directives +%%SITE_PERL%%/Bio/GFF3/Transform/SyncDirectives.pm +%%SITE_PERL%%/Bio/GFF3/Transform/FromFasta.pm +%%SITE_PERL%%/Bio/GFF3/LowLevel.pm +%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3/.packlist +@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/GFF3 +@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio +@dirrmtry %%SITE_PERL%%/Bio/GFF3/Transform +@dirrmtry %%SITE_PERL%%/Bio/GFF3 +@dirrmtry %%SITE_PERL%%/Bio |