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authorwen <wen@FreeBSD.org>2017-09-13 09:45:35 +0800
committerwen <wen@FreeBSD.org>2017-09-13 09:45:35 +0800
commitdb001c41f327033ce8ba3912a44ad319a24bae03 (patch)
tree66b99b2ff8dd4067e2d3446e0f3d9a178a8ba14c /biology
parente2e65d776cfde763a48ccee83b60954b099bdc40 (diff)
downloadfreebsd-ports-gnome-db001c41f327033ce8ba3912a44ad319a24bae03.tar.gz
freebsd-ports-gnome-db001c41f327033ce8ba3912a44ad319a24bae03.tar.zst
freebsd-ports-gnome-db001c41f327033ce8ba3912a44ad319a24bae03.zip
- Update to 1.007002
Changes: http://search.cpan.org/src/CJFIELDS/BioPerl-1.007002/Changes
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-BioPerl/Makefile3
-rw-r--r--biology/p5-BioPerl/distinfo6
-rw-r--r--biology/p5-BioPerl/pkg-plist10
3 files changed, 4 insertions, 15 deletions
diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile
index 5ec3da283c7c..82fb358da082 100644
--- a/biology/p5-BioPerl/Makefile
+++ b/biology/p5-BioPerl/Makefile
@@ -2,8 +2,7 @@
# $FreeBSD$
PORTNAME= BioPerl
-PORTVERSION= 1.007001
-PORTREVISION= 2
+PORTVERSION= 1.007002
CATEGORIES= biology perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:CJFIELDS
diff --git a/biology/p5-BioPerl/distinfo b/biology/p5-BioPerl/distinfo
index de8de98486f3..28d3fb904493 100644
--- a/biology/p5-BioPerl/distinfo
+++ b/biology/p5-BioPerl/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1479828383
-SHA256 (BioPerl-1.007001.tar.gz) = 9da1dbcd10452f53194c98c6cc2f604a59124507dcc1e6a8440565f44dd07b40
-SIZE (BioPerl-1.007001.tar.gz) = 12486953
+TIMESTAMP = 1505232617
+SHA256 (BioPerl-1.007002.tar.gz) = 17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1
+SIZE (BioPerl-1.007002.tar.gz) = 12362741
diff --git a/biology/p5-BioPerl/pkg-plist b/biology/p5-BioPerl/pkg-plist
index f24234684afb..8027beef64d8 100644
--- a/biology/p5-BioPerl/pkg-plist
+++ b/biology/p5-BioPerl/pkg-plist
@@ -36,7 +36,6 @@ bin/bp_netinstall.pl
bin/bp_nexus2nh.pl
bin/bp_nrdb.pl
bin/bp_oligo_count.pl
-bin/bp_pairwise_kaks.pl
bin/bp_parse_hmmsearch.pl
bin/bp_process_gadfly.pl
bin/bp_process_sgd.pl
@@ -769,10 +768,6 @@ bin/bp_unflatten_seq.pl
%%SITE_PERL%%/Bio/Tools/Phylo/Gumby.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Molphy.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Molphy/Result.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/Codeml.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/ModelResult.pm
-%%SITE_PERL%%/Bio/Tools/Phylo/PAML/Result.pm
%%SITE_PERL%%/Bio/Tools/Phylo/Phylip/ProtDist.pm
%%SITE_PERL%%/Bio/Tools/Prediction/Exon.pm
%%SITE_PERL%%/Bio/Tools/Prediction/Gene.pm
@@ -893,7 +888,6 @@ bin/bp_unflatten_seq.pl
%%PERL5_MAN1%%/bp_nexus2nh.pl.1.gz
%%PERL5_MAN1%%/bp_nrdb.pl.1.gz
%%PERL5_MAN1%%/bp_oligo_count.pl.1.gz
-%%PERL5_MAN1%%/bp_pairwise_kaks.pl.1.gz
%%PERL5_MAN1%%/bp_parse_hmmsearch.pl.1.gz
%%PERL5_MAN1%%/bp_process_gadfly.pl.1.gz
%%PERL5_MAN1%%/bp_process_sgd.pl.1.gz
@@ -1623,10 +1617,6 @@ bin/bp_unflatten_seq.pl
%%PERL5_MAN3%%/Bio::Tools::Phylo::Gumby.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Molphy::Result.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::Codeml.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::ModelResult.3.gz
-%%PERL5_MAN3%%/Bio::Tools::Phylo::PAML::Result.3.gz
%%PERL5_MAN3%%/Bio::Tools::Phylo::Phylip::ProtDist.3.gz
%%PERL5_MAN3%%/Bio::Tools::Prediction::Exon.3.gz
%%PERL5_MAN3%%/Bio::Tools::Prediction::Gene.3.gz