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author | dinoex <dinoex@FreeBSD.org> | 2012-06-01 13:26:28 +0800 |
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committer | dinoex <dinoex@FreeBSD.org> | 2012-06-01 13:26:28 +0800 |
commit | 530706893f31269bbfa303e069f2e76cbbe2fce7 (patch) | |
tree | a8077a0d6e20d70b39e6a7fe3e57a6dafe7c7f33 /biology | |
parent | 9d262811a145d3e715edefd1d5d64ceac41de547 (diff) | |
download | freebsd-ports-gnome-530706893f31269bbfa303e069f2e76cbbe2fce7.tar.gz freebsd-ports-gnome-530706893f31269bbfa303e069f2e76cbbe2fce7.tar.zst freebsd-ports-gnome-530706893f31269bbfa303e069f2e76cbbe2fce7.zip |
- update png to 1.5.10
Diffstat (limited to 'biology')
-rw-r--r-- | biology/embassy/Makefile | 2 | ||||
-rw-r--r-- | biology/emboss/Makefile | 6 | ||||
-rw-r--r-- | biology/genpak/Makefile | 2 | ||||
-rw-r--r-- | biology/gperiodic/Makefile | 2 | ||||
-rw-r--r-- | biology/p5-Bio-Das/Makefile | 2 | ||||
-rw-r--r-- | biology/p5-Bio-Graphics/Makefile | 1 | ||||
-rw-r--r-- | biology/p5-Bio-Phylo/Makefile | 1 | ||||
-rw-r--r-- | biology/p5-bioperl-run/Makefile | 2 | ||||
-rw-r--r-- | biology/p5-bioperl/Makefile | 2 | ||||
-rw-r--r-- | biology/povchem/Makefile | 2 | ||||
-rw-r--r-- | biology/protomol/Makefile | 4 | ||||
-rw-r--r-- | biology/pymol/Makefile | 3 | ||||
-rw-r--r-- | biology/seaview/Makefile | 2 | ||||
-rw-r--r-- | biology/treeviewx/Makefile | 2 | ||||
-rw-r--r-- | biology/xdrawchem/Makefile | 2 |
15 files changed, 19 insertions, 16 deletions
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile index 41d1b14baf4b..cbb37e290d66 100644 --- a/biology/embassy/Makefile +++ b/biology/embassy/Makefile @@ -8,7 +8,7 @@ PORTNAME= embassy PORTVERSION= 6.2.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/ DIST_SUBDIR= emboss diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile index dbc931cf52bb..b9a5e0b31a43 100644 --- a/biology/emboss/Makefile +++ b/biology/emboss/Makefile @@ -8,7 +8,7 @@ PORTNAME= emboss PORTVERSION= 6.2.0 RELEASE= ${PORTNAME:U}-${PORTVERSION} -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MASTER_SITES= ftp://emboss.open-bio.org/pub/EMBOSS/ DISTNAME= ${RELEASE} @@ -20,7 +20,7 @@ COMMENT= A collection of open source tools for genetic sequence analysis BUILD_DEPENDS= clustalw:${PORTSDIR}/biology/clustalw \ primer3:${PORTSDIR}/biology/primer3 LIB_DEPENDS= gd.4:${PORTSDIR}/graphics/gd \ - png.6:${PORTSDIR}/graphics/png + png15:${PORTSDIR}/graphics/png CONFLICTS= qmail-ldap-[0-9]* digest-[0-9]* @@ -44,7 +44,7 @@ CONFIGURE_ARGS+= --with-docroot=${DOCSDIR} USE_XORG= x11 USE_MOTIF= yes LIB_DEPENDS+= gd.4:${PORTSDIR}/graphics/gd \ - png.6:${PORTSDIR}/graphics/png + png15:${PORTSDIR}/graphics/png .else CONFIGURE_ARGS+= --without-x .endif diff --git a/biology/genpak/Makefile b/biology/genpak/Makefile index 52af42a6097b..4735855af352 100644 --- a/biology/genpak/Makefile +++ b/biology/genpak/Makefile @@ -8,7 +8,7 @@ PORTNAME= genpak PORTVERSION= 0.26 -PORTREVISION= 7 +PORTREVISION= 8 CATEGORIES= biology MASTER_SITES= http://www.bioinformatics.org/genpak/download/ DISTNAME= gp-${PORTVERSION} diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile index e19ccde0786d..a9b4caaa18ef 100644 --- a/biology/gperiodic/Makefile +++ b/biology/gperiodic/Makefile @@ -7,7 +7,7 @@ PORTNAME= gperiodic PORTVERSION= 2.0.10 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= biology MASTER_SITES= http://www.frantz.fi/software/ diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile index f3615d350a05..60b25424aa24 100644 --- a/biology/p5-Bio-Das/Makefile +++ b/biology/p5-Bio-Das/Makefile @@ -7,7 +7,7 @@ PORTNAME= Bio-Das PORTVERSION= 1.17 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile index 3f677f958879..b707af4fe801 100644 --- a/biology/p5-Bio-Graphics/Makefile +++ b/biology/p5-Bio-Graphics/Makefile @@ -7,6 +7,7 @@ PORTNAME= Bio-Graphics PORTVERSION= 2.28 +PORTREVISION= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile index aa388d4bd42d..e73ec371b6af 100644 --- a/biology/p5-Bio-Phylo/Makefile +++ b/biology/p5-Bio-Phylo/Makefile @@ -7,6 +7,7 @@ PORTNAME= Bio-Phylo PORTVERSION= 0.48 +PORTREVISION= 1 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- diff --git a/biology/p5-bioperl-run/Makefile b/biology/p5-bioperl-run/Makefile index 4ee63b210a08..5414a95550f8 100644 --- a/biology/p5-bioperl-run/Makefile +++ b/biology/p5-bioperl-run/Makefile @@ -7,7 +7,7 @@ PORTNAME= bioperl-run PORTVERSION= 1.6.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology perl5 MASTER_SITES= http://bioperl.org/DIST/ \ CPAN diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile index 4830902d7cf9..b438bfd33096 100644 --- a/biology/p5-bioperl/Makefile +++ b/biology/p5-bioperl/Makefile @@ -7,7 +7,7 @@ PORTNAME= bioperl PORTVERSION= 1.6.1 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= biology perl5 MASTER_SITES= http://bioperl.org/DIST/ \ CPAN diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile index 1a14cfef0ce9..18aa6c25c99d 100644 --- a/biology/povchem/Makefile +++ b/biology/povchem/Makefile @@ -7,7 +7,7 @@ PORTNAME= povchem PORTVERSION= 1.0 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= biology graphics MASTER_SITES= http://www.chemicalgraphics.com/paul/PC_Dist/v1.00/ DISTFILES= povchem.c \ diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile index 3fc6b7680a23..656012dfcaef 100644 --- a/biology/protomol/Makefile +++ b/biology/protomol/Makefile @@ -6,7 +6,7 @@ PORTNAME= protomol PORTVERSION= 2.0.3 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= biology MASTER_SITES= SF/${PORTNAME}/ProtoMol/${PORTVERSION} DISTNAME= ${PORTNAME}-${PORTVERSION}-tar.gz @@ -15,7 +15,7 @@ EXTRACT_SUFX= # nada MAINTAINER= sangwoos@gmail.com COMMENT= OO, component based, framework for molecular dynamics (MD) simulations -LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \ +LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ jpeg.11:${PORTSDIR}/graphics/jpeg \ tiff.4:${PORTSDIR}/graphics/tiff diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile index 33484a174424..bc84b3a13fb3 100644 --- a/biology/pymol/Makefile +++ b/biology/pymol/Makefile @@ -6,6 +6,7 @@ PORTNAME= pymol PORTVERSION= ${VERSION}.${SVNREVISION} +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|} @@ -15,7 +16,7 @@ COMMENT= Free and Open-Source molecular modeling system BUILD_DEPENDS= ${PYNUMERIC} RUN_DEPENDS= ${PYNUMERIC} \ ${PYTHON_SITELIBDIR}/Pmw:${PORTSDIR}/x11-toolkits/py-Pmw -LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \ +LIB_DEPENDS= png15:${PORTSDIR}/graphics/png \ freetype.9:${PORTSDIR}/print/freetype2 VERSION= 1.5.0.1 diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile index a56fb753de05..c7b4308075c7 100644 --- a/biology/seaview/Makefile +++ b/biology/seaview/Makefile @@ -8,7 +8,7 @@ PORTNAME= seaview PORTVERSION= 2006.02.13 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= biology MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/ DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g} diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile index 619f9f46d3ab..77929ed61c08 100644 --- a/biology/treeviewx/Makefile +++ b/biology/treeviewx/Makefile @@ -8,7 +8,7 @@ PORTNAME= treeviewx PORTVERSION= 0.5.1 -PORTREVISION= 6 +PORTREVISION= 7 CATEGORIES= biology MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/${PORTVERSION:S/.1//}/ DISTNAME= tv-${PORTVERSION} diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile index 7743131b468e..08b2c216aa3d 100644 --- a/biology/xdrawchem/Makefile +++ b/biology/xdrawchem/Makefile @@ -7,7 +7,7 @@ PORTNAME= xdrawchem PORTVERSION= 1.9.9 -PORTREVISION= 9 +PORTREVISION= 10 CATEGORIES= biology MASTER_SITES= SF |