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| author | amdmi3 <amdmi3@FreeBSD.org> | 2016-06-21 17:05:06 +0800 |
|---|---|---|
| committer | amdmi3 <amdmi3@FreeBSD.org> | 2016-06-21 17:05:06 +0800 |
| commit | 95c934f9aeb4a0862dac1289586db8f30251070c (patch) | |
| tree | d02b42b448e2cdb7e57d5e0c8e557a401a3afade /biology | |
| parent | f8dcecd77af1bf52c20eedddde680c493ff18771 (diff) | |
| download | freebsd-ports-gnome-95c934f9aeb4a0862dac1289586db8f30251070c.tar.gz freebsd-ports-gnome-95c934f9aeb4a0862dac1289586db8f30251070c.tar.zst freebsd-ports-gnome-95c934f9aeb4a0862dac1289586db8f30251070c.zip | |
- Switch to options helpers
- Regenerate patches with `make makepatch`
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/wise/Makefile | 16 | ||||
| -rw-r--r-- | biology/wise/files/patch-src_models_phasemodel.c | 2 |
2 files changed, 11 insertions, 7 deletions
diff --git a/biology/wise/Makefile b/biology/wise/Makefile index f6385382960b..8c499fa90ead 100644 --- a/biology/wise/Makefile +++ b/biology/wise/Makefile @@ -10,8 +10,6 @@ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Intelligent algorithms for DNA searches -OPTIONS_DEFINE= DOCS EXAMPLES - BUILD_WRKSRC= ${WRKSRC}/src USES= pkgconfig @@ -20,10 +18,6 @@ MAKEFILE= makefile SUB_FILES= pkg-message -PORTDOCS= * -PORTEXAMPLES= * -PLIST_FILES= ${BINFILES:S,^,bin/,} ${DATAFILES:S,^,%%DATADIR%%/,} - # # Actually want an 'ALL_TARGET = all perl' which then requires # 'USE_PERL5= yes' but the perl sub-build is currently broken. @@ -42,6 +36,12 @@ DATAFILES= BLOSUM30.bla BLOSUM45.bla BLOSUM62.bla BLOSUM80.bla aa.rnd \ human.stats idenity.bla methods pb.gf pombe.gf tm.pri \ wise.2 wise.per worm.gf +PORTDOCS= * +PORTEXAMPLES= * +PLIST_FILES= ${BINFILES:S,^,bin/,} ${DATAFILES:S,^,%%DATADIR%%/,} + +OPTIONS_DEFINE= DOCS EXAMPLES + post-patch: @${FIND} ${BUILD_WRKSRC} -name "makefile" | ${XARGS} \ ${REINPLACE_CMD} -e \ @@ -60,8 +60,12 @@ do-install: @${MKDIR} ${STAGEDIR}${DATADIR} (cd ${WRKSRC}/wisecfg && ${INSTALL_DATA} ${DATAFILES} \ ${STAGEDIR}${DATADIR}) + +do-install-DOCS-on: @${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/docs && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) + +do-install-EXAMPLES-on: @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} (cd ${WRKSRC}/test_data && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) diff --git a/biology/wise/files/patch-src_models_phasemodel.c b/biology/wise/files/patch-src_models_phasemodel.c index fa7516acc7e9..e76d8cdac567 100644 --- a/biology/wise/files/patch-src_models_phasemodel.c +++ b/biology/wise/files/patch-src_models_phasemodel.c @@ -1,4 +1,4 @@ ---- src/models/phasemodel.c.orig 2007-09-08 08:05:32.000000000 +0000 +--- src/models/phasemodel.c.orig 2007-09-08 08:05:32 UTC +++ src/models/phasemodel.c @@ -3,6 +3,10 @@ extern "C" { #endif |