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authoredwin <edwin@FreeBSD.org>2006-05-04 07:26:35 +0800
committeredwin <edwin@FreeBSD.org>2006-05-04 07:26:35 +0800
commita9dd0eabfae8b9097f199b1d5e92ff53d5cffe99 (patch)
tree26f37b3f05f13c2831ea8168111fba49fa4d016b /biology
parent2389a1377e9ea59d1379c24641e52029e66cef5b (diff)
downloadfreebsd-ports-gnome-a9dd0eabfae8b9097f199b1d5e92ff53d5cffe99.tar.gz
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Remove USE_REINPLACE from all categories starting with B
Diffstat (limited to 'biology')
-rw-r--r--biology/L-Breeder/Makefile1
-rw-r--r--biology/ariadne/Makefile1
-rw-r--r--biology/avida/Makefile1
-rw-r--r--biology/crimap/Makefile1
-rw-r--r--biology/distribfold/Makefile1
-rw-r--r--biology/dna-qc/Makefile1
-rw-r--r--biology/garlic/Makefile1
-rw-r--r--biology/gff2ps/Makefile1
-rw-r--r--biology/gperiodic/Makefile1
-rw-r--r--biology/grappa/Makefile1
-rw-r--r--biology/libgenome/Makefile1
-rw-r--r--biology/lsysexp/Makefile1
-rw-r--r--biology/migrate/Makefile1
-rw-r--r--biology/molden/Makefile1
-rw-r--r--biology/povchem/Makefile1
-rw-r--r--biology/primer3/Makefile1
-rw-r--r--biology/pymol/Makefile1
-rw-r--r--biology/sim4/Makefile2
-rw-r--r--biology/tinker/Makefile1
-rw-r--r--biology/wise/Makefile1
-rw-r--r--biology/xdrawchem/Makefile1
21 files changed, 0 insertions, 22 deletions
diff --git a/biology/L-Breeder/Makefile b/biology/L-Breeder/Makefile
index 3ba614d356e7..0558ca4a31c0 100644
--- a/biology/L-Breeder/Makefile
+++ b/biology/L-Breeder/Makefile
@@ -26,7 +26,6 @@ USE_ZIP= yes
USE_X_PREFIX= yes
USE_GL= yes
USE_GMAKE= yes
-USE_REINPLACE= yes
WX_CONFIG= ${X11BASE}/bin/wxgtk2-2.4-config
diff --git a/biology/ariadne/Makefile b/biology/ariadne/Makefile
index e477b5a3fd31..d271b5877e86 100644
--- a/biology/ariadne/Makefile
+++ b/biology/ariadne/Makefile
@@ -16,7 +16,6 @@ COMMENT= Programs to compare protein sequences and profiles
WRKSRC= ${WRKDIR}/SRC-${PORTVERSION}
USE_GMAKE= yes
-USE_REINPLACE= yes
post-patch:
@${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}| ; \
diff --git a/biology/avida/Makefile b/biology/avida/Makefile
index 825a3dc3b317..475e81256547 100644
--- a/biology/avida/Makefile
+++ b/biology/avida/Makefile
@@ -19,7 +19,6 @@ GNU_CONFIGURE= yes
CONFIGURE_ARGS= --enable-standard-prefix --datadir=${DATADIR} --enable-viewer
CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
USE_PERL5_BUILD= yes
-USE_REINPLACE= yes
.if !defined(WITHOUT_QT)
BUILD_DEPENDS+= qmake:${PORTSDIR}/devel/qmake
diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile
index 8a0bd108e72c..90d5d8ca2400 100644
--- a/biology/crimap/Makefile
+++ b/biology/crimap/Makefile
@@ -16,7 +16,6 @@ MAINTAINER= tonymaher@optusnet.com.au
COMMENT= Creation of multilocus linkage maps
NO_WRKSUBDIR= true
-USE_REINPLACE= yes
PROGRAMS= crimap
EXAMPLES= chr7a.gen demo.dat
diff --git a/biology/distribfold/Makefile b/biology/distribfold/Makefile
index ad0b77d8f747..eda101ddfffa 100644
--- a/biology/distribfold/Makefile
+++ b/biology/distribfold/Makefile
@@ -17,7 +17,6 @@ COMMENT= distributedfolding.org distributed protein folding project
ONLY_FOR_ARCHS= i386
USE_BZIP2= yes
-USE_REINPLACE= yes
USE_SIZE= yes
NO_BUILD= yes
diff --git a/biology/dna-qc/Makefile b/biology/dna-qc/Makefile
index b0a25b290cdb..6713757fec88 100644
--- a/biology/dna-qc/Makefile
+++ b/biology/dna-qc/Makefile
@@ -16,7 +16,6 @@ MAINTAINER= tonymaher@optusnet.com.au
COMMENT= A quality control algorithm for DNA sequencing projects
NO_WRKSUBDIR= true
-USE_REINPLACE= yes
EXAMPLES= README script.compare script.limits \
bact.all chromosomeIII.all human.all worm.all
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile
index cf78c720cec9..7a6a15a906d3 100644
--- a/biology/garlic/Makefile
+++ b/biology/garlic/Makefile
@@ -19,7 +19,6 @@ MAINTAINER= maho@FreeBSD.org
COMMENT= Molecular viewer, editor and visualization program
USE_XLIB= yes
-USE_REINPLACE= yes
USE_GMAKE= yes
ALL_TARGET= # empty
diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile
index c08892b2ffb2..1c18e7452eb0 100644
--- a/biology/gff2ps/Makefile
+++ b/biology/gff2ps/Makefile
@@ -20,7 +20,6 @@ RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \
GFF2PS_MAN= MANUAL_GFF2PS_v0.96.ps
PATCH_WRKSRC= ${WRKDIR}
-USE_REINPLACE= yes
NO_BUILD= yes
diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile
index 2ab83b0c3bb0..9350895de9ab 100644
--- a/biology/gperiodic/Makefile
+++ b/biology/gperiodic/Makefile
@@ -16,7 +16,6 @@ COMMENT= Displays a periodic table of the elements
USE_X_PREFIX= yes
USE_GNOME= gnomehier gtk20
-USE_REINPLACE= yes
ALL_TARGET= ${PORTNAME}
LANGS= da fr pl sv tr
diff --git a/biology/grappa/Makefile b/biology/grappa/Makefile
index f3bc53433373..c6df3203e160 100644
--- a/biology/grappa/Makefile
+++ b/biology/grappa/Makefile
@@ -15,7 +15,6 @@ MAINTAINER= dbader@ece.unm.edu
COMMENT= Genome Rearrangements Analysis and Phylogeny Software
USE_GMAKE= yes
-USE_REINPLACE= yes
PLIST_FILES= bin/grappa bin/invdist bin/distmat
diff --git a/biology/libgenome/Makefile b/biology/libgenome/Makefile
index 0347c45423cb..6b8f7312125b 100644
--- a/biology/libgenome/Makefile
+++ b/biology/libgenome/Makefile
@@ -17,7 +17,6 @@ MAINTAINER= ports@FreeBSD.org
COMMENT= Toolkit for developing bioinformatic related software in C++
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}
-USE_REINPLACE= yes
GNU_CONFIGURE= yes
CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
INSTALLS_SHLIB= yes
diff --git a/biology/lsysexp/Makefile b/biology/lsysexp/Makefile
index e4ef4392b83c..839d1d681214 100644
--- a/biology/lsysexp/Makefile
+++ b/biology/lsysexp/Makefile
@@ -19,7 +19,6 @@ WRKSRC= ${WRKDIR}/lsysexp-0.67
USE_X_PREFIX= yes
USE_GNOME= gtk20
GNU_CONFIGURE= yes
-USE_REINPLACE= yes
post-patch:
@${REINPLACE_CMD} -e \
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile
index a2d2d78e74b2..351bc6e5966b 100644
--- a/biology/migrate/Makefile
+++ b/biology/migrate/Makefile
@@ -17,7 +17,6 @@ COMMENT= A program to estimate population sizes and migration rates
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}/src
GNU_CONFIGURE= yes
CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
-USE_REINPLACE= yes
MAN1= migrate.1
MLINKS= migrate.1 migrate-n.1
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index c3cccad52deb..0e2fd306947c 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -25,7 +25,6 @@ RESTRICTED= "free for academic, non profit usage;"
NO_CDROM= "Do not re-distribute source and executable."
NO_PACKAGE= "Though the source codes are accessible, the author is hoping for distribution in an original form."
MAKEFILE= ${WRKSRC}/makefile
-USE_REINPLACE= yes
.include <bsd.port.pre.mk>
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index bfcc9a1ddfae..0536e1e852a8 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -20,7 +20,6 @@ COMMENT= Simple yet powerful tool to generate POV from a PDB file
RUN_DEPENDS= povray:${PORTSDIR}/graphics/povray
NO_WRKSUBDIR= yes
-USE_REINPLACE= yes
DIST_SUBDIR= povchem
DEFS= -DDATADIR=\"${PREFIX}/share/povchem\" \
diff --git a/biology/primer3/Makefile b/biology/primer3/Makefile
index 75c8d91bcb20..08497fbb4b15 100644
--- a/biology/primer3/Makefile
+++ b/biology/primer3/Makefile
@@ -14,7 +14,6 @@ DISTNAME= ${PORTNAME}_${PORTVERSION}
MAINTAINER= tonymaher@optusnet.com.au
COMMENT= Primer3 helps to choose primers for PCR reactions
-USE_REINPLACE= yes
WRKSRC= ${WRKDIR}/${DISTNAME}/src
DOCUMENTS= README example
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index bf0094db674e..9cf17a38e4b1 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -24,7 +24,6 @@ LIB_DEPENDS= glut.4:${PORTSDIR}/graphics/libglut \
WRKSRC= ${WRKDIR}/pymol-${PORTVERSION}
USE_GMAKE= yes
-USE_REINPLACE= yes
USE_PYTHON= yes
.include <bsd.port.pre.mk>
diff --git a/biology/sim4/Makefile b/biology/sim4/Makefile
index 7864d6efa064..c447e8a7d12a 100644
--- a/biology/sim4/Makefile
+++ b/biology/sim4/Makefile
@@ -16,8 +16,6 @@ COMMENT= An algorithm for aligning expressed DNA with genomic sequences
WRKSRC= ${WRKDIR}/sim4.${PORTVERSION:S/./-/g}
-USE_REINPLACE= yes
-
ALL_TARGET= sim4
PLIST_FILES= bin/sim4
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 0b6f614787d9..9fb00255526f 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -24,7 +24,6 @@ WRKSRC= ${WRKDIR}/tinker/source
MAKEFILE= ${WRKDIR}/tinker/make/Makefile
ALL_TARGET= all listing
INSTALL_TARGET= rename
-USE_REINPLACE= yes
RESTRICTED= author requests no distribution except from his FTP site
DOCS= README *.pdf *.txt release*
diff --git a/biology/wise/Makefile b/biology/wise/Makefile
index ca6d025b93a1..67cd27884d80 100644
--- a/biology/wise/Makefile
+++ b/biology/wise/Makefile
@@ -16,7 +16,6 @@ COMMENT= Intelligent algorithms for DNA searches
WRKTOP= ${WRKDIR}/${DISTNAME}
WRKSRC= ${WRKTOP}/src
-USE_REINPLACE= yes
MAKEFILE= makefile
#
diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile
index 5367b90326d1..98f2d8bf6f44 100644
--- a/biology/xdrawchem/Makefile
+++ b/biology/xdrawchem/Makefile
@@ -28,7 +28,6 @@ QTCFGLIBS+= ${PTHREAD_LIBS}
QTCPPFLAGS+= ${PTHREAD_CFLAGS}
USE_GMAKE= yes
USE_QT_VER= 3
-USE_REINPLACE= yes
USE_X_PREFIX= yes
pre-configure: