aboutsummaryrefslogtreecommitdiffstats
path: root/biology
diff options
context:
space:
mode:
authorrene <rene@FreeBSD.org>2013-07-27 03:19:20 +0800
committerrene <rene@FreeBSD.org>2013-07-27 03:19:20 +0800
commitc945ab9477002608dac69f344be7d3f1f1b7d511 (patch)
tree4c98d494bc4532b5dd5b19f4e47bcb3babf104c2 /biology
parent16876857cc4291ce83cf938fde7ea3a988e9a904 (diff)
downloadfreebsd-ports-gnome-c945ab9477002608dac69f344be7d3f1f1b7d511.tar.gz
freebsd-ports-gnome-c945ab9477002608dac69f344be7d3f1f1b7d511.tar.zst
freebsd-ports-gnome-c945ab9477002608dac69f344be7d3f1f1b7d511.zip
KDE3 and QT3 expired on 2013-07-01, remove these ports.
Unfortunately, this also affects some ports using QT3 as a GUI toolkit. Changes to infrastructure files: - bsd.kde.mk : obsolete, remove - bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while - CHANGES : document the removals from bsd.port.mk - KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead) - MOVED : add the removed ports PR: ports/180745 Submitted by: rene Approved by: portmgr (bapt) Exp-run by: bapt
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/xdrawchem/Makefile37
-rw-r--r--biology/xdrawchem/distinfo2
-rw-r--r--biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp11
-rw-r--r--biology/xdrawchem/pkg-descr10
-rw-r--r--biology/xdrawchem/pkg-plist126
6 files changed, 0 insertions, 187 deletions
diff --git a/biology/Makefile b/biology/Makefile
index fd8298b4944d..fefff2cc9379 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -97,7 +97,6 @@
SUBDIR += ugene
SUBDIR += velvet
SUBDIR += wise
- SUBDIR += xdrawchem
SUBDIR += xmolwt
.include <bsd.port.subdir.mk>
diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile
deleted file mode 100644
index 84c7671d5bad..000000000000
--- a/biology/xdrawchem/Makefile
+++ /dev/null
@@ -1,37 +0,0 @@
-# Created by: trevor
-# $FreeBSD$
-
-PORTNAME= xdrawchem
-PORTVERSION= 1.9.9
-PORTREVISION= 11
-CATEGORIES= biology
-MASTER_SITES= SF
-
-MAINTAINER= hemi@puresimplicity.net
-COMMENT= Chemical drawing program
-
-LIB_DEPENDS= openbabel:${PORTSDIR}/science/openbabel
-
-GNU_CONFIGURE= yes
-USE_GMAKE= yes
-USE_QT_VER= 3
-
-CONFIGURE_ENV= QTINCDIR="${LOCALBASE}/include" \
- QTLIBDIR="${LOCALBASE}/lib"
-LDFLAGS+= -lm
-
-MAKE_ARGS+= LDFLAGS+="-lqt-mt ${PTHREAD_LIBS}"
-
-.include <bsd.port.pre.mk>
-
-.if ${ARCH}==sparc64
-BROKEN= does not compile on ${ARCH}
-.endif
-
-post-patch:
- @${REINPLACE_CMD} -e \
- 's|malloc\.h|stdlib.h|g' ${WRKSRC}/xdrawchem/application_ob.cpp
- @${REINPLACE_CMD} -e \
- 's|lround|(long int)rint|g' ${WRKSRC}/xdrawchem/*.cpp
-
-.include <bsd.port.post.mk>
diff --git a/biology/xdrawchem/distinfo b/biology/xdrawchem/distinfo
deleted file mode 100644
index 3da28cf44601..000000000000
--- a/biology/xdrawchem/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (xdrawchem-1.9.9.tar.gz) = 33e45ee8b937ba4ea77fb28adca66195943715a941039a95d0a4bed09d4cf9e3
-SIZE (xdrawchem-1.9.9.tar.gz) = 982481
diff --git a/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp b/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp
deleted file mode 100644
index 493499d74c7c..000000000000
--- a/biology/xdrawchem/files/patch-xdrawchem__application_ob.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./xdrawchem/application_ob.cpp.orig 2005-11-30 03:47:14.000000000 +0000
-+++ ./xdrawchem/application_ob.cpp 2012-10-30 14:37:35.092762310 +0000
-@@ -87,7 +87,7 @@
- OBFormat *inFormat = NULL;
-
- if (infilter.left(2) == "--") {
-- inFormat = Conv.FormatFromExt(infile);
-+ inFormat = Conv.FormatFromExt(infile.ascii());
- if (inFormat == NULL) {
- QMessageBox::warning( 0, tr("Could not determine file type"),
- tr("Please select a file type from the list.") );
diff --git a/biology/xdrawchem/pkg-descr b/biology/xdrawchem/pkg-descr
deleted file mode 100644
index 3f28ca7a0fa1..000000000000
--- a/biology/xdrawchem/pkg-descr
+++ /dev/null
@@ -1,10 +0,0 @@
-from the Web page and the Freshmeat listing:
-
-XDrawChem is a program for drawing chemical structures in two
-dimensions. It comes with a library of amino acids and nucleic
-acids. It can read and write MDL Molfiles, read and write CML
-(Chemical Markup Language), read (some?) ChemDraw XML and binary
-files, and export to EPS. It can predict 13C NMR and simple IR
-spectra. It works under Unix or Windows.
-
-WWW: http://xdrawchem.sourceforge.net
diff --git a/biology/xdrawchem/pkg-plist b/biology/xdrawchem/pkg-plist
deleted file mode 100644
index a677daf12969..000000000000
--- a/biology/xdrawchem/pkg-plist
+++ /dev/null
@@ -1,126 +0,0 @@
-bin/xdrawchem
-%%DATADIR%%/6ring_boat.cml
-%%DATADIR%%/6ring_chair.cml
-%%DATADIR%%/adenine.cml
-%%DATADIR%%/alanine.cml
-%%DATADIR%%/anthracene.cml
-%%DATADIR%%/arginine.cml
-%%DATADIR%%/asparagine.cml
-%%DATADIR%%/aspartic_acid.cml
-%%DATADIR%%/back.xpm
-%%DATADIR%%/benzene.cml
-%%DATADIR%%/benzene.png
-%%DATADIR%%/biotin.cml
-%%DATADIR%%/biphenyl.cml
-%%DATADIR%%/boc.cml
-%%DATADIR%%/caslist.txt
-%%DATADIR%%/cyclobutane.cml
-%%DATADIR%%/cycloheptane.cml
-%%DATADIR%%/cyclohexane.cml
-%%DATADIR%%/cyclohexane.png
-%%DATADIR%%/cyclooctane.cml
-%%DATADIR%%/cyclopentadiene-sp.cml
-%%DATADIR%%/cyclopentadiene.cml
-%%DATADIR%%/cyclopentane.cml
-%%DATADIR%%/cyclopentane.png
-%%DATADIR%%/cyclopropane.cml
-%%DATADIR%%/cysteine.cml
-%%DATADIR%%/cytosine.cml
-%%DATADIR%%/d-fructose.cml
-%%DATADIR%%/d-glucose.cml
-%%DATADIR%%/dabcyl.cml
-%%DATADIR%%/dabsyl.cml
-%%DATADIR%%/dansyl.cml
-%%DATADIR%%/deoxyribose.cml
-%%DATADIR%%/doc/COPYRIGHT.txt
-%%DATADIR%%/doc/GPL.txt
-%%DATADIR%%/doc/HISTORY.txt
-%%DATADIR%%/doc/arrowtool.png
-%%DATADIR%%/doc/boldtool.png
-%%DATADIR%%/doc/brackettool.png
-%%DATADIR%%/doc/cinna.png
-%%DATADIR%%/doc/color_pulldown.png
-%%DATADIR%%/doc/copytool.png
-%%DATADIR%%/doc/curvearrowtool.png
-%%DATADIR%%/doc/cuttool.png
-%%DATADIR%%/doc/dashtool.png
-%%DATADIR%%/doc/downtool.png
-%%DATADIR%%/doc/draw.html
-%%DATADIR%%/doc/edit.html
-%%DATADIR%%/doc/editmenu.html
-%%DATADIR%%/doc/erasetool.png
-%%DATADIR%%/doc/filemenu.html
-%%DATADIR%%/doc/fileopen.png
-%%DATADIR%%/doc/fileprint.png
-%%DATADIR%%/doc/files.html
-%%DATADIR%%/doc/filesave.png
-%%DATADIR%%/doc/font_pulldown.png
-%%DATADIR%%/doc/formatmenu.html
-%%DATADIR%%/doc/functions.html
-%%DATADIR%%/doc/groupmenu.html
-%%DATADIR%%/doc/helpmenu.html
-%%DATADIR%%/doc/index.html
-%%DATADIR%%/doc/italictool.png
-%%DATADIR%%/doc/linetool.png
-%%DATADIR%%/doc/molinfo.html
-%%DATADIR%%/doc/pastetool.png
-%%DATADIR%%/doc/ringtool.png
-%%DATADIR%%/doc/ringtoolbar.png
-%%DATADIR%%/doc/selecttool.png
-%%DATADIR%%/doc/spectra.html
-%%DATADIR%%/doc/subscript.png
-%%DATADIR%%/doc/superscript.png
-%%DATADIR%%/doc/symboltool.png
-%%DATADIR%%/doc/text.html
-%%DATADIR%%/doc/texttool.png
-%%DATADIR%%/doc/thick_pulldown.png
-%%DATADIR%%/doc/toolbar.html
-%%DATADIR%%/doc/toolmenu.html
-%%DATADIR%%/doc/underlinetool.png
-%%DATADIR%%/doc/uptool.png
-%%DATADIR%%/edans.cml
-%%DATADIR%%/fmoc.cml
-%%DATADIR%%/forward.xpm
-%%DATADIR%%/glutamic_acid.cml
-%%DATADIR%%/glutamine.cml
-%%DATADIR%%/glycine.cml
-%%DATADIR%%/guanine.cml
-%%DATADIR%%/histidine.cml
-%%DATADIR%%/home.xpm
-%%DATADIR%%/imidazole.cml
-%%DATADIR%%/imidazole.png
-%%DATADIR%%/indole.cml
-%%DATADIR%%/isoleucine.cml
-%%DATADIR%%/leucine.cml
-%%DATADIR%%/lysine.cml
-%%DATADIR%%/methionine.cml
-%%DATADIR%%/naphthalene.cml
-%%DATADIR%%/nitrophenylalanine.cml
-%%DATADIR%%/phenylalanine.cml
-%%DATADIR%%/proline.cml
-%%DATADIR%%/purine.cml
-%%DATADIR%%/pyrimidine.cml
-%%DATADIR%%/retro.txt
-%%DATADIR%%/ribose.cml
-%%DATADIR%%/serine.cml
-%%DATADIR%%/statine.cml
-%%DATADIR%%/steroid.cml
-%%DATADIR%%/threonine.cml
-%%DATADIR%%/thymine.cml
-%%DATADIR%%/tryptophan.cml
-%%DATADIR%%/tyrosine.cml
-%%DATADIR%%/uracil.cml
-%%DATADIR%%/valine.cml
-%%DATADIR%%/xdrawchem-icon.png
-%%DATADIR%%/xdrawchem_da.qm
-%%DATADIR%%/xdrawchem_de.qm
-%%DATADIR%%/xdrawchem_en.qm
-%%DATADIR%%/xdrawchem_es.qm
-%%DATADIR%%/xdrawchem_fr.qm
-%%DATADIR%%/xdrawchem_it.qm
-%%DATADIR%%/xdrawchem_nl.qm
-%%DATADIR%%/xdrawchem_pl.qm
-%%DATADIR%%/xdrawchem_ru.qm
-%%DATADIR%%/xdrawchemrc
-@dirrm %%DATADIR%%/doc
-@dirrm %%DATADIR%%