- update to jpeg-8

18 files changed, 19 insertions, 18 deletions

diff --git a/biology/L-Breeder/Makefile b/biology/L-Breeder/Makefile
index 78686deda56f..7261c343133e 100644
--- a/biology/L-Breeder/Makefile
+++ b/biology/L-Breeder/Makefile
@@ -8,7 +8,7 @@
 
 PORTNAME=	LBreeder
 PORTVERSION=	1.0
-PORTREVISION=	13
+PORTREVISION=	14
 CATEGORIES=	biology
 MASTER_SITES=	http://www.simonyi.ox.ac.uk/dawkins/software/yan/L-Breeder/
 DISTNAME=	${PORTNAME}-source
diff --git a/biology/boinc-simap/Makefile b/biology/boinc-simap/Makefile
index 9d274315bab6..eeba9956a15f 100644
--- a/biology/boinc-simap/Makefile
+++ b/biology/boinc-simap/Makefile
@@ -6,7 +6,7 @@
 
 PORTNAME=	boinc-simap
 PORTVERSION=	${SIMAP_VERSION}.${HMMER_VERSION}
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology
 MASTER_SITES=	http://boinc.bio.wzw.tum.de/boincsimap/download/
 DISTNAME=	${SIMAP_BINARY} ${HMMER_BINARY}
diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
index d5fef6e33935..3e97544c852c 100644
--- a/biology/embassy/Makefile
+++ b/biology/embassy/Makefile
@@ -8,7 +8,7 @@
 
 PORTNAME=	embassy
 PORTVERSION=	6.0.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/old/${PORTVERSION}/
 DIST_SUBDIR=	emboss
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
index 2b9078428802..8ae70b6afba9 100644
--- a/biology/emboss/Makefile
+++ b/biology/emboss/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	emboss
 PORTVERSION=	6.0.1
-PORTREVISION=	1
+PORTREVISION=	2
 RELEASE=	${PORTNAME:U}-${PORTVERSION}
 CATEGORIES=	biology
 MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/old/${PORTVERSION}/
diff --git a/biology/genpak/Makefile b/biology/genpak/Makefile
index 5b1ff0976afe..ab9d1769de72 100644
--- a/biology/genpak/Makefile
+++ b/biology/genpak/Makefile
@@ -8,7 +8,7 @@
 
 PORTNAME=	genpak
 PORTVERSION=	0.26
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	biology
 MASTER_SITES=	http://www.bioinformatics.org/genpak/download/
 DISTNAME=	gp-${PORTVERSION}
diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile
index a09c02eb9d33..32a65b2ef772 100644
--- a/biology/gperiodic/Makefile
+++ b/biology/gperiodic/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	gperiodic
 PORTVERSION=	2.0.10
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology
 MASTER_SITES=	http://www.frantz.fi/software/
 
diff --git a/biology/lsysexp/Makefile b/biology/lsysexp/Makefile
index 9df827de0ea4..e04596afd5fe 100644
--- a/biology/lsysexp/Makefile
+++ b/biology/lsysexp/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	lsysexp
 PORTVERSION=	0.67
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	biology
 MASTER_SITES=	http://coscorrosa.com/programs/${PORTNAME}/download/ \
 		http://freebsd.unixfreunde.de/sources/
diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index 83b44017672c..665af0ce2df0 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -7,6 +7,7 @@
 
 PORTNAME=	Bio-Das
 PORTVERSION=	1.14
+PORTREVISION=	1
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile
index 744546201f63..fdba9f4d1519 100644
--- a/biology/p5-Bio-Graphics/Makefile
+++ b/biology/p5-Bio-Graphics/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	Bio-Graphics
 PORTVERSION=	1.995
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index e06af61a720a..263a1a415eba 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	Bio-Phylo
 PORTVERSION=	0.16
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology perl5
 MASTER_SITES=	CPAN
 PKGNAMEPREFIX=	p5-
diff --git a/biology/p5-bioperl-run/Makefile b/biology/p5-bioperl-run/Makefile
index 17f8da419c02..918abe899628 100644
--- a/biology/p5-bioperl-run/Makefile
+++ b/biology/p5-bioperl-run/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	bioperl-run
 PORTVERSION=	1.6.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology perl5
 MASTER_SITES=	http://bioperl.org/DIST/ \
 		CPAN
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index a1438ea6313d..b4599d35cbff 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	bioperl
 PORTVERSION=	1.6.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology perl5
 MASTER_SITES=	http://bioperl.org/DIST/ \
 		CPAN
diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
index b6e9d4d064fd..3861e28bb5c4 100644
--- a/biology/povchem/Makefile
+++ b/biology/povchem/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	povchem
 PORTVERSION=	1.0
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology graphics
 MASTER_SITES=	http://www.chemicalgraphics.com/paul/PC_Dist/v1.00/
 DISTFILES=	povchem.c \
diff --git a/biology/protomol/Makefile b/biology/protomol/Makefile
index 0936097f3ed9..409a7ce5bf4e 100644
--- a/biology/protomol/Makefile
+++ b/biology/protomol/Makefile
@@ -6,7 +6,7 @@
 
 PORTNAME=	protomol
 PORTVERSION=	2.0.3
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	biology
 MASTER_SITES=	SF/${PORTNAME}/ProtoMol/${PORTVERSION}
 DISTNAME=	${PORTNAME}-${PORTVERSION}-tar.gz
@@ -16,7 +16,7 @@ MAINTAINER=	sangwoos@gmail.com
 COMMENT=	OO, component based, framework for molecular dynamics (MD) simulations
 
 LIB_DEPENDS=	png.5:${PORTSDIR}/graphics/png \
-		jpeg.10:${PORTSDIR}/graphics/jpeg \
+		jpeg.11:${PORTSDIR}/graphics/jpeg \
 		tiff.4:${PORTSDIR}/graphics/tiff
 
 GNU_CONFIGURE=	yes
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index 8d428956fe93..8d0b0fa086bb 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -6,7 +6,7 @@
 
 PORTNAME=	pymol
 PORTVERSION=	1.0r2
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology python
 MASTER_SITES=	${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|}
 
diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index 9d793ce45563..fc1c4a9fce4f 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -8,7 +8,7 @@
 
 PORTNAME=	seaview
 PORTVERSION=	2006.02.13
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	biology
 MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/
 DISTNAME=	${PORTNAME}${PORTVERSION:S/.//g}
diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
index 6ad2386fba81..13ca30f34de0 100644
--- a/biology/treeviewx/Makefile
+++ b/biology/treeviewx/Makefile
@@ -8,7 +8,7 @@
 
 PORTNAME=	treeviewx
 PORTVERSION=	0.5.1
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	biology
 MASTER_SITES=	http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/${PORTVERSION:S/.1//}/
 DISTNAME=	tv-${PORTVERSION}
diff --git a/biology/xdrawchem/Makefile b/biology/xdrawchem/Makefile
index 4ac915ed3adb..6c182e317fca 100644
--- a/biology/xdrawchem/Makefile
+++ b/biology/xdrawchem/Makefile
@@ -7,7 +7,7 @@
 
 PORTNAME=	xdrawchem
 PORTVERSION=	1.9.9
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	biology
 MASTER_SITES=	SF