diff options
| author | jwb <jwb@FreeBSD.org> | 2018-09-20 22:10:52 +0800 |
|---|---|---|
| committer | jwb <jwb@FreeBSD.org> | 2018-09-20 22:10:52 +0800 |
| commit | aca891339b5712c6a4095c1d376625ff8581a5a5 (patch) | |
| tree | 0b41ab211ec34fb59a6aad037f32e33ab0460b02 /biology | |
| parent | 62afc396eaae959b4093ea952a0a1dc9068f0217 (diff) | |
| download | freebsd-ports-gnome-aca891339b5712c6a4095c1d376625ff8581a5a5.tar.gz freebsd-ports-gnome-aca891339b5712c6a4095c1d376625ff8581a5a5.tar.zst freebsd-ports-gnome-aca891339b5712c6a4095c1d376625ff8581a5a5.zip | |
biology/py-cutadapt: Upgrade to 1.18
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D17099
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/py-cutadapt/Makefile | 10 | ||||
| -rw-r--r-- | biology/py-cutadapt/distinfo | 6 | ||||
| -rw-r--r-- | biology/py-cutadapt/pkg-plist | 43 |
3 files changed, 9 insertions, 50 deletions
diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile index fbdd81df4650..98881d7cc963 100644 --- a/biology/py-cutadapt/Makefile +++ b/biology/py-cutadapt/Makefile @@ -1,20 +1,22 @@ # $FreeBSD$ PORTNAME= cutadapt -PORTVERSION= 1.14 +PORTVERSION= 1.18 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org -COMMENT= Finds and removes adapter sequences, primers, poly-A tails, etc +COMMENT= Trim adapters from high-throughput sequencing reads LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>0:archivers/py-xopen@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}xopen>=0.3.2:archivers/py-xopen@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}bz2file>=0.98:archivers/py-bz2file@${PY_FLAVOR} USES= python -USE_PYTHON= distutils py3kplist +USE_PYTHON= autoplist concurrent distutils post-install: @${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/cutadapt/*.so diff --git a/biology/py-cutadapt/distinfo b/biology/py-cutadapt/distinfo index ccd64bb2211b..11a0fb6618e8 100644 --- a/biology/py-cutadapt/distinfo +++ b/biology/py-cutadapt/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1509552013 -SHA256 (cutadapt-1.14.tar.gz) = f32990a8b2f8b53f8f4c723ada3d256a8e8476febdd296506764cc8e83397d3d -SIZE (cutadapt-1.14.tar.gz) = 283631 +TIMESTAMP = 1536508727 +SHA256 (cutadapt-1.18.tar.gz) = 17aabf9b19d09a426d96030a83ad003c97b26dba9d45bf5570d33088fcd533f9 +SIZE (cutadapt-1.18.tar.gz) = 342050 diff --git a/biology/py-cutadapt/pkg-plist b/biology/py-cutadapt/pkg-plist deleted file mode 100644 index 6ec03a72dd24..000000000000 --- a/biology/py-cutadapt/pkg-plist +++ /dev/null @@ -1,43 +0,0 @@ -bin/cutadapt -%%PYTHON_SITELIBDIR%%/cutadapt/__init__.py -%%PYTHON_SITELIBDIR%%/cutadapt/__init__.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/__init__.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/_align.so -%%PYTHON_SITELIBDIR%%/cutadapt/_qualtrim.so -%%PYTHON_SITELIBDIR%%/cutadapt/_seqio.so -%%PYTHON_SITELIBDIR%%/cutadapt/_version.py -%%PYTHON_SITELIBDIR%%/cutadapt/_version.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/_version.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/adapters.py -%%PYTHON_SITELIBDIR%%/cutadapt/adapters.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/adapters.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/align.py -%%PYTHON_SITELIBDIR%%/cutadapt/align.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/align.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/colorspace.py -%%PYTHON_SITELIBDIR%%/cutadapt/colorspace.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/colorspace.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/compat.py -%%PYTHON_SITELIBDIR%%/cutadapt/compat.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/compat.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/filters.py -%%PYTHON_SITELIBDIR%%/cutadapt/filters.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/filters.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/modifiers.py -%%PYTHON_SITELIBDIR%%/cutadapt/modifiers.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/modifiers.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/qualtrim.py -%%PYTHON_SITELIBDIR%%/cutadapt/qualtrim.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/qualtrim.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/report.py -%%PYTHON_SITELIBDIR%%/cutadapt/report.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/report.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/__init__.py -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/__init__.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/__init__.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/cutadapt.py -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/cutadapt.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/scripts/cutadapt.pyo -%%PYTHON_SITELIBDIR%%/cutadapt/seqio.py -%%PYTHON_SITELIBDIR%%/cutadapt/seqio.pyc -%%PYTHON_SITELIBDIR%%/cutadapt/seqio.pyo |