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authordes <des@FreeBSD.org>2018-10-06 21:06:42 +0800
committerdes <des@FreeBSD.org>2018-10-06 21:06:42 +0800
commit091caf4661b26a5f70d9b8e0409821418f5afdbb (patch)
tree0721b637b4bcfc0a8ff2a945bdcb7e68f8993680 /biology
parenteb79e9b6a267227492e837fea536cf5c224c7a2d (diff)
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or run-depends-list. Approved by: portmgr (adamw)
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-AcePerl/Makefile4
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/Makefile4
-rw-r--r--biology/p5-Bio-Coordinate/Makefile4
-rw-r--r--biology/p5-Bio-Das-Lite/Makefile4
-rw-r--r--biology/p5-Bio-Das/Makefile4
-rw-r--r--biology/p5-Bio-FeatureIO/Makefile4
-rw-r--r--biology/p5-Bio-GFF3/Makefile4
-rw-r--r--biology/p5-Bio-Glite/Makefile4
-rw-r--r--biology/p5-Bio-Graphics/Makefile4
-rw-r--r--biology/p5-Bio-MAGETAB/Makefile4
-rw-r--r--biology/p5-Bio-NEXUS/Makefile4
-rw-r--r--biology/p5-Bio-Phylo/Makefile4
-rw-r--r--biology/p5-Bio-SCF/Makefile4
-rw-r--r--biology/p5-BioPerl-Run/Makefile4
-rw-r--r--biology/p5-BioPerl/Makefile4
15 files changed, 30 insertions, 30 deletions
diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile
index 5e573cd41fe4..f392a0786013 100644
--- a/biology/p5-AcePerl/Makefile
+++ b/biology/p5-AcePerl/Makefile
@@ -14,8 +14,8 @@ COMMENT= Perl5 interface to the ACEDB genome database system
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-Cache-Cache>=0:devel/p5-Cache-Cache
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Cache-Cache>=0:devel/p5-Cache-Cache
MAKE_JOBS_UNSAFE= yes
USES= perl5
diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile
index 035f3aef8c3a..8b2c9e6e9b2a 100644
--- a/biology/p5-Bio-ASN1-EntrezGene/Makefile
+++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile
@@ -16,8 +16,8 @@ LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl
NO_ARCH= yes
USES= perl5
diff --git a/biology/p5-Bio-Coordinate/Makefile b/biology/p5-Bio-Coordinate/Makefile
index 2fec0c96e03b..f8ef5d839cde 100644
--- a/biology/p5-Bio-Coordinate/Makefile
+++ b/biology/p5-Bio-Coordinate/Makefile
@@ -14,8 +14,8 @@ LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl
NO_ARCH= yes
USE_PERL5= configure
diff --git a/biology/p5-Bio-Das-Lite/Makefile b/biology/p5-Bio-Das-Lite/Makefile
index 7472b6eb4d80..330ff878a6f8 100644
--- a/biology/p5-Bio-Das-Lite/Makefile
+++ b/biology/p5-Bio-Das-Lite/Makefile
@@ -14,10 +14,10 @@ COMMENT= Perl extension for the DAS (HTTP+XML) Protocol
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-Readonly>=1.03:devel/p5-Readonly \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Readonly>=1.03:devel/p5-Readonly \
p5-libwww>=0:www/p5-libwww \
p5-WWW-Curl>=4.07:www/p5-WWW-Curl
-RUN_DEPENDS:= ${BUILD_DEPENDS}
USES= perl5
USE_PERL5= modbuild
diff --git a/biology/p5-Bio-Das/Makefile b/biology/p5-Bio-Das/Makefile
index 41a930813f55..b8ef669e867e 100644
--- a/biology/p5-Bio-Das/Makefile
+++ b/biology/p5-Bio-Das/Makefile
@@ -14,10 +14,10 @@ COMMENT= Client-side library for Distributed Genome Annotation System
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
p5-HTML-Parser>=3:www/p5-HTML-Parser \
p5-libwww>=5:www/p5-libwww
-RUN_DEPENDS:= ${BUILD_DEPENDS}
NO_ARCH= yes
USES= perl5
diff --git a/biology/p5-Bio-FeatureIO/Makefile b/biology/p5-Bio-FeatureIO/Makefile
index 2f85c893b768..809eddb61c99 100644
--- a/biology/p5-Bio-FeatureIO/Makefile
+++ b/biology/p5-Bio-FeatureIO/Makefile
@@ -14,12 +14,12 @@ LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl \
p5-Tree-DAG_Node>=0:devel/p5-Tree-DAG_Node \
p5-URI>=0:net/p5-URI \
p5-XML-DOM>=0:textproc/p5-XML-DOM \
p5-XML-DOM-XPath>=0:textproc/p5-XML-DOM-XPath
-RUN_DEPENDS:= ${BUILD_DEPENDS}
NO_ARCH= yes
USE_PERL5= configure
diff --git a/biology/p5-Bio-GFF3/Makefile b/biology/p5-Bio-GFF3/Makefile
index 955c5700fb8c..25fe0509e0e8 100644
--- a/biology/p5-Bio-GFF3/Makefile
+++ b/biology/p5-Bio-GFF3/Makefile
@@ -14,10 +14,10 @@ COMMENT= Fast low-level functions for parsing and formatting GFF3
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-File-ReadBackwards>=0:devel/p5-File-ReadBackwards \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-File-ReadBackwards>=0:devel/p5-File-ReadBackwards \
p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \
p5-URI>=0:net/p5-URI
-RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-IO-String>=0:devel/p5-IO-String
USES= perl5
diff --git a/biology/p5-Bio-Glite/Makefile b/biology/p5-Bio-Glite/Makefile
index ed0668d44584..58be4ad54db5 100644
--- a/biology/p5-Bio-Glite/Makefile
+++ b/biology/p5-Bio-Glite/Makefile
@@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
MAINTAINER= perl@FreeBSD.org
COMMENT= Perl Interface to G-language
-BUILD_DEPENDS= p5-libwww>=5:www/p5-libwww
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-libwww>=5:www/p5-libwww
USES= perl5
USE_PERL5= configure
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile
index f16627233186..9fc0800d336e 100644
--- a/biology/p5-Bio-Graphics/Makefile
+++ b/biology/p5-Bio-Graphics/Makefile
@@ -14,14 +14,14 @@ COMMENT= Generate GD Images of Bio::Seq Objects
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-Bio-Coordinate>=1.007000:biology/p5-Bio-Coordinate \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Bio-Coordinate>=1.007000:biology/p5-Bio-Coordinate \
p5-Bio-SCF>=1.01:biology/p5-Bio-SCF \
p5-BioPerl>=1.007000:biology/p5-BioPerl \
p5-CGI>=0:www/p5-CGI \
p5-GD>=2.30:graphics/p5-GD \
p5-GD-SVG>=0.32:graphics/p5-GD-SVG \
p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive
-RUN_DEPENDS:= ${BUILD_DEPENDS}
NO_ARCH= yes
USES= perl5
diff --git a/biology/p5-Bio-MAGETAB/Makefile b/biology/p5-Bio-MAGETAB/Makefile
index ce4faf061c89..c8b95d8236ad 100644
--- a/biology/p5-Bio-MAGETAB/Makefile
+++ b/biology/p5-Bio-MAGETAB/Makefile
@@ -13,7 +13,8 @@ COMMENT= Data model and utility API for the MAGE-TAB format
LICENSE= GPLv2
-BUILD_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
p5-DateTime>=0.43.02:devel/p5-DateTime \
p5-DateTime-Format-DateManip>=0.04:devel/p5-DateTime-Format-DateManip \
p5-Email-Valid>=0.179:mail/p5-Email-Valid \
@@ -24,7 +25,6 @@ BUILD_DEPENDS= p5-Date-Manip>=5.44:devel/p5-Date-Manip \
p5-Parse-RecDescent>=1.965.001:devel/p5-Parse-RecDescent \
p5-Text-CSV_XS>=0.32:textproc/p5-Text-CSV_XS \
p5-URI>=1.35:net/p5-URI
-RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-Test-Exception>=0.26:devel/p5-Test-Exception
USES= perl5
diff --git a/biology/p5-Bio-NEXUS/Makefile b/biology/p5-Bio-NEXUS/Makefile
index bba1732dbd31..2559e08c1512 100644
--- a/biology/p5-Bio-NEXUS/Makefile
+++ b/biology/p5-Bio-NEXUS/Makefile
@@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
MAINTAINER= perl@FreeBSD.org
COMMENT= Object-oriented Perl API for the NEXUS file format
-BUILD_DEPENDS= p5-Clone-PP>=1.02:devel/p5-Clone-PP
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Clone-PP>=1.02:devel/p5-Clone-PP
TEST_DEPENDS= p5-Test-Deep>=0.106:devel/p5-Test-Deep \
p5-Test-Pod>=0:devel/p5-Test-Pod \
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index cf6f40d3e1bb..68512e73a70e 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -15,7 +15,8 @@ LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE_ART10= ${WRKSRC}/COPYING
-BUILD_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
p5-BioPerl>=0:biology/p5-BioPerl \
p5-GD>=0:graphics/p5-GD \
p5-Math-CDF>=0:math/p5-Math-CDF \
@@ -29,7 +30,6 @@ BUILD_DEPENDS= p5-Archive-Zip>=0:archivers/p5-Archive-Zip \
p5-XML-Twig>=0:textproc/p5-XML-Twig \
p5-XML-XML2JSON>=0:textproc/p5-XML-XML2JSON \
p5-libxml>=0:textproc/p5-libxml
-RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-JSON>=0:converters/p5-JSON
NO_ARCH= yes
diff --git a/biology/p5-Bio-SCF/Makefile b/biology/p5-Bio-SCF/Makefile
index 7582862189d3..0013bfe5b43b 100644
--- a/biology/p5-Bio-SCF/Makefile
+++ b/biology/p5-Bio-SCF/Makefile
@@ -11,8 +11,8 @@ PKGNAMEPREFIX= p5-
MAINTAINER= wen@FreeBSD.org
COMMENT= Read and Update SCF Chromatographic Sequence Files
-BUILD_DEPENDS= ${LOCALBASE}/include/io_lib/scf.h:biology/iolib
-RUN_DEPENDS:= ${BUILD_DEPENDS}
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= ${LOCALBASE}/include/io_lib/scf.h:biology/iolib
CFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
diff --git a/biology/p5-BioPerl-Run/Makefile b/biology/p5-BioPerl-Run/Makefile
index 27a06f98bcb8..7c344b617cf9 100644
--- a/biology/p5-BioPerl-Run/Makefile
+++ b/biology/p5-BioPerl-Run/Makefile
@@ -15,7 +15,8 @@ LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
LICENSE_FILE_ART10= ${WRKSRC}/LICENSE
-BUILD_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
p5-Bio-FeatureIO>=0:biology/p5-Bio-FeatureIO \
p5-BioPerl>=1.007000:biology/p5-BioPerl \
p5-Config-Any>=0:devel/p5-Config-Any \
@@ -23,7 +24,6 @@ BUILD_DEPENDS= p5-Algorithm-Diff>=0:devel/p5-Algorithm-Diff \
p5-IO-String>=0:devel/p5-IO-String \
p5-IPC-Run>=0:devel/p5-IPC-Run \
p5-XML-Twig>=0:textproc/p5-XML-Twig
-RUN_DEPENDS:= ${BUILD_DEPENDS}
CONFLICTS= p5-bioperl-run-1.[13579]*
diff --git a/biology/p5-BioPerl/Makefile b/biology/p5-BioPerl/Makefile
index 55105152f73f..a6b2bbbbe69a 100644
--- a/biology/p5-BioPerl/Makefile
+++ b/biology/p5-BioPerl/Makefile
@@ -14,7 +14,8 @@ COMMENT= Collection of Perl modules for bioinformatics
LICENSE= ART10 GPLv1+
LICENSE_COMB= dual
-BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
+BUILD_DEPENDS= ${RUN_DEPENDS}
+RUN_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
p5-Array-Compare>=0:misc/p5-Array-Compare \
p5-CGI>=0:www/p5-CGI \
p5-Clone>=0:devel/p5-Clone \
@@ -51,7 +52,6 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:math/p5-Algorithm-Munkres \
p5-YAML>=0:textproc/p5-YAML \
p5-libwww>=0:www/p5-libwww \
p5-libxml>=0:textproc/p5-libxml
-RUN_DEPENDS:= ${BUILD_DEPENDS}
TEST_DEPENDS= p5-Test-Most>=0:devel/p5-Test-Most \
p5-URI>=0:net/p5-URI