Add migrate 1.2,

a program to estimate population sizes and
migration rates.

6 files changed, 63 insertions, 0 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 5632f6133881..d5e3377fe257 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -16,6 +16,7 @@
     SUBDIR += grappa
     SUBDIR += hmmer
     SUBDIR += kinemage
+    SUBDIR += migrate
     SUBDIR += molden
     SUBDIR += mopac
     SUBDIR += nab
diff --git a/biology/migrate/Makefile b/biology/migrate/Makefile
new file mode 100644
index 000000000000..730c5b452c72
--- /dev/null
+++ b/biology/migrate/Makefile
@@ -0,0 +1,34 @@
+# New ports collection makefile for:	migrate
+# Date created:		6 August 2001
+# Whom:	      		Johann Visagie <wjv@FreeBSD.org>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	migrate
+PORTVERSION=	1.2
+CATEGORIES=	biology
+MASTER_SITES=	ftp://evolution.genetics.washington.edu/pub/lamarc/migrate/
+DISTNAME=	${PORTNAME}-${PORTVERSION}.src
+
+MAINTAINER=	wjv@FreeBSD.org
+
+WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
+CONFIGURE_WRKSRC=	${WRKSRC}/src
+BUILD_WRKSRC=	${CONFIGURE_WRKSRC}
+INSTALL_WRKSRC=	${CONFIGURE_WRKSRC}
+GNU_CONFIGURE=	yes
+
+MAN1=		migrate.1
+
+post-install:
+	@ cd ${PREFIX}/bin && ${LN} -s migrate-n migrate
+.if !defined(NOPORTDOCS)
+	@ ${MKDIR} ${DOCSDIR}/graphics
+.for docfile in HISTORY HOWTO-PARALLEL README migrate.html
+	@ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR}
+.endfor
+	@ ${INSTALL_DATA} ${WRKSRC}/graphics/* ${DOCSDIR}/graphics
+.endif
+
+.include <bsd.port.mk>
diff --git a/biology/migrate/distinfo b/biology/migrate/distinfo
new file mode 100644
index 000000000000..bb6fc4fbd1f9
--- /dev/null
+++ b/biology/migrate/distinfo
@@ -0,0 +1 @@
+MD5 (migrate-1.2.src.tar.gz) = 697d75319a1b9fc75db59264691b8e43
diff --git a/biology/migrate/pkg-comment b/biology/migrate/pkg-comment
new file mode 100644
index 000000000000..1cf2d7f16689
--- /dev/null
+++ b/biology/migrate/pkg-comment
@@ -0,0 +1 @@
+A program to estimate population sizes and migration rates
diff --git a/biology/migrate/pkg-descr b/biology/migrate/pkg-descr
new file mode 100644
index 000000000000..126648f42468
--- /dev/null
+++ b/biology/migrate/pkg-descr
@@ -0,0 +1,14 @@
+Migrate estimates effective population sizes and past migration rates between
+two or "n" populations assuming a migration matrix model with asymmetric
+migration rates and different subpopulation sizes.  The n-population migrate
+can use sequence data, microsatellite data or electrophoretic data.
+
+Migrate forms part of the Lamarc (Likelihood Analysis with Metropolis
+Algorithm using Random Coalescence) suite.  See:
+
+  http://evolution.genetics.washington.edu/lamarc.html
+
+Author: Peter Beerli <beerli@genetics.washington.edu>
+WWW:    http://evolution.genetics.washington.edu/lamarc/migrate.html
+
+-- Johann Visagie <johann@FreeBSD.org>
diff --git a/biology/migrate/pkg-plist b/biology/migrate/pkg-plist
new file mode 100644
index 000000000000..ff43dc3f9d5b
--- /dev/null
+++ b/biology/migrate/pkg-plist
@@ -0,0 +1,12 @@
+bin/migrate
+bin/migrate-n
+%%PORTDOCS%%share/doc/migrate/HISTORY
+%%PORTDOCS%%share/doc/migrate/HOWTO-PARALLEL
+%%PORTDOCS%%share/doc/migrate/README
+%%PORTDOCS%%share/doc/migrate/graphics/librarian.gif
+%%PORTDOCS%%share/doc/migrate/graphics/mail.gif
+%%PORTDOCS%%share/doc/migrate/graphics/migrate.gif
+%%PORTDOCS%%share/doc/migrate/graphics/packet.gif
+%%PORTDOCS%%share/doc/migrate/migrate.html
+%%PORTDOCS%%@dirrm share/doc/migrate/graphics
+%%PORTDOCS%%@dirrm share/doc/migrate