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| author | sunpoet <sunpoet@FreeBSD.org> | 2016-12-18 23:26:11 +0800 |
|---|---|---|
| committer | sunpoet <sunpoet@FreeBSD.org> | 2016-12-18 23:26:11 +0800 |
| commit | c22d42c856a20a8422c8d45fc53926334cb1003f (patch) | |
| tree | b118063b5f52dadd4be18adbb299a066240d4f1b /biology | |
| parent | 446481098c76427d826e790f9894b846b5a10226 (diff) | |
| download | freebsd-ports-gnome-c22d42c856a20a8422c8d45fc53926334cb1003f.tar.gz freebsd-ports-gnome-c22d42c856a20a8422c8d45fc53926334cb1003f.tar.zst freebsd-ports-gnome-c22d42c856a20a8422c8d45fc53926334cb1003f.zip | |
- Update to 2.40
- Update *_DEPENDS for biology/p5-bioperl renaming
- Add NO_ARCH
- Sort PLIST
Changes: http://search.cpan.org/dist/Bio-Graphics/Changes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/p5-Bio-Graphics/Makefile | 16 | ||||
| -rw-r--r-- | biology/p5-Bio-Graphics/distinfo | 5 | ||||
| -rw-r--r-- | biology/p5-Bio-Graphics/pkg-plist | 11 |
3 files changed, 22 insertions, 10 deletions
diff --git a/biology/p5-Bio-Graphics/Makefile b/biology/p5-Bio-Graphics/Makefile index a6123ebb9237..3e0279beec25 100644 --- a/biology/p5-Bio-Graphics/Makefile +++ b/biology/p5-Bio-Graphics/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= Bio-Graphics -PORTVERSION= 2.39 +PORTVERSION= 2.40 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -14,13 +14,21 @@ LICENSE= ART10 GPLv1 LICENSE_COMB= dual BUILD_DEPENDS= p5-Bio-SCF>=1.01:biology/p5-Bio-SCF \ + p5-BioPerl>=1.6.0:biology/p5-BioPerl \ p5-GD>=2.30:graphics/p5-GD \ p5-GD-SVG>=0.32:graphics/p5-GD-SVG \ - p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive \ - p5-bioperl>=1.6.0:biology/p5-bioperl + p5-Statistics-Descriptive>=2.6:math/p5-Statistics-Descriptive RUN_DEPENDS:= ${BUILD_DEPENDS} +NO_ARCH= yes USES= perl5 USE_PERL5= modbuild -.include <bsd.port.mk> +.include <bsd.port.pre.mk> + +.if ${PERL_LEVEL} >= 502200 +BUILD_DEPENDS+= p5-CGI>=0:www/p5-CGI +RUN_DEPENDS+= p5-CGI>=0:www/p5-CGI +.endif + +.include <bsd.port.post.mk> diff --git a/biology/p5-Bio-Graphics/distinfo b/biology/p5-Bio-Graphics/distinfo index 7a2b3804f3d8..a86fd7c4489f 100644 --- a/biology/p5-Bio-Graphics/distinfo +++ b/biology/p5-Bio-Graphics/distinfo @@ -1,2 +1,3 @@ -SHA256 (Bio-Graphics-2.39.tar.gz) = 5602e56c469fba8be024d72bff7ec1502392d82ac0fde4d1399e02488d6bfd85 -SIZE (Bio-Graphics-2.39.tar.gz) = 1139511 +TIMESTAMP = 1482004816 +SHA256 (Bio-Graphics-2.40.tar.gz) = 7b20bcd9d87f3786b111ddeff2f60a51ec6712273f43547b73325dba3bebed32 +SIZE (Bio-Graphics-2.40.tar.gz) = 1105973 diff --git a/biology/p5-Bio-Graphics/pkg-plist b/biology/p5-Bio-Graphics/pkg-plist index d3d3927956ca..3a21c8a0e5c4 100644 --- a/biology/p5-Bio-Graphics/pkg-plist +++ b/biology/p5-Bio-Graphics/pkg-plist @@ -1,4 +1,6 @@ +bin/bam_coverage_windows.pl bin/contig_draw.pl +bin/coverage_to_topoview.pl bin/feature_draw.pl bin/frend.pl bin/glyph_help.pl @@ -88,6 +90,7 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/Glyph/three_letters.pm %%SITE_PERL%%/Bio/Graphics/Glyph/tic_tac_toe.pm %%SITE_PERL%%/Bio/Graphics/Glyph/toomany.pm +%%SITE_PERL%%/Bio/Graphics/Glyph/topoview.pm %%SITE_PERL%%/Bio/Graphics/Glyph/trace.pm %%SITE_PERL%%/Bio/Graphics/Glyph/track.pm %%SITE_PERL%%/Bio/Graphics/Glyph/transcript.pm @@ -112,6 +115,10 @@ bin/search_overview.pl %%SITE_PERL%%/Bio/Graphics/Util.pm %%SITE_PERL%%/Bio/Graphics/Wiggle.pm %%SITE_PERL%%/Bio/Graphics/Wiggle/Loader.pm +%%PERL5_MAN1%%/contig_draw.pl.1.gz +%%PERL5_MAN1%%/feature_draw.pl.1.gz +%%PERL5_MAN1%%/frend.pl.1.gz +%%PERL5_MAN1%%/search_overview.pl.1.gz %%PERL5_MAN3%%/Bio::Graphics.3.gz %%PERL5_MAN3%%/Bio::Graphics::ConfiguratorI.3.gz %%PERL5_MAN3%%/Bio::Graphics::DrawTransmembrane.3.gz @@ -212,7 +219,3 @@ bin/search_overview.pl %%PERL5_MAN3%%/Bio::Graphics::Util.3.gz %%PERL5_MAN3%%/Bio::Graphics::Wiggle.3.gz %%PERL5_MAN3%%/Bio::Graphics::Wiggle::Loader.3.gz -%%PERL5_MAN1%%/contig_draw.pl.1.gz -%%PERL5_MAN1%%/feature_draw.pl.1.gz -%%PERL5_MAN1%%/frend.pl.1.gz -%%PERL5_MAN1%%/search_overview.pl.1.gz |