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| author | wjv <wjv@FreeBSD.org> | 2002-03-27 22:42:56 +0800 |
|---|---|---|
| committer | wjv <wjv@FreeBSD.org> | 2002-03-27 22:42:56 +0800 |
| commit | 39d668c0346e97530288a9e6f9c4fb0d7c9c51a3 (patch) | |
| tree | 21b1cdf4e1acc6bc8f4e54da5a09876236a16568 /biology | |
| parent | 1756efabd1de0b9ab1edc671456cd1d4e4ec7bfa (diff) | |
| download | freebsd-ports-gnome-39d668c0346e97530288a9e6f9c4fb0d7c9c51a3.tar.gz freebsd-ports-gnome-39d668c0346e97530288a9e6f9c4fb0d7c9c51a3.tar.zst freebsd-ports-gnome-39d668c0346e97530288a9e6f9c4fb0d7c9c51a3.zip | |
Add crimap 2.4, a tool for the creation of multilocus linkage maps.
PR: 35198
Submitted by: Tony Maher <tonym@biolateral.com.au>
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/crimap/Makefile | 40 | ||||
| -rw-r--r-- | biology/crimap/distinfo | 1 | ||||
| -rw-r--r-- | biology/crimap/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/crimap/pkg-descr | 10 | ||||
| -rw-r--r-- | biology/crimap/pkg-plist | 6 |
6 files changed, 59 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 1de3d9e94a34..2551f00d5a13 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -7,6 +7,7 @@ SUBDIR += chemeq SUBDIR += clustalw SUBDIR += coalesce + SUBDIR += crimap SUBDIR += deft SUBDIR += dna-qc SUBDIR += emboss diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile new file mode 100644 index 000000000000..e5ecc9ad9857 --- /dev/null +++ b/biology/crimap/Makefile @@ -0,0 +1,40 @@ +# New ports collection makefile for: crimap +# Date created: 4 December 2001 +# Whom: Tony Maher <tonym@biolateral.com.au> +# +# $FreeBSD$ +# + +PORTNAME= crimap +PORTVERSION= 2.4 +CATEGORIES= biology +MASTER_SITES= http://compgen.rutgers.edu/multimap/crimap/ +DISTNAME= ${PORTNAME}.source +EXTRACT_SUFX= .tar.Z + +MAINTAINER= tonym@biolateral.com.au + +NO_WRKSUBDIR= true + +PROGRAMS= crimap +EXAMPLES= chr7a.gen demo.dat + +do-build: + cd ${WRKSRC}; \ + cc -O -o crimap *.c -lm + +do-install: +.for file in ${PROGRAMS} + ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin +.endfor +.if !defined(NOPORTDOCS) + @${MKDIR} ${EXAMPLESDIR} + @${MKDIR} ${DOCSDIR} + ${CAT} ${WRKSRC}/progdoc_v2.4 | tbl | eqn -Tlatin1 | nroff -ms -t \ + > ${DOCSDIR}/progdoc_v2.4 +.for file in ${EXAMPLES} + ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR} +.endfor +.endif + +.include <bsd.port.mk> diff --git a/biology/crimap/distinfo b/biology/crimap/distinfo new file mode 100644 index 000000000000..8738c53c87e8 --- /dev/null +++ b/biology/crimap/distinfo @@ -0,0 +1 @@ +MD5 (crimap.source.tar.Z) = bd5b445901feb9c1aa3c2926a3dc7353 diff --git a/biology/crimap/pkg-comment b/biology/crimap/pkg-comment new file mode 100644 index 000000000000..3ce04b017c81 --- /dev/null +++ b/biology/crimap/pkg-comment @@ -0,0 +1 @@ +Creation of multilocus linkage maps diff --git a/biology/crimap/pkg-descr b/biology/crimap/pkg-descr new file mode 100644 index 000000000000..8af40b581095 --- /dev/null +++ b/biology/crimap/pkg-descr @@ -0,0 +1,10 @@ +"The main purpose of CRI-MAP is to allow rapid, largely automated +construction of multilocus linkage maps (and facilitate the attendant +tasks of assessing support relative to alternative locus orders, +generating LOD tables, and detecting data errors)." +- from the documentation + +WWW: http://compgen.rutgers.edu/multimap/crimap/ + +-- +Tony Maher <tonym@biolateral.com.au> diff --git a/biology/crimap/pkg-plist b/biology/crimap/pkg-plist new file mode 100644 index 000000000000..cd57f6bcc5ff --- /dev/null +++ b/biology/crimap/pkg-plist @@ -0,0 +1,6 @@ +bin/crimap +%%PORTDOCS%%share/doc/crimap/progdoc_v2.4 +%%PORTDOCS%%share/examples/crimap/chr7a.gen +%%PORTDOCS%%share/examples/crimap/demo.dat +%%PORTDOCS%%@dirrm share/doc/crimap +%%PORTDOCS%%@dirrm share/examples/crimap |