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authoraaron <aaron@FreeBSD.org>2006-12-28 02:58:26 +0800
committeraaron <aaron@FreeBSD.org>2006-12-28 02:58:26 +0800
commit964bc2e70e1012f1d216d02803746d7ecb8e4b7c (patch)
treea377c90b0d66195d391700ac259e8cd75030b430 /biology
parent553384bfd06890811e05123d98d60ecce6eef5e1 (diff)
downloadfreebsd-ports-gnome-964bc2e70e1012f1d216d02803746d7ecb8e4b7c.tar.gz
freebsd-ports-gnome-964bc2e70e1012f1d216d02803746d7ecb8e4b7c.tar.zst
freebsd-ports-gnome-964bc2e70e1012f1d216d02803746d7ecb8e4b7c.zip
Update to v0.15
Diffstat (limited to 'biology')
-rw-r--r--biology/p5-Bio-Phylo/Makefile9
-rw-r--r--biology/p5-Bio-Phylo/distinfo6
-rw-r--r--biology/p5-Bio-Phylo/pkg-plist65
3 files changed, 40 insertions, 40 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 5c72850da4fd..96d4d20471e8 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -6,7 +6,7 @@
#
PORTNAME= Bio-Phylo
-PORTVERSION= 0.14
+PORTVERSION= 0.15
CATEGORIES= biology perl5
MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
MASTER_SITE_SUBDIR= Bio
@@ -15,13 +15,14 @@ PKGNAMEPREFIX= p5-
MAINTAINER= aaron@FreeBSD.org
COMMENT= Phylogenetic analysis using perl
-RUN_DEPENDS= p5-Exception-Class>=1.23:${PORTSDIR}/devel/p5-Exception-Class \
+BUILD_DEPENDS= p5-Exception-Class>1.22:${PORTSDIR}/devel/p5-Exception-Class \
p5-Math-Random>=0.67:${PORTSDIR}/math/p5-Math-Random \
p5-IO-String>=1.05:${PORTSDIR}/devel/p5-IO-String \
+ p5-bioperl>=0:${PORTSDIR}/biology/p5-bioperl \
p5-SVG>=1.07:${PORTSDIR}/textproc/p5-SVG
+RUN_DEPENDS= ${BUILD_DEPENDS}
MAN1= dndtag.pl.1
-
MAN3= Bio::Phylo.3 \
Bio::Phylo::ConfigData.3 \
Bio::Phylo::Forest.3 \
@@ -48,7 +49,7 @@ MAN3= Bio::Phylo.3 \
Bio::Phylo::Unparsers::Pagel.3 \
Bio::Phylo::Util::CONSTANT.3 \
Bio::Phylo::Util::Exceptions.3 \
- Bio::Phylo::Util::IDPool.3
+ Bio::Phylo::Util::IDPool.3 \
PERL_MODBUILD= yes
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index 94a1f401cb03..93df909c161d 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,3 +1,3 @@
-MD5 (Bio-Phylo-0.14.tar.gz) = a3e8b1af9c5d15128b4a6a9320d89a7f
-SHA256 (Bio-Phylo-0.14.tar.gz) = d35f125ea23a70ceedffef567b6f7838bea8ab62704d09f0704c14138855c99f
-SIZE (Bio-Phylo-0.14.tar.gz) = 106299
+MD5 (Bio-Phylo-0.15.tar.gz) = 73783c01218717e2c44016ad52ee73bb
+SHA256 (Bio-Phylo-0.15.tar.gz) = fcec20c17f1909df20d22f87f655e62fa5cf93c92fa64460f1937e77a39bc067
+SIZE (Bio-Phylo-0.15.tar.gz) = 104576
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index cb9587663b78..9f79fab2a457 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -1,38 +1,37 @@
-@comment $FreeBSD$
-bin/postmb.pl
-bin/droptip.pl
-bin/dndtag.pl
-bin/dnd2svg.pl
-bin/bremer.pl
-bin/age2bl.pl
bin/LRmb.pl
-%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
-%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
-%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
-%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
-%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
-%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
-%%SITE_PERL%%/Bio/Phylo/Taxa.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices.pm
-%%SITE_PERL%%/Bio/Phylo/Manual.pod
-%%SITE_PERL%%/Bio/Phylo/Listable.pm
-%%SITE_PERL%%/Bio/Phylo/IO.pm
-%%SITE_PERL%%/Bio/Phylo/Generator.pm
-%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
-%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
-%%SITE_PERL%%/Bio/Phylo/Forest.pm
-%%SITE_PERL%%/Bio/Phylo/ConfigData.pm
+bin/age2bl.pl
+bin/bremer.pl
+bin/dnd2svg.pl
+bin/dndtag.pl
+bin/droptip.pl
+bin/postmb.pl
%%SITE_PERL%%/Bio/Phylo.pm
+%%SITE_PERL%%/Bio/Phylo/ConfigData.pm
+%%SITE_PERL%%/Bio/Phylo/Forest.pm
+%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
+%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
+%%SITE_PERL%%/Bio/Phylo/Generator.pm
+%%SITE_PERL%%/Bio/Phylo/IO.pm
+%%SITE_PERL%%/Bio/Phylo/Listable.pm
+%%SITE_PERL%%/Bio/Phylo/Manual.pod
+%%SITE_PERL%%/Bio/Phylo/Matrices.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
+%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
+%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
+%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer