diff options
author | ijliao <ijliao@FreeBSD.org> | 2003-01-02 11:57:58 +0800 |
---|---|---|
committer | ijliao <ijliao@FreeBSD.org> | 2003-01-02 11:57:58 +0800 |
commit | 312af7e6b077e8e68d3e93b0d85d0e788f239dfe (patch) | |
tree | 406a9c6084c1f8d394fe3c40169af8093bbcbfbd /biology | |
parent | 8f24583560917cd5d6e677445ac86724b107d4b4 (diff) | |
download | freebsd-ports-gnome-312af7e6b077e8e68d3e93b0d85d0e788f239dfe.tar.gz freebsd-ports-gnome-312af7e6b077e8e68d3e93b0d85d0e788f239dfe.tar.zst freebsd-ports-gnome-312af7e6b077e8e68d3e93b0d85d0e788f239dfe.zip |
upgrade to 3.7
PR: 44957
Submitted by: maintainer
Diffstat (limited to 'biology')
-rw-r--r-- | biology/spdbv/Makefile | 24 | ||||
-rw-r--r-- | biology/spdbv/distinfo | 2 | ||||
-rw-r--r-- | biology/spdbv/files/patch-aa | 28 | ||||
-rw-r--r-- | biology/spdbv/files/patch-ab | 15 | ||||
-rw-r--r-- | biology/spdbv/pkg-plist | 379 |
5 files changed, 255 insertions, 193 deletions
diff --git a/biology/spdbv/Makefile b/biology/spdbv/Makefile index 003a5ce0d540..e7926ec15b7d 100644 --- a/biology/spdbv/Makefile +++ b/biology/spdbv/Makefile @@ -6,27 +6,29 @@ # PORTNAME= spdbv -PORTVERSION= 37b2 +PORTVERSION= 3.7 CATEGORIES= biology MASTER_SITES= http://au.expasy.org/spdbv/program/ \ - http://www.expasy.org/spdbv/program/ \ - http://tw.expasy.org/spdbv/program/ \ - http://cn.expasy.org/spdbv/program/ \ - http://ca.expasy.org/spdbv/program/ \ - http://kr.expasy.org/spdbv/program/ \ - http://inn-prot.weizmann.ac.il/spdbv/program/\ - http://www.usm.maine.edu/spdbv/program/ \ - http://www.genebee.msu.ru/spdbv/program/ -DISTNAME= ${PORTNAME}${PORTVERSION}_IRIX_Linux + http://www.expasy.org/spdbv/program/ \ + http://tw.expasy.org/spdbv/program/ \ + http://cn.expasy.org/spdbv/program/ \ + http://ca.expasy.org/spdbv/program/ \ + http://kr.expasy.org/spdbv/program/ \ + http://inn-prot.weizmann.ac.il/spdbv/program/\ + http://www.usm.maine.edu/spdbv/program/ \ + http://www.genebee.msu.ru/spdbv/program/ +DISTNAME= ${PORTNAME}${PORTVERSION:C/\.//}-Linux MAINTAINER= chuynh@biolateral.com.au -RUN_DEPENDS= ${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 +RUN_DEPENDS= ${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 \ + ${LINUXBASE}${X11BASE}/lib/libXm.so.2:${PORTSDIR}/x11-toolkits/linux-openmotif SPDBV= SPDBV WRKSRC= ${WRKDIR}/SPDBV_DISTRIBUTION +USE_LINUX= yes NO_BUILD= yes NO_CDROM= "Must be downloaded direct from Expasy via www interface" diff --git a/biology/spdbv/distinfo b/biology/spdbv/distinfo index 3b3ba8302d96..1b6a3b961750 100644 --- a/biology/spdbv/distinfo +++ b/biology/spdbv/distinfo @@ -1 +1 @@ -MD5 (spdbv37b2_IRIX_Linux.tar.gz) = 28513cb85c8e09493d8be535e76076a3 +MD5 (spdbv37-Linux.tar.gz) = 502394bb3d12fcaad89e80cc3398b0da diff --git a/biology/spdbv/files/patch-aa b/biology/spdbv/files/patch-aa index 125c1dd245b8..13565d05159a 100644 --- a/biology/spdbv/files/patch-aa +++ b/biology/spdbv/files/patch-aa @@ -1,7 +1,7 @@ ---- install.sh.orig Mon Dec 4 21:31:45 2000 -+++ install.sh Thu Dec 20 10:15:42 2001 +--- install.sh.orig Tue Nov 5 13:55:58 2002 ++++ install.sh Tue Nov 5 14:02:10 2002 @@ -7,10 +7,9 @@ - SPDBVNEEDOSbis="Linux" + SPDBVNEEDOS="Linux" SPDBVUSERDIR="$HOME" -SPDBVSHAREDIR="/usr/share" @@ -30,27 +30,27 @@ - else - abort - fi -+ echo " " -+ echo "will reinstall" ++ echo " " ++ echo "will reinstall" fi mkdir $SPDBVDEST/$SPDBVDIR #2> /dev/null if [ ! -d $SPDBVDEST/$SPDBVDIR ]; then -@@ -64,11 +51,11 @@ - chmod ugo+rx $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh +@@ -63,11 +50,11 @@ + chmod ugo+rx $SPDBVDEST/$SPDBVDIR/bin/spdbv - #try to make link from /usr/bin/spdbv to ./spdbv.sh + #try to make link from /usr/bin/spdbv to ./spdbv - if [ ! -w /usr/bin/ ]; then + if [ ! -w ${SPDBVDEST}/bin/ ]; then echo " " -- echo "Can't make a link from /usr/bin/spdbv to spdbv.sh" -+ echo "Can't make a link from ${SPDBVDEST}/bin/spdbv to spdbv.sh" +- echo "Can't make a link from /usr/bin/spdbv to $SPDBVDEST/$SPDBVDIR/bin/spdbv" ++ echo "Can't make a link from ${SPDBVDEST}/bin/spdbv to $SPDBVDEST/$SPDBVDIR/bin/spdbv" else -- ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh /usr/bin/spdbv -+ ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh ${SPDBVDEST}/bin/spdbv +- ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv /usr/bin/spdbv ++ ln -sf $SPDBVDEST/$SPDBVDIR/bin/spdbv ${SPDBVDEST}/bin/spdbv fi } -@@ -82,65 +69,18 @@ +@@ -81,65 +68,18 @@ echo " Installation script for Release $SPDBVVERSION ($SPDBVNEEDOS)" echo " " echo " " @@ -99,7 +99,7 @@ echo " Installation script for Release $SPDBVVERSION ($SPDBVNEEDOS)" echo " " echo "Installation completed." -- echo "Start your copy of SPDBV with the script $SPDBVDEST/$SPDBVDIR/bin/spdbv.sh" +- echo "Start your copy of SPDBV with the script $SPDBVDEST/$SPDBVDIR/bin/spdbv" echo "" echo "ENJOY SPDBV!" exit diff --git a/biology/spdbv/files/patch-ab b/biology/spdbv/files/patch-ab index 48bb1215f83d..04dd22ad6731 100644 --- a/biology/spdbv/files/patch-ab +++ b/biology/spdbv/files/patch-ab @@ -1,20 +1,11 @@ ---- SPDBV/bin/spdbv-orig.sh.orig Thu Dec 20 10:11:25 2001 -+++ SPDBV/bin/spdbv-orig.sh Thu Dec 20 10:26:00 2001 +--- SPDBV/bin/spdbv-orig.sh.orig Tue Nov 5 14:03:36 2002 ++++ SPDBV/bin/spdbv-orig.sh Tue Nov 5 14:08:19 2002 @@ -1,6 +1,8 @@ ARCH=`uname -s` if [ $ARCH = IRIX64 ]; then ARCH=IRIX +elif [ $ARCH = FreeBSD ]; then -+ ARCH=Linux ++ ARCH=Linux fi SPDBV_TEMP=$HOME/SPDBV/temp SPDBV_DOWNLOAD=$HOME/SPDBV/download -@@ -38,7 +40,5 @@ - #xrdb -override $SPDBV_BASE/app-defaults/Spdbv - - #start the SPDBV, reroute stderr to nirvana --{ -- $SPDBV_BASE/bin/$SPDBV_RELEASE.$ARCH $* --} 2> /dev/null -+$SPDBV_BASE/bin/$SPDBV_RELEASE.$ARCH $* - #done. diff --git a/biology/spdbv/pkg-plist b/biology/spdbv/pkg-plist index 80d6959e803e..8cc0e4f9b570 100644 --- a/biology/spdbv/pkg-plist +++ b/biology/spdbv/pkg-plist @@ -1,185 +1,254 @@ -SPDBV/_stuff_/AlignWnd.hlp -SPDBV/_stuff_/CavitInf.hlp -SPDBV/_stuff_/CtrlPanl.hlp -SPDBV/_stuff_/DispWnd.hlp -SPDBV/_stuff_/LayerInf.hlp -SPDBV/_stuff_/RamaWnd.hlp -SPDBV/_stuff_/Rotolib.aa -SPDBV/_stuff_/Rotolib1.aa -SPDBV/_stuff_/Rotolib2.aa -SPDBV/_stuff_/SM_req.htm -SPDBV/_stuff_/SM_templ.htm +SPDBV/bin/ppov10 +SPDBV/bin/spdbv.Linux +SPDBV/bin/spdbv +SPDBV/readme.txt +SPDBV/news.txt SPDBV/_stuff_/XtalInf.hlp -SPDBV/_stuff_/_loopDB_ -SPDBV/_stuff_/crystmov.txt -SPDBV/_stuff_/crystsym.txt -SPDBV/_stuff_/default.PP -SPDBV/_stuff_/grmparam/angles.prm -SPDBV/_stuff_/grmparam/bonds.prm -SPDBV/_stuff_/grmparam/improper.prm +SPDBV/_stuff_/CavitInf.hlp +SPDBV/_stuff_/grmparam/CVS/Tag +SPDBV/_stuff_/grmparam/CVS/Root +SPDBV/_stuff_/grmparam/CVS/Entries +SPDBV/_stuff_/grmparam/CVS/Repository +SPDBV/_stuff_/grmparam/torsion.prm SPDBV/_stuff_/grmparam/nbondsel.prm +SPDBV/_stuff_/grmparam/bonds.prm SPDBV/_stuff_/grmparam/nonbonds.prm -SPDBV/_stuff_/grmparam/torsion.prm -SPDBV/_stuff_/grmtopol/ALA.tpl -SPDBV/_stuff_/grmtopol/ARG.tpl -SPDBV/_stuff_/grmtopol/ARGN.tpl -SPDBV/_stuff_/grmtopol/ASN.tpl +SPDBV/_stuff_/grmparam/improper.prm +SPDBV/_stuff_/grmparam/angles.prm +SPDBV/_stuff_/gifs/getacro.gif +SPDBV/_stuff_/gifs/tips.gif +SPDBV/_stuff_/gifs/userguide.gif +SPDBV/_stuff_/gifs/feedback.gif +SPDBV/_stuff_/gifs/artgallery.gif +SPDBV/_stuff_/gifs/tutorial.gif +SPDBV/_stuff_/gifs/download.gif +SPDBV/_stuff_/gifs/references.gif +SPDBV/_stuff_/gifs/mirror.gif +SPDBV/_stuff_/gifs/index.gif +SPDBV/_stuff_/gifs/logo.gif +SPDBV/_stuff_/text/stereo.htm +SPDBV/_stuff_/text/loop.htm +SPDBV/_stuff_/text/fabp.htm +SPDBV/_stuff_/text/modeling.htm +SPDBV/_stuff_/text/pattern.htm +SPDBV/_stuff_/text/rama.htm +SPDBV/_stuff_/text/faq.htm +SPDBV/_stuff_/text/torsion.htm +SPDBV/_stuff_/text/templ_1.html +SPDBV/_stuff_/text/povscene.htm +SPDBV/_stuff_/text/build.htm +SPDBV/_stuff_/text/gromo_pl.htm +SPDBV/_stuff_/text/activsit.htm +SPDBV/_stuff_/text/tips.htm +SPDBV/_stuff_/text/refs.htm +SPDBV/_stuff_/text/disclaim.htm +SPDBV/_stuff_/text/render.htm +SPDBV/_stuff_/text/tools.htm +SPDBV/_stuff_/text/epot.htm +SPDBV/_stuff_/text/prefs.htm +SPDBV/_stuff_/text/color.htm +SPDBV/_stuff_/text/gallery_local.htm +SPDBV/_stuff_/text/files.htm +SPDBV/_stuff_/text/superpos.htm +SPDBV/_stuff_/text/feedback.htm +SPDBV/_stuff_/text/cshrc.htm +SPDBV/_stuff_/text/rendcomp.htm +SPDBV/_stuff_/text/pov.htm +SPDBV/_stuff_/text/display.htm +SPDBV/_stuff_/text/hew.htm +SPDBV/_stuff_/text/gallery.htm +SPDBV/_stuff_/text/energy.htm +SPDBV/_stuff_/text/disclaim_local.htm +SPDBV/_stuff_/text/mutation.htm +SPDBV/_stuff_/text/ribbon.htm +SPDBV/_stuff_/text/transfo.htm +SPDBV/_stuff_/text/moving.htm +SPDBV/_stuff_/text/select.htm +SPDBV/_stuff_/text/edmtut.htm +SPDBV/_stuff_/text/surface.htm +SPDBV/_stuff_/text/gromotut.htm +SPDBV/_stuff_/text/ctrlpanl.htm +SPDBV/_stuff_/text/tutorial.htm +SPDBV/_stuff_/text/distort.htm +SPDBV/_stuff_/text/selmenu.htm +SPDBV/_stuff_/text/toolmenu.htm +SPDBV/_stuff_/text/xsymtut.htm +SPDBV/_stuff_/text/server.htm +SPDBV/_stuff_/text/mirror.htm +SPDBV/_stuff_/text/rotolib.htm +SPDBV/_stuff_/text/edm.htm +SPDBV/_stuff_/text/main.htm +SPDBV/_stuff_/text/index.htm +SPDBV/_stuff_/text/phipsi.htm +SPDBV/_stuff_/manual.htm +SPDBV/_stuff_/crystsym.txt +SPDBV/_stuff_/SM_templ.htm +SPDBV/_stuff_/grmtopol/CVS/Tag +SPDBV/_stuff_/grmtopol/CVS/Root +SPDBV/_stuff_/grmtopol/CVS/Entries +SPDBV/_stuff_/grmtopol/CVS/Repository +SPDBV/_stuff_/grmtopol/ATP.tpl SPDBV/_stuff_/grmtopol/ASP.tpl -SPDBV/_stuff_/grmtopol/ASPH.tpl -SPDBV/_stuff_/grmtopol/CA2.tpl -SPDBV/_stuff_/grmtopol/CL.tpl -SPDBV/_stuff_/grmtopol/CU.tpl -SPDBV/_stuff_/grmtopol/CU1.tpl -SPDBV/_stuff_/grmtopol/CYS.tpl -SPDBV/_stuff_/grmtopol/CYS1.tpl -SPDBV/_stuff_/grmtopol/CYS2.tpl -SPDBV/_stuff_/grmtopol/CYSH.tpl -SPDBV/_stuff_/grmtopol/FE.tpl -SPDBV/_stuff_/grmtopol/GLN.tpl -SPDBV/_stuff_/grmtopol/GLU.tpl -SPDBV/_stuff_/grmtopol/GLUH.tpl -SPDBV/_stuff_/grmtopol/GLY.tpl -SPDBV/_stuff_/grmtopol/H2O.tpl 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