diff options
| author | garga <garga@FreeBSD.org> | 2006-03-15 18:24:57 +0800 |
|---|---|---|
| committer | garga <garga@FreeBSD.org> | 2006-03-15 18:24:57 +0800 |
| commit | 4d0300bd3a64bcf791b3dca2be0c9827c9b5fca0 (patch) | |
| tree | 421ec855d4e61b91868e95b6a0bb5273ecd04e98 /biology | |
| parent | b471445f6ba2bd6bf22f8bd83022e478adb82449 (diff) | |
| download | freebsd-ports-gnome-4d0300bd3a64bcf791b3dca2be0c9827c9b5fca0.tar.gz freebsd-ports-gnome-4d0300bd3a64bcf791b3dca2be0c9827c9b5fca0.tar.zst freebsd-ports-gnome-4d0300bd3a64bcf791b3dca2be0c9827c9b5fca0.zip | |
Add belvu 2.29, a viewer for multiple sequence alignments.
PR: ports/93056
Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/belvu/Makefile | 38 | ||||
| -rw-r--r-- | biology/belvu/distinfo | 3 | ||||
| -rw-r--r-- | biology/belvu/pkg-descr | 12 |
4 files changed, 54 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index fd9dcda8d631..a16c682cf739 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -8,6 +8,7 @@ SUBDIR += artemis SUBDIR += avida SUBDIR += babel + SUBDIR += belvu SUBDIR += biojava SUBDIR += blast SUBDIR += clustalw diff --git a/biology/belvu/Makefile b/biology/belvu/Makefile new file mode 100644 index 000000000000..bb24d2f600af --- /dev/null +++ b/biology/belvu/Makefile @@ -0,0 +1,38 @@ +# ex:ts=8 +# New ports collection makefile for: belvu +# Date created: 11 Jan 2006 +# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar> +# +# $FreeBSD$ +# + +PORTNAME= belvu +PORTVERSION= 2.29 +CATEGORIES= biology +MASTER_SITES= ftp://ftp.cgb.ki.se/pub/prog/belvu/ +DISTNAME= ${PORTNAME}.LIN_${PORTVERSION} +EXTRACT_SUFX= # +EXTRACT_ONLY= # + +MAINTAINER= fernan@iib.unsam.edu.ar +COMMENT= A viewer for multiple sequence alignments + +USE_LINUX= yes + +NO_BUILD= yes +PLIST_FILES= bin/${PORTNAME} bin/${DISTNAME} + +.include <bsd.port.pre.mk> + +.if ${ARCH} != "i386" +IGNORE= there are also executables for Alpha and Sparc \ + but they are for OSF and Solaris ... do they \ + run on FreeBSD-Sparc and FreeBSD-alpha? +.endif + +do-install: + ${BRANDELF} -t Linux ${DISTDIR}/${DISTNAME} + ${INSTALL_PROGRAM} ${DISTDIR}/${DISTNAME} ${PREFIX}/bin + ( cd ${PREFIX}/bin && ${LN} -s ${DISTNAME} ${PORTNAME} ) + +.include <bsd.port.post.mk> diff --git a/biology/belvu/distinfo b/biology/belvu/distinfo new file mode 100644 index 000000000000..3170fd60e82c --- /dev/null +++ b/biology/belvu/distinfo @@ -0,0 +1,3 @@ +MD5 (belvu.LIN_2.29) = 68e59a37a6a632f24221b96ea65bf006 +SHA256 (belvu.LIN_2.29) = 45a7da0eebc23a9352241cf1b078c7f74bc938284dc2308935fcaff78e8b1112 +SIZE (belvu.LIN_2.29) = 6181981 diff --git a/biology/belvu/pkg-descr b/biology/belvu/pkg-descr new file mode 100644 index 000000000000..9f3e292c7108 --- /dev/null +++ b/biology/belvu/pkg-descr @@ -0,0 +1,12 @@ +Belvu is an X-windows viewer for multiple sequence alignments. One of the main +advantages of Belvu is that it has an extensive set of modes to color the +residues. There are several ways to color them by conservation and by residue +type (user-configurable). Other useful features are fetching of the Swissprot +(or PIR) entries by double clicking and easy tracking of the position in the +alignment. + +Belvu further supports some simple editing commands for rows and columns, but +is not intended as a full editor. For actually editing the alignment, use your +favorite alignment editor or Emacs. + +WWW: http://www.cgb.ki.se/cgb/groups/sonnhammer/Belvu.html |