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| author | itetcu <itetcu@FreeBSD.org> | 2006-06-06 20:05:19 +0800 |
|---|---|---|
| committer | itetcu <itetcu@FreeBSD.org> | 2006-06-06 20:05:19 +0800 |
| commit | f389ee9c351afae4b17c419a7602424883751cd6 (patch) | |
| tree | 07eb5d81e35263c712ed021f04cfc6025bcd31d4 /biology | |
| parent | a95385393b8ba4d73608b7b7d8d1d9ef0b2e0b21 (diff) | |
| download | freebsd-ports-gnome-f389ee9c351afae4b17c419a7602424883751cd6.tar.gz freebsd-ports-gnome-f389ee9c351afae4b17c419a7602424883751cd6.tar.zst freebsd-ports-gnome-f389ee9c351afae4b17c419a7602424883751cd6.zip | |
Update biology/ncbi-toolkit to the latest release.
Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml
Major changes include:
blastall now uses the new engine by default, resulting
in significant performance improvements and enabling
query concatenation for all program types.
PR: ports/98570
Submitted by: maintainer
Approved by: lawrance (mentor, implict)
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/ncbi-toolkit/Makefile | 2 | ||||
| -rw-r--r-- | biology/ncbi-toolkit/distinfo | 6 | ||||
| -rw-r--r-- | biology/ncbi-toolkit/pkg-plist | 8 |
3 files changed, 11 insertions, 5 deletions
diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile index b1d3183c1524..c512edf7c9d8 100644 --- a/biology/ncbi-toolkit/Makefile +++ b/biology/ncbi-toolkit/Makefile @@ -7,7 +7,7 @@ # PORTNAME= ncbi-toolkit -PORTVERSION= 2005.12.06 +PORTVERSION= 2006.05.07 # containing BLAST v2.2.14 CATEGORIES= biology MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g}/ DISTNAME= ncbi diff --git a/biology/ncbi-toolkit/distinfo b/biology/ncbi-toolkit/distinfo index 82242ab79d44..5227b4e051fd 100644 --- a/biology/ncbi-toolkit/distinfo +++ b/biology/ncbi-toolkit/distinfo @@ -1,3 +1,3 @@ -MD5 (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 50a83a509b67fd8f317b0da42703de1d -SHA256 (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 0b409557d6601b8703328cd1ae997985677416e9ad9375e57b298113ecaaeeda -SIZE (ncbi-toolkit-2005.12.06/ncbi.tar.gz) = 14693833 +MD5 (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = 1c00462385fbf382c99ff65f34c0d09a +SHA256 (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = b3cac971d552b2ad86ee7d82e77e6a425b98b33a7b6f1c77062aff133e34d129 +SIZE (ncbi-toolkit-2006.05.07/ncbi.tar.gz) = 15396356 diff --git a/biology/ncbi-toolkit/pkg-plist b/biology/ncbi-toolkit/pkg-plist index 47e298485a59..cc64a829fb5c 100644 --- a/biology/ncbi-toolkit/pkg-plist +++ b/biology/ncbi-toolkit/pkg-plist @@ -58,7 +58,9 @@ include/ncbi/connect/ncbi_heapmgr.h include/ncbi/connect/ncbi_host_info.h include/ncbi/connect/ncbi_host_infop.h include/ncbi/connect/ncbi_http_connector.h +include/ncbi/connect/ncbi_lb.h include/ncbi/connect/ncbi_lbsmd.h +include/ncbi/connect/ncbi_local.h include/ncbi/connect/ncbi_memory_connector.h include/ncbi/connect/ncbi_priv.h include/ncbi/connect/ncbi_sendmail.h @@ -438,6 +440,7 @@ include/ncbi/seqsplit.h include/ncbi/seqsub.h include/ncbi/sequtil.h include/ncbi/shim3d.h +include/ncbi/showalignwrap.h include/ncbi/simple.h include/ncbi/simutil.h include/ncbi/smith_waterman.h @@ -485,6 +488,7 @@ include/ncbi/udvdef.h include/ncbi/udviewer.h include/ncbi/udvseq.h include/ncbi/undefwin.h +include/ncbi/unified_pvalues.h include/ncbi/urkbias.h include/ncbi/urkcnsrt.h include/ncbi/urkdust.h @@ -619,7 +623,6 @@ lib/ncbi/libvibrant.a %%PORTDOCS%%%%DOCSDIR%%/man/Nentrez.1 %%PORTDOCS%%%%DOCSDIR%%/man/Psequin.1 %%PORTDOCS%%%%DOCSDIR%%/man/asn2asn.1 - %%PORTDOCS%%%%DOCSDIR%%/man/asn2gb.1 %%PORTDOCS%%%%DOCSDIR%%/man/asn2xml.1 %%PORTDOCS%%%%DOCSDIR%%/man/asndhuff.1 @@ -699,6 +702,9 @@ lib/ncbi/libvibrant.a %%PORTDOCS%%%%DOCSDIR%%/seq_install/win-netscape.css %%PORTDOCS%%%%DOCSDIR%%/sequin.htm %%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt +%%DATADIR%%/16Score.nhr +%%DATADIR%%/16Score.nin +%%DATADIR%%/16Score.nsq %%DATADIR%%/BLOSUM45 %%DATADIR%%/BLOSUM62 %%DATADIR%%/BLOSUM80 |