- Stage support [1]

- Pet portlint [1]
- Add LICENSE
- Convert to PYDISTUTILS_AUTOPLIST

PR:		188819 [1]
Submitted by:	Bartek Rutkowski <ports@robakdesign.com> [1]

3 files changed, 5 insertions, 1064 deletions

diff --git a/biology/pycogent/Makefile b/biology/pycogent/Makefile
index 45761b7e25d0..7f6f41e76b59 100644
--- a/biology/pycogent/Makefile
+++ b/biology/pycogent/Makefile
@@ -10,7 +10,9 @@ DISTNAME=	PyCogent-${PORTVERSION}
 EXTRACT_SUFX=	.tgz
 
 MAINTAINER=	wen@FreeBSD.org
-COMMENT=	A toolkit for statistical analysis of biological sequences
+COMMENT=	Toolkit for statistical analysis of biological sequences
+
+LICENSE=	GPLv2
 
 BUILD_DEPENDS=	${PYNUMPY} \
 		${LOCALBASE}/bin/cython:${PORTSDIR}/lang/cython \
@@ -21,6 +23,6 @@ RUN_DEPENDS:=	${BUILD_DEPENDS}
 USE_PYTHON=		yes
 USE_PYDISTUTILS=	yes
 PYDISTUTILS_PKGNAME=	cogent
+PYDISTUTILS_AUTOPLIST=	yes
 
-NO_STAGE=	yes
 .include <bsd.port.mk>
diff --git a/biology/pycogent/pkg-descr b/biology/pycogent/pkg-descr
index 600342b93248..029ffbbf3f53 100644
--- a/biology/pycogent/pkg-descr
+++ b/biology/pycogent/pkg-descr
@@ -6,4 +6,4 @@ graphics. It is distinguished by many unique built-in capabilities (such as
 true codon alignment) and the frequent addition of entirely new methods for
 the analysis of genomic data.
 
-WWW:	http://pycogent.sourceforge.net/
+WWW: http://pycogent.sourceforge.net/
diff --git a/biology/pycogent/pkg-plist b/biology/pycogent/pkg-plist
deleted file mode 100644
index 085ee15f5ef0..000000000000
--- a/biology/pycogent/pkg-plist
+++ /dev/null
@@ -1,1061 +0,0 @@
-%%PYTHON_SITELIBDIR%%/cogent/__init__.py
-%%PYTHON_SITELIBDIR%%/cogent/__init__.pyc
-%%PYTHON_SITELIBDIR%%/cogent/__init__.pyo
-%%PYTHON_SITELIBDIR%%/cogent/align/__init__.py
-%%PYTHON_SITELIBDIR%%/cogent/align/__init__.pyc
-%%PYTHON_SITELIBDIR%%/cogent/align/__init__.pyo
-%%PYTHON_SITELIBDIR%%/cogent/align/_compare.so
-%%PYTHON_SITELIBDIR%%/cogent/align/_pairwise_pogs.so
-%%PYTHON_SITELIBDIR%%/cogent/align/_pairwise_seqs.so
-%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.py
-%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyc
-%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyo
-%%PYTHON_SITELIBDIR%%/cogent/align/align.py
-%%PYTHON_SITELIBDIR%%/cogent/align/align.pyc
-%%PYTHON_SITELIBDIR%%/cogent/align/align.pyo
-%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.py
-%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyc
-%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyo
-%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.py
-%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyc
-%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyo
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-%%PYTHON_SITELIBDIR%%/cogent/align/indel_positions.pyc
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-%%PYTHON_SITELIBDIR%%/cogent/align/pairwise.pyo
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-%%PYTHON_SITELIBDIR%%/cogent/align/progressive.pyo
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