Bump PORTREVISIONs for ports depending on the canonical version of GCC and

lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

16 files changed, 16 insertions, 11 deletions

diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index 260600584fde..991393a072d1 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=		bowtie
 PORTVERSION=		1.1.2
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONPREFIX=	v
 CATEGORIES=		biology
 
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index 7e3d5df96f56..5c348f176127 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	cd-hit
 PORTVERSION=	4.6.6
+PORTREVISION=	1
 DISTVERSIONPREFIX=	V
 CATEGORIES=	biology
 
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 6131e4c47f47..50dc846b8459 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	crux
 PORTVERSION=	1.2.0
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	biology python
 MASTER_SITES=	http://www.canonware.com/download/Crux/
 
diff --git a/biology/diamond/Makefile b/biology/diamond/Makefile
index 1e0b76dc2150..2c0bbcd975de 100644
--- a/biology/diamond/Makefile
+++ b/biology/diamond/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	diamond
 PORTVERSION=	0.8.36
+PORTREVISION=	1
 DISTVERSIONPREFIX=v
 CATEGORIES=	biology
 
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index d95457d0e6fb..1dcc0db615ba 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	FastTree
 PORTVERSION=	2.1.8
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 MASTER_SITES=	http://www.microbesonline.org/fasttree/
 EXTRACT_SUFX=	.c
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 15a372200011..5225aae87fbd 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	jellyfish
 PORTVERSION=	2.2.6
+PORTREVISION=	1
 DISTVERSIONPREFIX=	v
 CATEGORIES=	biology
 
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index e19e38db9ae6..23f472a3d7ea 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	molden
 PORTVERSION=	5.7
-PORTREVISION=	5
+PORTREVISION=	6
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 67a6592572db..a160df902f3c 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mopac
 PORTVERSION=	7.${MOPAC_SUBVERSION}
-PORTREVISION=	1
+PORTREVISION=	2
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index f28217cf56a5..d12f3154dc45 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	blast+
 PORTVERSION=	2.5.0
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \
 		http://acadix.biz/Ports/distfiles/
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index f0c613503a79..43c14f1ddf97 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	plink
 PORTVERSION=	1.07
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	biology science
 MASTER_SITES=	http://pngu.mgh.harvard.edu/~purcell/plink/dist/
 DISTNAME=	${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 7cd6f37adfa7..89cb93ec4c80 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	psi88
 PORTVERSION=	1.0
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	biology
 MASTER_SITES=	http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
 DISTNAME=	${PORTNAME}
diff --git a/biology/seqan-apps/Makefile b/biology/seqan-apps/Makefile
index 48d64279d654..0191a80d8a5a 100644
--- a/biology/seqan-apps/Makefile
+++ b/biology/seqan-apps/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	seqan-apps
 PORTVERSION=	2.2.0
 DISTVERSIONPREFIX=	seqan-v
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	biology
 
 MAINTAINER=	h2+fbsdports@fsfe.org
diff --git a/biology/seqtools/Makefile b/biology/seqtools/Makefile
index 558642255a6b..a242be63b953 100644
--- a/biology/seqtools/Makefile
+++ b/biology/seqtools/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	seqtools
 PORTVERSION=	4.44.1
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
 
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
index 819d51492b5e..c7f6966f8a47 100644
--- a/biology/ssaha/Makefile
+++ b/biology/ssaha/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	ssaha
 PORTVERSION=	3.1c
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
 DISTNAME=	${PORTNAME}_v${PORTVERSION:S/.//}
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index 8c02abaad776..d7a37f4b9c6e 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	t_coffee
 PORTVERSION=	9.03
 DISTVERSIONSUFFIX=	.r1318
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	biology
 MASTER_SITES=	http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
 DISTNAME=	T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index bceb67391585..a9f98b84e13b 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	tinker
 PORTVERSION=	7.1.3
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 MASTER_SITES=	http://dasher.wustl.edu/tinker/downloads/