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authorgerald <gerald@FreeBSD.org>2017-09-11 04:55:38 +0800
committergerald <gerald@FreeBSD.org>2017-09-11 04:55:38 +0800
commita8659f2c3a739594f865ddb2381c38d14c4d611e (patch)
treeb2fdb90b31860ce377c34f790e4d2f4ed3dad14f /biology
parent7b70c817a4e56a6ba513c3a87fb89b520f7ea8e1 (diff)
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Bump PORTREVISION for ports depending on the canonical version of GCC
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275
Diffstat (limited to 'biology')
-rw-r--r--biology/bowtie/Makefile2
-rw-r--r--biology/cd-hit/Makefile2
-rw-r--r--biology/crux/Makefile2
-rw-r--r--biology/fasttree/Makefile2
-rw-r--r--biology/jellyfish/Makefile2
-rw-r--r--biology/molden/Makefile2
-rw-r--r--biology/mopac/Makefile2
-rw-r--r--biology/ncbi-blast+/Makefile2
-rw-r--r--biology/plink/Makefile2
-rw-r--r--biology/psi88/Makefile2
-rw-r--r--biology/seqan-apps/Makefile2
-rw-r--r--biology/seqtools/Makefile2
-rw-r--r--biology/ssaha/Makefile2
-rw-r--r--biology/t_coffee/Makefile2
-rw-r--r--biology/tinker/Makefile2
15 files changed, 15 insertions, 15 deletions
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index 8d419e80cf16..07561719db5e 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -3,7 +3,7 @@
PORTNAME= bowtie
PORTVERSION= 1.1.2
-PORTREVISION= 3
+PORTREVISION= 4
DISTVERSIONPREFIX= v
CATEGORIES= biology
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index 5c348f176127..f71685847cc8 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -3,7 +3,7 @@
PORTNAME= cd-hit
PORTVERSION= 4.6.6
-PORTREVISION= 1
+PORTREVISION= 2
DISTVERSIONPREFIX= V
CATEGORIES= biology
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
index 86b1fb5860e8..75f95844dda6 100644
--- a/biology/crux/Makefile
+++ b/biology/crux/Makefile
@@ -3,7 +3,7 @@
PORTNAME= crux
PORTVERSION= 1.2.0
-PORTREVISION= 7
+PORTREVISION= 8
CATEGORIES= biology python
MASTER_SITES= http://www.canonware.com/download/Crux/
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index 1dcc0db615ba..617ac37291d0 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -3,7 +3,7 @@
PORTNAME= FastTree
PORTVERSION= 2.1.8
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= http://www.microbesonline.org/fasttree/
EXTRACT_SUFX= .c
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 5225aae87fbd..22f1c3506485 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -3,7 +3,7 @@
PORTNAME= jellyfish
PORTVERSION= 2.2.6
-PORTREVISION= 1
+PORTREVISION= 2
DISTVERSIONPREFIX= v
CATEGORIES= biology
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index f24a91257ab9..999d80767849 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
PORTNAME= molden
PORTVERSION= 5.7
-PORTREVISION= 10
+PORTREVISION= 11
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index a160df902f3c..65b3d4a60d5b 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
PORTNAME= mopac
PORTVERSION= 7.${MOPAC_SUBVERSION}
-PORTREVISION= 2
+PORTREVISION= 3
PORTEPOCH= 1
CATEGORIES= biology
MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index d12f3154dc45..fe2cb96360f3 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -3,7 +3,7 @@
PORTNAME= blast+
PORTVERSION= 2.5.0
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ \
http://acadix.biz/Ports/distfiles/
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
index 43c14f1ddf97..98c9dd3e1dd3 100644
--- a/biology/plink/Makefile
+++ b/biology/plink/Makefile
@@ -3,7 +3,7 @@
PORTNAME= plink
PORTVERSION= 1.07
-PORTREVISION= 6
+PORTREVISION= 7
CATEGORIES= biology science
MASTER_SITES= http://pngu.mgh.harvard.edu/~purcell/plink/dist/
DISTNAME= ${PORTNAME}-${PORTVERSION}-src
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 89cb93ec4c80..6ce0d9fe629d 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
PORTNAME= psi88
PORTVERSION= 1.0
-PORTREVISION= 10
+PORTREVISION= 11
CATEGORIES= biology
MASTER_SITES= http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
DISTNAME= ${PORTNAME}
diff --git a/biology/seqan-apps/Makefile b/biology/seqan-apps/Makefile
index e18467daa1c5..541910be643d 100644
--- a/biology/seqan-apps/Makefile
+++ b/biology/seqan-apps/Makefile
@@ -4,7 +4,7 @@
PORTNAME= seqan-apps
PORTVERSION= 2.2.0
DISTVERSIONPREFIX= seqan-v
-PORTREVISION= 4
+PORTREVISION= 6
CATEGORIES= biology
MAINTAINER= h2+fbsdports@fsfe.org
diff --git a/biology/seqtools/Makefile b/biology/seqtools/Makefile
index a76ddf96aa65..20eb535a15a0 100644
--- a/biology/seqtools/Makefile
+++ b/biology/seqtools/Makefile
@@ -2,7 +2,7 @@
PORTNAME= seqtools
PORTVERSION= 4.44.1
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
index c7f6966f8a47..024151cd6d03 100644
--- a/biology/ssaha/Makefile
+++ b/biology/ssaha/Makefile
@@ -3,7 +3,7 @@
PORTNAME= ssaha
PORTVERSION= 3.1c
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= biology
MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
DISTNAME= ${PORTNAME}_v${PORTVERSION:S/.//}
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index d7a37f4b9c6e..ad4b555386d6 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
PORTNAME= t_coffee
PORTVERSION= 9.03
DISTVERSIONSUFFIX= .r1318
-PORTREVISION= 5
+PORTREVISION= 6
CATEGORIES= biology
MASTER_SITES= http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
DISTNAME= T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index a9f98b84e13b..66c499bc4931 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
PORTNAME= tinker
PORTVERSION= 7.1.3
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= biology
MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/