diff options
author | bapt <bapt@FreeBSD.org> | 2012-10-26 07:05:56 +0800 |
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committer | bapt <bapt@FreeBSD.org> | 2012-10-26 07:05:56 +0800 |
commit | b9188470ffb3f05bde694d4d1c25b9860cd1cd03 (patch) | |
tree | 79c19af554e3cc39ac10ad0222588e84a1a0b30a /biology | |
parent | 4d5d86ee578830528ae200e0ea23d2048eaafc2c (diff) | |
download | freebsd-ports-gnome-b9188470ffb3f05bde694d4d1c25b9860cd1cd03.tar.gz freebsd-ports-gnome-b9188470ffb3f05bde694d4d1c25b9860cd1cd03.tar.zst freebsd-ports-gnome-b9188470ffb3f05bde694d4d1c25b9860cd1cd03.zip |
2012-10-20 chinese/wangttf: No more public distfiles
2012-10-20 chinese/stardict-dict-zh_TW: No more public distfiles
2012-10-20 chinese/stardict-dict-zh_CN: No more public distfiles
2012-10-20 chinese/mingunittf: No more public distfiles
2012-10-20 chinese/dfsongsd: No more public distfiles
2012-10-20 biology/dna-qc: No more public distfiles
Feature safe: yes
Diffstat (limited to 'biology')
-rw-r--r-- | biology/Makefile | 1 | ||||
-rw-r--r-- | biology/dna-qc/Makefile | 55 | ||||
-rw-r--r-- | biology/dna-qc/distinfo | 2 | ||||
-rw-r--r-- | biology/dna-qc/files/patch-hybridize.c | 12 | ||||
-rw-r--r-- | biology/dna-qc/pkg-descr | 5 | ||||
-rw-r--r-- | biology/dna-qc/pkg-plist | 25 |
6 files changed, 0 insertions, 100 deletions
diff --git a/biology/Makefile b/biology/Makefile index 4956b22f782c..935b8c6c59d3 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -18,7 +18,6 @@ SUBDIR += clustalw SUBDIR += consed SUBDIR += crux - SUBDIR += dna-qc SUBDIR += dotter SUBDIR += embassy SUBDIR += emboss diff --git a/biology/dna-qc/Makefile b/biology/dna-qc/Makefile deleted file mode 100644 index 76aab5a81edf..000000000000 --- a/biology/dna-qc/Makefile +++ /dev/null @@ -1,55 +0,0 @@ -# New ports collection makefile for: dna-qc -# Date created: 25 Novemeber 2001 -# Whom: Tony Maher <tonym@biolateral.com.au> -# -# $FreeBSD$ -# - -PORTNAME= dna-qc -PORTVERSION= 1993.07.26 -CATEGORIES= biology -MASTER_SITES= ftp://ftp.tigr.org/pub/software/qc/ -DISTNAME= qc -EXTRACT_SUFX= .tar.Z - -MAINTAINER= ports@FreeBSD.org -COMMENT= A quality control algorithm for DNA sequencing projects - -DEPRECATED= No more public distfiles -EXPIRATION_DATE= 2012-10-20 - -NO_WRKSUBDIR= true - -EXAMPLES= README script.compare script.limits \ - bact.all chromosomeIII.all human.all worm.all -PROGRAMS= counter hybridize normalize random_clip random_line - -.include <bsd.port.pre.mk> - -.if ${ARCH} == "alpha" -BROKEN= Does not compile -.endif - -post-patch: - @${REINPLACE_CMD} -e 's,^CFLAGS,#CFLAGS,' ${WRKSRC}/Makefile - @${REINPLACE_CMD} -e 's,malloc.h,stdlib.h,' ${WRKSRC}/normalize.c - @${REINPLACE_CMD} -e 's,fname\*,fname,' ${WRKSRC}/random_line.c - @${REINPLACE_CMD} -e 's,static void allocate_pool,void allocate_pool,' \ - ${WRKSRC}/stringpool.c - -do-install: -.for file in ${PROGRAMS} - ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin - ${STRIP_CMD} ${PREFIX}/bin/${file} -.endfor -.if !defined(NOPORTDOCS) - @${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/qc_doc/* ${DOCSDIR} - ${INSTALL_DATA} ${WRKSRC}/surprize_doc/* ${DOCSDIR} - @${MKDIR} ${EXAMPLESDIR} -.for file in ${EXAMPLES} - ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR} -.endfor -.endif - -.include <bsd.port.post.mk> diff --git a/biology/dna-qc/distinfo b/biology/dna-qc/distinfo deleted file mode 100644 index 75b04ae97a1e..000000000000 --- a/biology/dna-qc/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (qc.tar.Z) = e17258a7b47fd2b6b53cd1794df3acd760a4cdfbfdb8573389dbb1076883ad27 -SIZE (qc.tar.Z) = 1084013 diff --git a/biology/dna-qc/files/patch-hybridize.c b/biology/dna-qc/files/patch-hybridize.c deleted file mode 100644 index 45dae76fc31e..000000000000 --- a/biology/dna-qc/files/patch-hybridize.c +++ /dev/null @@ -1,12 +0,0 @@ -$FreeBSD$ - ---- hybridize.c.orig Sat Nov 24 21:25:04 2001 -+++ hybridize.c Sat Nov 24 21:25:35 2001 -@@ -54,6 +54,7 @@ - extern unsigned array_to_base_4(); - extern unsigned string_to_base_4(); - extern int dna2i(); -+double logl(); - int *read_file(); - - main(argc, argv) diff --git a/biology/dna-qc/pkg-descr b/biology/dna-qc/pkg-descr deleted file mode 100644 index e9a85e146525..000000000000 --- a/biology/dna-qc/pkg-descr +++ /dev/null @@ -1,5 +0,0 @@ -"relevant reference: -White, O., T. Dunning, G. Sutton, M. Adams, J. C. Venter, and C. -Fields (1993). A quality control algorithm for DNA sequencing -projects. Nucleic Acids Research (in press)." -- from the README file diff --git a/biology/dna-qc/pkg-plist b/biology/dna-qc/pkg-plist deleted file mode 100644 index b9e9afbcf6b3..000000000000 --- a/biology/dna-qc/pkg-plist +++ /dev/null @@ -1,25 +0,0 @@ -bin/counter -bin/hybridize -bin/normalize -bin/random_clip -bin/random_line -%%PORTDOCS%%%%DOCSDIR%%/qc_algorithm.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig1.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig2a.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig2b.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig2c.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig3.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig4.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig5.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig6.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/qc_fig7.ps.Z -%%PORTDOCS%%%%DOCSDIR%%/surprize.ps.Z -%%PORTDOCS%%share/examples/dna-qc/README -%%PORTDOCS%%share/examples/dna-qc/bact.all -%%PORTDOCS%%share/examples/dna-qc/chromosomeIII.all -%%PORTDOCS%%share/examples/dna-qc/human.all -%%PORTDOCS%%share/examples/dna-qc/script.compare -%%PORTDOCS%%share/examples/dna-qc/script.limits -%%PORTDOCS%%share/examples/dna-qc/worm.all -%%PORTDOCS%%@dirrm share/examples/dna-qc -%%PORTDOCS%%@dirrm %%DOCSDIR%% |