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authormiwi <miwi@FreeBSD.org>2012-02-20 07:24:52 +0800
committermiwi <miwi@FreeBSD.org>2012-02-20 07:24:52 +0800
commite31ac70213ee6b445b7155646e4175545a44f2f6 (patch)
treec7b97d4497f47be56928d1f8bb2b76e82056e344 /biology
parent347f877738a6c110a208292790e12b9c382768a1 (diff)
downloadfreebsd-ports-gnome-e31ac70213ee6b445b7155646e4175545a44f2f6.tar.gz
freebsd-ports-gnome-e31ac70213ee6b445b7155646e4175545a44f2f6.tar.zst
freebsd-ports-gnome-e31ac70213ee6b445b7155646e4175545a44f2f6.zip
- Update MASTER_SITES and WWW: line
- Add LICENSE - Support PLIST_FILES PR: 164985 Submitted by: Ports Fury
Diffstat (limited to 'biology')
-rw-r--r--biology/gff2ps/Makefile35
-rw-r--r--biology/gff2ps/pkg-descr10
-rw-r--r--biology/gff2ps/pkg-plist3
3 files changed, 28 insertions, 20 deletions
diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile
index 2e4151842928..b95c40ae5545 100644
--- a/biology/gff2ps/Makefile
+++ b/biology/gff2ps/Makefile
@@ -9,36 +9,47 @@ PORTNAME= gff2ps
PORTVERSION= 0.98d
PORTREVISION= 2
CATEGORIES= biology
-MASTER_SITES= ftp://www1.imim.es/pub/gff_tools/gff2ps/:prog \
- http://www1.imim.es/software/gfftools/gff2ps_docs/manual/:doc
-DISTFILES= ${PORTNAME}_v${PORTVERSION}.gz:prog ${GFF2PS_MAN}.gz:doc
+MASTER_SITES= ftp://genome.crg.es/pub/gff_tools/gff2ps/ \
+ http://genome.crg.es/software/gfftools/gff2ps_docs/manual/:doc
+DISTFILES= ${PORTNAME}_v${PORTVERSION}.gz
+.if !defined(NOPORTDOCS)
+DISTFILES+= ${GFF2PS_MAN}.gz:doc
+.endif
MAINTAINER= ports@FreeBSD.org
COMMENT= Converts gff-formated genomic data-sets to PostScript
+LICENSE= GPLv2 # (or later)
+
RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \
bash:${PORTSDIR}/shells/bash
-GFF2PS_MAN= MANUAL_GFF2PS_v0.96.ps
-PATCH_WRKSRC= ${WRKDIR}
-
+NO_WRKSUBDIR= yes
NO_BUILD= yes
-post-patch:
- @${REINPLACE_CMD} -e 's,^#!/bin/bash,#!${LOCALBASE}/bin/bash,; \
- s,/usr/local/bin/gawk,${LOCALBASE}/bin/gawk,' ${WRKDIR}/gff2ps
+PORTDOCS= ${GFF2PS_MAN}
+PLIST_FILES= bin/${PORTNAME}
+
+GFF2PS_MAN= MANUAL_GFF2PS_v0.96.ps
do-extract:
@${MKDIR} ${WRKDIR}
@${GZCAT} ${DISTDIR}/${PORTNAME}_v${PORTVERSION}.gz \
> ${WRKDIR}/${PORTNAME}
+.if !defined(NOPORTDOCS)
@${GZCAT} ${DISTDIR}/${GFF2PS_MAN}.gz > ${WRKDIR}/${GFF2PS_MAN}
+.endif
+
+post-patch:
+ @${REINPLACE_CMD} -e \
+ 's|^#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \
+ s|/usr/local/bin/gawk|${LOCALBASE}/bin/gawk|' ${WRKSRC}/gff2ps
do-install:
- @${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin
-.ifndef(NOPORTDOCS)
+ ${INSTALL_SCRIPT} ${WRKDIR}/gff2ps ${PREFIX}/bin
+.if !defined(NOPORTDOCS)
@${MKDIR} ${DOCSDIR}
- @${INSTALL_DATA} ${WRKDIR}/${GFF2PS_MAN} ${DOCSDIR}
+ ${INSTALL_DATA} ${WRKDIR}/${GFF2PS_MAN} ${DOCSDIR}
.endif
.include <bsd.port.mk>
diff --git a/biology/gff2ps/pkg-descr b/biology/gff2ps/pkg-descr
index 2b95b1c331a1..ab2374a01ad8 100644
--- a/biology/gff2ps/pkg-descr
+++ b/biology/gff2ps/pkg-descr
@@ -1,6 +1,6 @@
-gff2ps is a script program developed with the aim of converting gff-formatted
-records into high quality one-dimensional plots in PostScript. Such plots maybe
-useful for comparing genomic structures and to visualizing outputs from genome
-annotation programs.
+gff2ps is a script program developed with the aim of converting
+gff-formatted records into high quality one-dimensional plots in
+PostScript. Such plots maybe useful for comparing genomic structures
+and to visualizing outputs from genome annotation programs.
-WWW: http://www1.imim.es/software/gfftools/GFF2PS.html
+WWW: http://genome.crg.es/software/gfftools/GFF2PS.html
diff --git a/biology/gff2ps/pkg-plist b/biology/gff2ps/pkg-plist
deleted file mode 100644
index 9b7f6e1fa96a..000000000000
--- a/biology/gff2ps/pkg-plist
+++ /dev/null
@@ -1,3 +0,0 @@
-bin/gff2ps
-%%PORTDOCS%%%%DOCSDIR%%/MANUAL_GFF2PS_v0.96.ps
-%%PORTDOCS%%@dirrm %%DOCSDIR%%