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authorrobak <robak@FreeBSD.org>2015-03-06 20:53:58 +0800
committerrobak <robak@FreeBSD.org>2015-03-06 20:53:58 +0800
commit02d86467cef48c561a22f701273959ffc490b45c (patch)
tree6aaa34972849b1932a61260cb8c4ccc3e3765ed9 /biology
parente940b3be493452fa1fd3c253fc838f360902bed4 (diff)
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biology/samtools: update 1.1 -> 1.2
PR: 198292 Submitted by: Reed Cartwright <cartwright@asu.edu>
Diffstat (limited to 'biology')
-rw-r--r--biology/samtools/Makefile5
-rw-r--r--biology/samtools/distinfo4
2 files changed, 5 insertions, 4 deletions
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 50376b733fae..7d9c8ef51b5d 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -2,7 +2,7 @@
# $FreeBSD$
PORTNAME= samtools
-PORTVERSION= 1.1
+PORTVERSION= 1.2
CATEGORIES= biology
MAINTAINER= cartwright@asu.edu
@@ -11,11 +11,12 @@ COMMENT= Tools for manipulating next-generation sequencing data
LICENSE= MIT
LICENSE_FILE= ${WRKSRC}/LICENSE
+BUILD_DEPENDS= htslib>=1.2:${PORTSDIR}/biology/htslib
LIB_DEPENDS= libhts.so:${PORTSDIR}/biology/htslib
USE_GITHUB= yes
GH_ACCOUNT= samtools
-GH_COMMIT= 34c6691
+GH_COMMIT= 6af451d
USES= gmake
SUB_FILES= pkg-message
diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo
index c77ae42c8be3..c53022888069 100644
--- a/biology/samtools/distinfo
+++ b/biology/samtools/distinfo
@@ -1,2 +1,2 @@
-SHA256 (samtools-1.1.tar.gz) = adf674bef85e6ffd88d19178a46f229fc033c7302610d5a51ef9709dd0346c59
-SIZE (samtools-1.1.tar.gz) = 4321336
+SHA256 (samtools-1.2.tar.gz) = a9f8695d2d7da23f2cbc6e34820eff9169966ed7dd52254b427e0036b16b1f23
+SIZE (samtools-1.2.tar.gz) = 4318928