diff options
| author | naddy <naddy@FreeBSD.org> | 2003-02-15 07:21:23 +0800 |
|---|---|---|
| committer | naddy <naddy@FreeBSD.org> | 2003-02-15 07:21:23 +0800 |
| commit | 3d08d64425d6086ba3a40be4da5ae5d1f45482c6 (patch) | |
| tree | 7ca533ed75ac0aca93260f2d507e25e6459625d8 /biology | |
| parent | 01453ff553152eedfdefe77e8f15e94a3ae983ab (diff) | |
| download | freebsd-ports-gnome-3d08d64425d6086ba3a40be4da5ae5d1f45482c6.tar.gz freebsd-ports-gnome-3d08d64425d6086ba3a40be4da5ae5d1f45482c6.tar.zst freebsd-ports-gnome-3d08d64425d6086ba3a40be4da5ae5d1f45482c6.zip | |
* Update to 3.13.
PR: 48255
Submitted by: David A. Bader <dbader@eece.unm.edu>
* Also honor CC/CFLAGS.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/paml/Makefile | 10 | ||||
| -rw-r--r-- | biology/paml/distinfo | 2 | ||||
| -rw-r--r-- | biology/paml/files/patch-src::Makefile | 12 | ||||
| -rw-r--r-- | biology/paml/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/paml/pkg-plist | 2 |
5 files changed, 7 insertions, 20 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile index 93d99e80f866..3a742742eaf8 100644 --- a/biology/paml/Makefile +++ b/biology/paml/Makefile @@ -6,18 +6,18 @@ # PORTNAME= paml -PORTVERSION= 3.1 +PORTVERSION= 3.13 CATEGORIES= biology MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/ -DISTNAME= paml3.1 -EXTRACT_SUFX= .tar.Z +DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= dbader@eece.unm.edu +COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) WRKSRC= ${WRKDIR}/${DISTNAME}/src +MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" -BINARIES= baseml basemlg chi2 codeml codemlsites evolver mcmctree \ - pamp yn00 +BINARIES= baseml basemlg chi2 codeml evolver mcmctree pamp yn00 do-install: .for f in ${BINARIES} diff --git a/biology/paml/distinfo b/biology/paml/distinfo index 1edfbcf51c88..acb906e15c1f 100644 --- a/biology/paml/distinfo +++ b/biology/paml/distinfo @@ -1 +1 @@ -MD5 (paml3.1.tar.Z) = dbf2b5a61a373518e5d27b837aec9df7 +MD5 (paml3.13.tar.gz) = a08ebd57332c9fe605439bf0025817bd diff --git a/biology/paml/files/patch-src::Makefile b/biology/paml/files/patch-src::Makefile deleted file mode 100644 index 9c24749fda4b..000000000000 --- a/biology/paml/files/patch-src::Makefile +++ /dev/null @@ -1,12 +0,0 @@ ---- Makefile.orig Thu Jul 19 12:01:33 2001 -+++ Makefile Tue Aug 28 19:07:55 2001 -@@ -1,7 +1,7 @@ - PRGS = baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2 --CC = cc # cc, gcc, cl -+CC = gcc # cc, gcc, cl - --CFLAGS = -fast -w -+CFLAGS = -O2 - - #CFLAGS = -w0 -warnprotos -newc -std -fast - #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 # diff --git a/biology/paml/pkg-comment b/biology/paml/pkg-comment deleted file mode 100644 index 28176e9a1ed1..000000000000 --- a/biology/paml/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Phylogenetic Analysis by Maximum Likelihood (PAML) diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 17ee1e6cd87c..752da1f20a6d 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -1,8 +1,8 @@ +@comment $FreeBSD$ bin/baseml bin/basemlg bin/chi2 bin/codeml -bin/codemlsites bin/evolver bin/mcmctree bin/pamp |