Update to 1.3r1.3913.

Actually the version number is from SVN, and maho@ manually
checked out from SVN.
The source archive is not distributed as tar ball.

4 files changed, 699 insertions, 636 deletions

diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index c15d04dbfa3b..665e0d1dde2b 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -5,8 +5,7 @@
 # $FreeBSD$
 
 PORTNAME=	pymol
-PORTVERSION=	1.0r2
-PORTREVISION=	5
+PORTVERSION=	${VERSION}.${SVNREVISION}
 CATEGORIES=	biology python
 MASTER_SITES=	${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|}
 
@@ -19,6 +18,10 @@ RUN_DEPENDS=	${PYNUMERIC} \
 LIB_DEPENDS=	png.6:${PORTSDIR}/graphics/png \
 		freetype.9:${PORTSDIR}/print/freetype2
 
+VERSION=	1.3r1
+SVNREVISION=	3913
+
+USE_BZIP2=	yes
 WRKSRC=		${WRKDIR}/pymol-${PORTVERSION}
 USE_GL=		glut
 USE_GMAKE=	yes
@@ -36,4 +39,13 @@ do-install:
 	; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install)
 	@${INSTALL_SCRIPT} ${WRKSRC}/pymol ${PREFIX}/bin/pymol
 
+#maintainance
+do-fetch-svn:
+	#svn ls https://pymol.svn.sourceforge.net/svnroot/pymol/tags
+	#http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/
+	${RM} -rf pymol-${VERSION}.${SVNREVISION}
+	svn -r ${SVNREVISION} export https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-${VERSION}.${SVNREVISION}
+	tar cvfj pymol-${VERSION}.${SVNREVISION}.tar.bz2 pymol-${VERSION}.${SVNREVISION}
+	scp pymol-${VERSION}.${SVNREVISION}.tar.bz2 freefall.freebsd.org:public_distfiles/pymol/
+
 .include <bsd.port.mk>
diff --git a/biology/pymol/distinfo b/biology/pymol/distinfo
index 5bf879c618ae..4885db859fdf 100644
--- a/biology/pymol/distinfo
+++ b/biology/pymol/distinfo
@@ -1,3 +1,3 @@
-MD5 (pymol-1.0r2.tar.gz) = 196bd9a8f7de6e7c9e77eacd463ce140
-SHA256 (pymol-1.0r2.tar.gz) = 876d1422c4fd9a8bb792ac38e960afb4cc59b54e0e0d26bf44daaeaff122b16f
-SIZE (pymol-1.0r2.tar.gz) = 7636761
+MD5 (pymol-1.3r1.3913.tar.bz2) = 585fd44cfc548afea855fdb786fbeb26
+SHA256 (pymol-1.3r1.3913.tar.bz2) = 32b1995d6c87d35b71fe5025e81e9b68b0d96d60825d8aac33685e70d73e8d87
+SIZE (pymol-1.3r1.3913.tar.bz2) = 6967557
diff --git a/biology/pymol/files/patch-setup.py b/biology/pymol/files/patch-setup.py
index 08bb35418fee..d81c647b7d31 100644
--- a/biology/pymol/files/patch-setup.py
+++ b/biology/pymol/files/patch-setup.py
@@ -1,19 +1,21 @@
---- setup.py.orig	2007-07-03 07:11:15.000000000 +0900
-+++ setup.py	2008-03-06 17:59:33.000000000 +0900
-@@ -88,6 +88,8 @@
-              "layer0","layer1","layer2",
-              "layer3","layer4","layer5",
-              "/usr/include/freetype2",
-+             "%%LOCALBASE%%/include",
-+             "%%LOCALBASE%%/include/freetype2",
- #             "/users/warren/ext/include",
+--- setup.py.bak	2010-09-16 10:45:18.000000000 +0900
++++ setup.py	2010-09-16 10:51:57.000000000 +0900
+@@ -127,7 +127,8 @@
+     inc_dirs=["ov/src",
+               "layer0","layer1","layer2",
+               "layer3","layer4","layer5",
+-              "/usr/include/freetype2",
++              "%%LOCALBASE%%/include",
++              "%%LOCALBASE%%/include/freetype2",
+ #                 "/users/warren/ext/include",
  # VMD plugin support
- #             "contrib/uiuc/plugins/include",
-@@ -98,6 +100,7 @@
-    pyogl_libs = ["GL","GLU","glut"]
-    lib_dirs=[
-       "/usr/X11R6/lib",
-+      "%%LOCALBASE%%/lib",
- #      "/users/warren/pymol/ext/lib"
-       ]
-    def_macros=[("_PYMOL_MODULE",None),
+ #              "contrib/uiuc/plugins/include",
+@@ -139,7 +140,7 @@
+           ]	
+     pyogl_libs = ["GL","GLU","glut"]
+     lib_dirs=[
+-        "/usr/X11R6/lib",
++         "%%LOCALBASE%%/lib",
+ #        "/users/warren/pymol/ext/lib"
+         ]
+     def_macros=[("_PYMOL_MODULE",None),
diff --git a/biology/pymol/pkg-plist b/biology/pymol/pkg-plist
index c3075955864a..8d8509e8bf8c 100644
--- a/biology/pymol/pkg-plist
+++ b/biology/pymol/pkg-plist
@@ -1,706 +1,754 @@
 bin/pymol
-%%PYTHON_SITELIBDIR%%/pymol/experimenting.py
-%%PYTHON_SITELIBDIR%%/pymol/wizarding.py
-%%PYTHON_SITELIBDIR%%/pymol/creating.py
+%%PYTHON_SITELIBDIR%%/chempy/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/arc.py
+%%PYTHON_SITELIBDIR%%/chempy/arc.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bmin/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/bmin/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bmin/commands.py
+%%PYTHON_SITELIBDIR%%/chempy/bmin/commands.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bmin/realtime.py
+%%PYTHON_SITELIBDIR%%/chempy/bmin/realtime.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bmin/state.py
+%%PYTHON_SITELIBDIR%%/chempy/bmin/state.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bmin/util.py
+%%PYTHON_SITELIBDIR%%/chempy/bmin/util.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bond_amber.py
+%%PYTHON_SITELIBDIR%%/chempy/bond_amber.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bond_mmff.py
+%%PYTHON_SITELIBDIR%%/chempy/bond_mmff.pyc
+%%PYTHON_SITELIBDIR%%/chempy/bonds.py
+%%PYTHON_SITELIBDIR%%/chempy/bonds.pyc
+%%PYTHON_SITELIBDIR%%/chempy/brick.py
+%%PYTHON_SITELIBDIR%%/chempy/brick.pyc
+%%PYTHON_SITELIBDIR%%/chempy/cc1.py
+%%PYTHON_SITELIBDIR%%/chempy/cc1.pyc
+%%PYTHON_SITELIBDIR%%/chempy/cex.py
+%%PYTHON_SITELIBDIR%%/chempy/cex.pyc
+%%PYTHON_SITELIBDIR%%/chempy/champ/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/champ/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/champ/_champ.so
+%%PYTHON_SITELIBDIR%%/chempy/champ/amber99.py
+%%PYTHON_SITELIBDIR%%/chempy/champ/amber99.pyc
+%%PYTHON_SITELIBDIR%%/chempy/champ/assign.py
+%%PYTHON_SITELIBDIR%%/chempy/champ/assign.pyc
+%%PYTHON_SITELIBDIR%%/chempy/champ/formal_charges.py
+%%PYTHON_SITELIBDIR%%/chempy/champ/formal_charges.pyc
+%%PYTHON_SITELIBDIR%%/chempy/charge.py
+%%PYTHON_SITELIBDIR%%/chempy/charge.pyc
+%%PYTHON_SITELIBDIR%%/chempy/cif.py
+%%PYTHON_SITELIBDIR%%/chempy/cif.pyc
+%%PYTHON_SITELIBDIR%%/chempy/cpv.py
+%%PYTHON_SITELIBDIR%%/chempy/cpv.pyc
+%%PYTHON_SITELIBDIR%%/chempy/dictdb.py
+%%PYTHON_SITELIBDIR%%/chempy/dictdb.pyc
+%%PYTHON_SITELIBDIR%%/chempy/fast/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/fast/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/fragments/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/fragments/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/gamess1.py
+%%PYTHON_SITELIBDIR%%/chempy/gamess1.pyc
+%%PYTHON_SITELIBDIR%%/chempy/gms.py
+%%PYTHON_SITELIBDIR%%/chempy/gms.pyc
+%%PYTHON_SITELIBDIR%%/chempy/hetatm.py
+%%PYTHON_SITELIBDIR%%/chempy/hetatm.pyc
+%%PYTHON_SITELIBDIR%%/chempy/io.py
+%%PYTHON_SITELIBDIR%%/chempy/io.pyc
+%%PYTHON_SITELIBDIR%%/chempy/lst.py
+%%PYTHON_SITELIBDIR%%/chempy/lst.pyc
+%%PYTHON_SITELIBDIR%%/chempy/mae.py
+%%PYTHON_SITELIBDIR%%/chempy/mae.pyc
+%%PYTHON_SITELIBDIR%%/chempy/map.py
+%%PYTHON_SITELIBDIR%%/chempy/map.pyc
+%%PYTHON_SITELIBDIR%%/chempy/mass.py
+%%PYTHON_SITELIBDIR%%/chempy/mass.pyc
+%%PYTHON_SITELIBDIR%%/chempy/mmd.py
+%%PYTHON_SITELIBDIR%%/chempy/mmd.pyc
+%%PYTHON_SITELIBDIR%%/chempy/models.py
+%%PYTHON_SITELIBDIR%%/chempy/models.pyc
+%%PYTHON_SITELIBDIR%%/chempy/mol.py
+%%PYTHON_SITELIBDIR%%/chempy/mol.pyc
+%%PYTHON_SITELIBDIR%%/chempy/neighbor.py
+%%PYTHON_SITELIBDIR%%/chempy/neighbor.pyc
+%%PYTHON_SITELIBDIR%%/chempy/pdb.py
+%%PYTHON_SITELIBDIR%%/chempy/pdb.pyc
+%%PYTHON_SITELIBDIR%%/chempy/pkl.py
+%%PYTHON_SITELIBDIR%%/chempy/pkl.pyc
+%%PYTHON_SITELIBDIR%%/chempy/place.py
+%%PYTHON_SITELIBDIR%%/chempy/place.pyc
+%%PYTHON_SITELIBDIR%%/chempy/protein.py
+%%PYTHON_SITELIBDIR%%/chempy/protein.pyc
+%%PYTHON_SITELIBDIR%%/chempy/protein_amber.py
+%%PYTHON_SITELIBDIR%%/chempy/protein_amber.pyc
+%%PYTHON_SITELIBDIR%%/chempy/protein_amber99.py
+%%PYTHON_SITELIBDIR%%/chempy/protein_amber99.pyc
+%%PYTHON_SITELIBDIR%%/chempy/protein_mmff.py
+%%PYTHON_SITELIBDIR%%/chempy/protein_mmff.pyc
+%%PYTHON_SITELIBDIR%%/chempy/protein_residues.py
+%%PYTHON_SITELIBDIR%%/chempy/protein_residues.pyc
+%%PYTHON_SITELIBDIR%%/chempy/sdf.py
+%%PYTHON_SITELIBDIR%%/chempy/sdf.pyc
+%%PYTHON_SITELIBDIR%%/chempy/solvate.py
+%%PYTHON_SITELIBDIR%%/chempy/solvate.pyc
+%%PYTHON_SITELIBDIR%%/chempy/tinker/__init__.py
+%%PYTHON_SITELIBDIR%%/chempy/tinker/__init__.pyc
+%%PYTHON_SITELIBDIR%%/chempy/tinker/amber.py
+%%PYTHON_SITELIBDIR%%/chempy/tinker/amber.pyc
+%%PYTHON_SITELIBDIR%%/chempy/tinker/keyword.py
+%%PYTHON_SITELIBDIR%%/chempy/tinker/keyword.pyc
+%%PYTHON_SITELIBDIR%%/chempy/tinker/realtime.py
+%%PYTHON_SITELIBDIR%%/chempy/tinker/realtime.pyc
+%%PYTHON_SITELIBDIR%%/chempy/tinker/state.py
+%%PYTHON_SITELIBDIR%%/chempy/tinker/state.pyc
+%%PYTHON_SITELIBDIR%%/chempy/water_amber.py
+%%PYTHON_SITELIBDIR%%/chempy/water_amber.pyc
+%%PYTHON_SITELIBDIR%%/chempy/water_residues.py
+%%PYTHON_SITELIBDIR%%/chempy/water_residues.pyc
+%%PYTHON_SITELIBDIR%%/chempy/xyz.py
+%%PYTHON_SITELIBDIR%%/chempy/xyz.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/ColorEditor.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/Demo.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/Demo.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/PMGApp.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/SetEditor.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/Setting.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/Setting.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/__init__.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/skins/normal/builder.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/apbs_tools.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/apbs_tools.pyc
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/remote_pdb_load.py
+%%PYTHON_SITELIBDIR%%/pmg_tk/startup/remote_pdb_load.pyc
+%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.py
+%%PYTHON_SITELIBDIR%%/pmg_wx/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pymol-1.2.0-py%%PYTHON_VER%%.egg-info
 %%PYTHON_SITELIBDIR%%/pymol/__init__.py
-%%PYTHON_SITELIBDIR%%/pymol/moving.py
+%%PYTHON_SITELIBDIR%%/pymol/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pymol/_cmd.so
+%%PYTHON_SITELIBDIR%%/pymol/api.py
+%%PYTHON_SITELIBDIR%%/pymol/api.pyc
+%%PYTHON_SITELIBDIR%%/pymol/callback.py
+%%PYTHON_SITELIBDIR%%/pymol/callback.pyc
+%%PYTHON_SITELIBDIR%%/pymol/cgo.py
+%%PYTHON_SITELIBDIR%%/pymol/cgo.pyc
+%%PYTHON_SITELIBDIR%%/pymol/checking.py
+%%PYTHON_SITELIBDIR%%/pymol/checking.pyc
+%%PYTHON_SITELIBDIR%%/pymol/cmd.py
+%%PYTHON_SITELIBDIR%%/pymol/cmd.pyc
+%%PYTHON_SITELIBDIR%%/pymol/commanding.py
+%%PYTHON_SITELIBDIR%%/pymol/commanding.pyc
 %%PYTHON_SITELIBDIR%%/pymol/completing.py
+%%PYTHON_SITELIBDIR%%/pymol/completing.pyc
+%%PYTHON_SITELIBDIR%%/pymol/computing.py
+%%PYTHON_SITELIBDIR%%/pymol/computing.pyc
+%%PYTHON_SITELIBDIR%%/pymol/constants.py
+%%PYTHON_SITELIBDIR%%/pymol/constants.pyc
+%%PYTHON_SITELIBDIR%%/pymol/contrib/__init__.py
+%%PYTHON_SITELIBDIR%%/pymol/contrib/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pymol/controlling.py
+%%PYTHON_SITELIBDIR%%/pymol/controlling.pyc
+%%PYTHON_SITELIBDIR%%/pymol/creating.py
+%%PYTHON_SITELIBDIR%%/pymol/creating.pyc
+%%PYTHON_SITELIBDIR%%/pymol/editing.py
+%%PYTHON_SITELIBDIR%%/pymol/editing.pyc
+%%PYTHON_SITELIBDIR%%/pymol/editor.py
+%%PYTHON_SITELIBDIR%%/pymol/editor.pyc
+%%PYTHON_SITELIBDIR%%/pymol/experimenting.py
+%%PYTHON_SITELIBDIR%%/pymol/experimenting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/exporting.py
+%%PYTHON_SITELIBDIR%%/pymol/exporting.pyc
 %%PYTHON_SITELIBDIR%%/pymol/externing.py
-%%PYTHON_SITELIBDIR%%/pymol/preset.py
-%%PYTHON_SITELIBDIR%%/pymol/api.py
-%%PYTHON_SITELIBDIR%%/pymol/parsing.py
-%%PYTHON_SITELIBDIR%%/pymol/menu.py
+%%PYTHON_SITELIBDIR%%/pymol/externing.pyc
+%%PYTHON_SITELIBDIR%%/pymol/feedingback.py
+%%PYTHON_SITELIBDIR%%/pymol/feedingback.pyc
 %%PYTHON_SITELIBDIR%%/pymol/fitting.py
-%%PYTHON_SITELIBDIR%%/pymol/m4x.py
+%%PYTHON_SITELIBDIR%%/pymol/fitting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/gui.py
+%%PYTHON_SITELIBDIR%%/pymol/gui.pyc
+%%PYTHON_SITELIBDIR%%/pymol/helping.py
+%%PYTHON_SITELIBDIR%%/pymol/helping.pyc
 %%PYTHON_SITELIBDIR%%/pymol/importing.py
-%%PYTHON_SITELIBDIR%%/pymol/cgo.py
+%%PYTHON_SITELIBDIR%%/pymol/importing.pyc
 %%PYTHON_SITELIBDIR%%/pymol/internal.py
-%%PYTHON_SITELIBDIR%%/pymol/controlling.py
-%%PYTHON_SITELIBDIR%%/pymol/selecting.py
-%%PYTHON_SITELIBDIR%%/pymol/util.py
-%%PYTHON_SITELIBDIR%%/pymol/feedingback.py
-%%PYTHON_SITELIBDIR%%/pymol/exporting.py
-%%PYTHON_SITELIBDIR%%/pymol/locking.py
-%%PYTHON_SITELIBDIR%%/pymol/editor.py
-%%PYTHON_SITELIBDIR%%/pymol/callback.py
-%%PYTHON_SITELIBDIR%%/pymol/parser.py
-%%PYTHON_SITELIBDIR%%/pymol/vfont.py
+%%PYTHON_SITELIBDIR%%/pymol/internal.pyc
+%%PYTHON_SITELIBDIR%%/pymol/invocation.py
+%%PYTHON_SITELIBDIR%%/pymol/invocation.pyc
 %%PYTHON_SITELIBDIR%%/pymol/keyboard.py
+%%PYTHON_SITELIBDIR%%/pymol/keyboard.pyc
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-%%PYTHON_SITELIBDIR%%/pymol/xray.py
-%%PYTHON_SITELIBDIR%%/pymol/contrib.py
-%%PYTHON_SITELIBDIR%%/pymol/cmd.py
-%%PYTHON_SITELIBDIR%%/pymol/querying.py
-%%PYTHON_SITELIBDIR%%/pymol/viewing.py
-%%PYTHON_SITELIBDIR%%/pymol/invocation.py
-%%PYTHON_SITELIBDIR%%/pymol/checking.py
-%%PYTHON_SITELIBDIR%%/pymol/constants.py
-%%PYTHON_SITELIBDIR%%/pymol/rpc.py
-%%PYTHON_SITELIBDIR%%/pymol/shortcut.py
-%%PYTHON_SITELIBDIR%%/pymol/commanding.py
-%%PYTHON_SITELIBDIR%%/pymol/setting.py
-%%PYTHON_SITELIBDIR%%/pymol/movie.py
-%%PYTHON_SITELIBDIR%%/pymol/povray.py
-%%PYTHON_SITELIBDIR%%/pymol/selector.py
-%%PYTHON_SITELIBDIR%%/pymol/editing.py
+%%PYTHON_SITELIBDIR%%/pymol/keywords.pyc
+%%PYTHON_SITELIBDIR%%/pymol/locking.py
+%%PYTHON_SITELIBDIR%%/pymol/locking.pyc
+%%PYTHON_SITELIBDIR%%/pymol/m4x.py
+%%PYTHON_SITELIBDIR%%/pymol/m4x.pyc
+%%PYTHON_SITELIBDIR%%/pymol/menu.py
+%%PYTHON_SITELIBDIR%%/pymol/menu.pyc
 %%PYTHON_SITELIBDIR%%/pymol/monitoring.py
-%%PYTHON_SITELIBDIR%%/pymol/xwin.py
-%%PYTHON_SITELIBDIR%%/pymol/helping.py
+%%PYTHON_SITELIBDIR%%/pymol/monitoring.pyc
+%%PYTHON_SITELIBDIR%%/pymol/movie.py
+%%PYTHON_SITELIBDIR%%/pymol/movie.pyc
+%%PYTHON_SITELIBDIR%%/pymol/moving.py
+%%PYTHON_SITELIBDIR%%/pymol/moving.pyc
 %%PYTHON_SITELIBDIR%%/pymol/opengl/__init__.py
-%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/glconst.py
+%%PYTHON_SITELIBDIR%%/pymol/opengl/__init__.pyc
 %%PYTHON_SITELIBDIR%%/pymol/opengl/gl/__init__.py
-%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/_opengl_num.so
+%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/__init__.pyc
 %%PYTHON_SITELIBDIR%%/pymol/opengl/gl/_opengl.so
+%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/_opengl_num.so
+%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/glconst.py
+%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/glconst.pyc
 %%PYTHON_SITELIBDIR%%/pymol/opengl/gl/openglutil.so
 %%PYTHON_SITELIBDIR%%/pymol/opengl/gl/openglutil_num.so
-%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/glconst.pyc
-%%PYTHON_SITELIBDIR%%/pymol/opengl/gl/__init__.pyc
-%%PYTHON_SITELIBDIR%%/pymol/opengl/glu/gluconst.py
 %%PYTHON_SITELIBDIR%%/pymol/opengl/glu/__init__.py
-%%PYTHON_SITELIBDIR%%/pymol/opengl/glu/_glu_num.so
+%%PYTHON_SITELIBDIR%%/pymol/opengl/glu/__init__.pyc
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+%%PYTHON_SITELIBDIR%%/pymol/wizard/sculpting.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/security.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/security.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/stereodemo.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/stereodemo.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizard/toggle.py
+%%PYTHON_SITELIBDIR%%/pymol/wizard/toggle.pyc
+%%PYTHON_SITELIBDIR%%/pymol/wizarding.py
+%%PYTHON_SITELIBDIR%%/pymol/wizarding.pyc
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+%%PYTHON_SITELIBDIR%%/pymol/xwin.py
+%%PYTHON_SITELIBDIR%%/pymol/xwin.pyc
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/wizard
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/ref
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/pymol_path/test/inp
@@ -732,6 +780,7 @@ bin/pymol
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl/glu
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl/gl
 @dirrm %%PYTHON_SITELIBDIR%%/pymol/opengl
+@dirrm %%PYTHON_SITELIBDIR%%/pymol/contrib
 @dirrm %%PYTHON_SITELIBDIR%%/pymol
 @dirrm %%PYTHON_SITELIBDIR%%/pmg_wx
 @dirrm %%PYTHON_SITELIBDIR%%/pmg_tk/startup