Add raster3d, a set of tools for generating raster images of proteins

and molecules.

PR:		96444
Submitted by:	Shaun Amott <shaun@inerd.com>

7 files changed, 793 insertions, 0 deletions

diff --git a/graphics/raster3d/Makefile b/graphics/raster3d/Makefile
new file mode 100644
index 000000000000..db2c150eabe9
--- /dev/null
+++ b/graphics/raster3d/Makefile
@@ -0,0 +1,65 @@
+# New ports collection makefile for:	Raster3D
+# Date Created:				2006-04-28
+# Whom:					Shaun Amott <shaun@inerd.com>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	raster3d
+DISTVERSION=	2.7d
+CATEGORIES=	graphics biology
+MASTER_SITES=	http://skuld.bmsc.washington.edu/${PORTNAME}/
+DISTNAME=	Raster3D_${DISTVERSION}
+
+MAINTAINER=	shaun@inerd.com
+COMMENT=	A set of tools for generating raster images of proteins and molecules
+
+LIB_DEPENDS=	png.5:${PORTSDIR}/graphics/png \
+		tiff.4:${PORTSDIR}/graphics/tiff
+
+BINARIES=	avs2ps balls rastep render ribbon rings3d rods normal3d
+SCRIPTS=	label3d stereo3d
+
+MAKE_ENV+=	FFLAGS="${FFLAGS}"
+
+.if !defined(WITHOUT_IMAGEMAGICK)
+RUN_DEPENDS=	convert:${PORTSDIR}/graphics/ImageMagick
+PLIST_SUB+=	IMAGEMAGICK=""
+.else
+PLIST_SUB+=	IMAGEMAGICK="@comment "
+.endif
+
+MANL=		avs2ps.l label3d.l r3d_objects.l rastep.l render.l rods.l  \
+		balls.l normal3d.l r3dtops.l raster3d.l ribbon.l stereo3d.l
+
+.include <bsd.port.pre.mk>
+
+.if ${OSVERSION} < 500000
+EXTRA_PATCHES=	${FILESDIR}/extrapatch-avs2ps.c ${FILESDIR}/extrapatch-in.h
+.endif
+
+pre-build:
+	@cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} freebsd
+
+do-install:
+	cd ${WRKSRC} && ${INSTALL_PROGRAM} ${BINARIES} ${PREFIX}/bin
+.if !defined(WITHOUT_IMAGEMAGICK)
+	cd ${WRKSRC} && ${INSTALL_SCRIPT} ${SCRIPTS} ${PREFIX}/bin
+.endif
+	@${MKDIR} ${DATADIR}/materials
+	cd ${WRKSRC}/materials && ${INSTALL_DATA} * ${DATADIR}/materials
+
+	cd ${WRKSRC}/doc && ${INSTALL_MAN} ${MANL} ${MANLPREFIX}/man/manl
+
+post-install:
+.if !defined(NOPORTDOCS)
+	@${MKDIR} ${DOCSDIR}/html
+	cd ${WRKSRC}/doc && ${INSTALL_DATA} R3D_manual.pdf ${DOCSDIR}
+	cd ${WRKSRC}/html && ${INSTALL_DATA} * ${DOCSDIR}/html
+
+	@${MKDIR} ${EXAMPLESDIR}/msms
+	cd ${WRKSRC}/examples && ${INSTALL_DATA} *.* ${EXAMPLESDIR}
+	cd ${WRKSRC}/examples/msms && ${INSTALL_DATA} * ${EXAMPLESDIR}/msms
+.endif
+
+.include <bsd.port.post.mk>
diff --git a/graphics/raster3d/distinfo b/graphics/raster3d/distinfo
new file mode 100644
index 000000000000..7f261902451c
--- /dev/null
+++ b/graphics/raster3d/distinfo
@@ -0,0 +1,3 @@
+MD5 (Raster3D_2.7d.tar.gz) = 755445130a4292abf047cd6740b919b2
+SHA256 (Raster3D_2.7d.tar.gz) = 80c2442e38291473b6d66475b7a6511f34868ecfbec7e553b444a0820db50e91
+SIZE (Raster3D_2.7d.tar.gz) = 1724348
diff --git a/graphics/raster3d/files/extrapatch-avs2ps.c b/graphics/raster3d/files/extrapatch-avs2ps.c
new file mode 100644
index 000000000000..d610a5d85d41
--- /dev/null
+++ b/graphics/raster3d/files/extrapatch-avs2ps.c
@@ -0,0 +1,11 @@
+--- avs2ps.c.orig	Fri Apr 28 15:34:10 2006
++++ avs2ps.c	Fri Apr 28 15:35:09 2006
+@@ -10,7 +10,7 @@
+ #include	<math.h>
+ #include	<string.h>
+ #include	<stdlib.h>
+-#include	<netinet/in.h>
++#include	"in.h"
+ 
+ #ifdef WIN32
+ #define random rand
diff --git a/graphics/raster3d/files/extrapatch-in.h b/graphics/raster3d/files/extrapatch-in.h
new file mode 100644
index 000000000000..e97a127f34c7
--- /dev/null
+++ b/graphics/raster3d/files/extrapatch-in.h
@@ -0,0 +1,521 @@
+--- in.h.orig	Fri Apr 28 15:38:06 2006
++++ in.h	Fri Apr 28 15:38:06 2006
+@@ -0,0 +1,518 @@
++/*
++ * Copyright (c) 1982, 1986, 1990, 1993
++ *	The Regents of the University of California.  All rights reserved.
++ *
++ * Redistribution and use in source and binary forms, with or without
++ * modification, are permitted provided that the following conditions
++ * are met:
++ * 1. Redistributions of source code must retain the above copyright
++ *    notice, this list of conditions and the following disclaimer.
++ * 2. Redistributions in binary form must reproduce the above copyright
++ *    notice, this list of conditions and the following disclaimer in the
++ *    documentation and/or other materials provided with the distribution.
++ * 3. All advertising materials mentioning features or use of this software
++ *    must display the following acknowledgement:
++ *	This product includes software developed by the University of
++ *	California, Berkeley and its contributors.
++ * 4. Neither the name of the University nor the names of its contributors
++ *    may be used to endorse or promote products derived from this software
++ *    without specific prior written permission.
++ *
++ * THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
++ * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
++ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
++ * ARE DISCLAIMED.  IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
++ * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
++ * DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
++ * OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
++ * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
++ * LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
++ * OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
++ * SUCH DAMAGE.
++ *
++ *	@(#)in.h	8.3 (Berkeley) 1/3/94
++ * $FreeBSD: /tmp/pcvs/ports/graphics/raster3d/files/Attic/extrapatch-in.h,v 1.1 2006-04-28 14:20:45 ehaupt Exp $
++ */
++
++#ifndef _NETINET_IN_H_
++#define _NETINET_IN_H_
++
++#include <sys/types.h>
++
++/*
++ * Constants and structures defined by the internet system,
++ * Per RFC 790, September 1981, and numerous additions.
++ */
++
++/*
++ * Protocols (RFC 1700)
++ */
++#define	IPPROTO_IP		0		/* dummy for IP */
++#define	IPPROTO_HOPOPTS		0		/* IP6 hop-by-hop options */
++#define	IPPROTO_ICMP		1		/* control message protocol */
++#define	IPPROTO_IGMP		2		/* group mgmt protocol */
++#define	IPPROTO_GGP		3		/* gateway^2 (deprecated) */
++#define IPPROTO_IPV4		4 		/* IPv4 encapsulation */
++#define IPPROTO_IPIP		IPPROTO_IPV4	/* for compatibility */
++#define	IPPROTO_TCP		6		/* tcp */
++#define	IPPROTO_ST		7		/* Stream protocol II */
++#define	IPPROTO_EGP		8		/* exterior gateway protocol */
++#define	IPPROTO_PIGP		9		/* private interior gateway */
++#define	IPPROTO_RCCMON		10		/* BBN RCC Monitoring */
++#define	IPPROTO_NVPII		11		/* network voice protocol*/
++#define	IPPROTO_PUP		12		/* pup */
++#define	IPPROTO_ARGUS		13		/* Argus */
++#define	IPPROTO_EMCON		14		/* EMCON */
++#define	IPPROTO_XNET		15		/* Cross Net Debugger */
++#define	IPPROTO_CHAOS		16		/* Chaos*/
++#define	IPPROTO_UDP		17		/* user datagram protocol */
++#define	IPPROTO_MUX		18		/* Multiplexing */
++#define	IPPROTO_MEAS		19		/* DCN Measurement Subsystems */
++#define	IPPROTO_HMP		20		/* Host Monitoring */
++#define	IPPROTO_PRM		21		/* Packet Radio Measurement */
++#define	IPPROTO_IDP		22		/* xns idp */
++#define	IPPROTO_TRUNK1		23		/* Trunk-1 */
++#define	IPPROTO_TRUNK2		24		/* Trunk-2 */
++#define	IPPROTO_LEAF1		25		/* Leaf-1 */
++#define	IPPROTO_LEAF2		26		/* Leaf-2 */
++#define	IPPROTO_RDP		27		/* Reliable Data */
++#define	IPPROTO_IRTP		28		/* Reliable Transaction */
++#define	IPPROTO_TP		29 		/* tp-4 w/ class negotiation */
++#define	IPPROTO_BLT		30		/* Bulk Data Transfer */
++#define	IPPROTO_NSP		31		/* Network Services */
++#define	IPPROTO_INP		32		/* Merit Internodal */
++#define	IPPROTO_SEP		33		/* Sequential Exchange */
++#define	IPPROTO_3PC		34		/* Third Party Connect */
++#define	IPPROTO_IDPR		35		/* InterDomain Policy Routing */
++#define	IPPROTO_XTP		36		/* XTP */
++#define	IPPROTO_DDP		37		/* Datagram Delivery */
++#define	IPPROTO_CMTP		38		/* Control Message Transport */
++#define	IPPROTO_TPXX		39		/* TP++ Transport */
++#define	IPPROTO_IL		40		/* IL transport protocol */
++#define	IPPROTO_IPV6		41		/* IP6 header */
++#define	IPPROTO_SDRP		42		/* Source Demand Routing */
++#define	IPPROTO_ROUTING		43		/* IP6 routing header */
++#define	IPPROTO_FRAGMENT	44		/* IP6 fragmentation header */
++#define	IPPROTO_IDRP		45		/* InterDomain Routing*/
++#define	IPPROTO_RSVP		46 		/* resource reservation */
++#define	IPPROTO_GRE		47		/* General Routing Encap. */
++#define	IPPROTO_MHRP		48		/* Mobile Host Routing */
++#define	IPPROTO_BHA		49		/* BHA */
++#define	IPPROTO_ESP		50		/* IP6 Encap Sec. Payload */
++#define	IPPROTO_AH		51		/* IP6 Auth Header */
++#define	IPPROTO_INLSP		52		/* Integ. Net Layer Security */
++#define	IPPROTO_SWIPE		53		/* IP with encryption */
++#define	IPPROTO_NHRP		54		/* Next Hop Resolution */
++#define	IPPROTO_MOBILE		55		/* IP Mobility */
++#define	IPPROTO_TLSP		56		/* Transport Layer Security */
++#define	IPPROTO_SKIP		57		/* SKIP */
++#define	IPPROTO_ICMPV6		58		/* ICMP6 */
++#define	IPPROTO_NONE		59		/* IP6 no next header */
++#define	IPPROTO_DSTOPTS		60		/* IP6 destination option */
++#define	IPPROTO_AHIP		61		/* any host internal protocol */
++#define	IPPROTO_CFTP		62		/* CFTP */
++#define	IPPROTO_HELLO		63		/* "hello" routing protocol */
++#define	IPPROTO_SATEXPAK	64		/* SATNET/Backroom EXPAK */
++#define	IPPROTO_KRYPTOLAN	65		/* Kryptolan */
++#define	IPPROTO_RVD		66		/* Remote Virtual Disk */
++#define	IPPROTO_IPPC		67		/* Pluribus Packet Core */
++#define	IPPROTO_ADFS		68		/* Any distributed FS */
++#define	IPPROTO_SATMON		69		/* Satnet Monitoring */
++#define	IPPROTO_VISA		70		/* VISA Protocol */
++#define	IPPROTO_IPCV		71		/* Packet Core Utility */
++#define	IPPROTO_CPNX		72		/* Comp. Prot. Net. Executive */
++#define	IPPROTO_CPHB		73		/* Comp. Prot. HeartBeat */
++#define	IPPROTO_WSN		74		/* Wang Span Network */
++#define	IPPROTO_PVP		75		/* Packet Video Protocol */
++#define	IPPROTO_BRSATMON	76		/* BackRoom SATNET Monitoring */
++#define	IPPROTO_ND		77		/* Sun net disk proto (temp.) */
++#define	IPPROTO_WBMON		78		/* WIDEBAND Monitoring */
++#define	IPPROTO_WBEXPAK		79		/* WIDEBAND EXPAK */
++#define	IPPROTO_EON		80		/* ISO cnlp */
++#define	IPPROTO_VMTP		81		/* VMTP */
++#define	IPPROTO_SVMTP		82		/* Secure VMTP */
++#define	IPPROTO_VINES		83		/* Banyon VINES */
++#define	IPPROTO_TTP		84		/* TTP */
++#define	IPPROTO_IGP		85		/* NSFNET-IGP */
++#define	IPPROTO_DGP		86		/* dissimilar gateway prot. */
++#define	IPPROTO_TCF		87		/* TCF */
++#define	IPPROTO_IGRP		88		/* Cisco/GXS IGRP */
++#define	IPPROTO_OSPFIGP		89		/* OSPFIGP */
++#define	IPPROTO_SRPC		90		/* Strite RPC protocol */
++#define	IPPROTO_LARP		91		/* Locus Address Resoloution */
++#define	IPPROTO_MTP		92		/* Multicast Transport */
++#define	IPPROTO_AX25		93		/* AX.25 Frames */
++#define	IPPROTO_IPEIP		94		/* IP encapsulated in IP */
++#define	IPPROTO_MICP		95		/* Mobile Int.ing control */
++#define	IPPROTO_SCCSP		96		/* Semaphore Comm. security */
++#define	IPPROTO_ETHERIP		97		/* Ethernet IP encapsulation */
++#define	IPPROTO_ENCAP		98		/* encapsulation header */
++#define	IPPROTO_APES		99		/* any private encr. scheme */
++#define	IPPROTO_GMTP		100		/* GMTP*/
++#define	IPPROTO_IPCOMP		108		/* payload compression (IPComp) */
++/* 101-254: Partly Unassigned */
++#define	IPPROTO_PIM		103		/* Protocol Independent Mcast */
++#define	IPPROTO_PGM		113		/* PGM */
++/* 255: Reserved */
++/* BSD Private, local use, namespace incursion */
++#define	IPPROTO_DIVERT		254		/* divert pseudo-protocol */
++#define	IPPROTO_RAW		255		/* raw IP packet */
++#define	IPPROTO_MAX		256
++
++/* last return value of *_input(), meaning "all job for this pkt is done".  */
++#define	IPPROTO_DONE		257
++
++/*
++ * Local port number conventions:
++ *
++ * When a user does a bind(2) or connect(2) with a port number of zero,
++ * a non-conflicting local port address is chosen.
++ * The default range is IPPORT_RESERVED through
++ * IPPORT_USERRESERVED, although that is settable by sysctl.
++ *
++ * A user may set the IPPROTO_IP option IP_PORTRANGE to change this
++ * default assignment range.
++ *
++ * The value IP_PORTRANGE_DEFAULT causes the default behavior.
++ *
++ * The value IP_PORTRANGE_HIGH changes the range of candidate port numbers
++ * into the "high" range.  These are reserved for client outbound connections
++ * which do not want to be filtered by any firewalls.
++ *
++ * The value IP_PORTRANGE_LOW changes the range to the "low" are
++ * that is (by convention) restricted to privileged processes.  This
++ * convention is based on "vouchsafe" principles only.  It is only secure
++ * if you trust the remote host to restrict these ports.
++ *
++ * The default range of ports and the high range can be changed by
++ * sysctl(3).  (net.inet.ip.port{hi,low}{first,last}_auto)
++ *
++ * Changing those values has bad security implications if you are
++ * using a a stateless firewall that is allowing packets outside of that
++ * range in order to allow transparent outgoing connections.
++ *
++ * Such a firewall configuration will generally depend on the use of these
++ * default values.  If you change them, you may find your Security
++ * Administrator looking for you with a heavy object.
++ *
++ * For a slightly more orthodox text view on this:
++ *
++ *            ftp://ftp.isi.edu/in-notes/iana/assignments/port-numbers
++ *
++ *    port numbers are divided into three ranges:
++ *
++ *                0 -  1023 Well Known Ports
++ *             1024 - 49151 Registered Ports
++ *            49152 - 65535 Dynamic and/or Private Ports
++ *
++ */
++
++/*
++ * Ports < IPPORT_RESERVED are reserved for
++ * privileged processes (e.g. root).         (IP_PORTRANGE_LOW)
++ * Ports > IPPORT_USERRESERVED are reserved
++ * for servers, not necessarily privileged.  (IP_PORTRANGE_DEFAULT)
++ */
++#define	IPPORT_RESERVED		1024
++#define	IPPORT_USERRESERVED	5000
++
++/*
++ * Default local port range to use by setting IP_PORTRANGE_HIGH
++ */
++#define	IPPORT_HIFIRSTAUTO	49152
++#define	IPPORT_HILASTAUTO	65535
++
++/*
++ * Scanning for a free reserved port return a value below IPPORT_RESERVED,
++ * but higher than IPPORT_RESERVEDSTART.  Traditionally the start value was
++ * 512, but that conflicts with some well-known-services that firewalls may
++ * have a fit if we use.
++ */
++#define IPPORT_RESERVEDSTART	600
++
++/*
++ * Internet address (a structure for historical reasons)
++ */
++struct in_addr {
++	in_addr_t s_addr;
++};
++
++/*
++ * Definitions of bits in internet address integers.
++ * On subnets, the decomposition of addresses to host and net parts
++ * is done according to subnet mask, not the masks here.
++ */
++#define	IN_CLASSA(i)		(((u_int32_t)(i) & 0x80000000) == 0)
++#define	IN_CLASSA_NET		0xff000000
++#define	IN_CLASSA_NSHIFT	24
++#define	IN_CLASSA_HOST		0x00ffffff
++#define	IN_CLASSA_MAX		128
++
++#define	IN_CLASSB(i)		(((u_int32_t)(i) & 0xc0000000) == 0x80000000)
++#define	IN_CLASSB_NET		0xffff0000
++#define	IN_CLASSB_NSHIFT	16
++#define	IN_CLASSB_HOST		0x0000ffff
++#define	IN_CLASSB_MAX		65536
++
++#define	IN_CLASSC(i)		(((u_int32_t)(i) & 0xe0000000) == 0xc0000000)
++#define	IN_CLASSC_NET		0xffffff00
++#define	IN_CLASSC_NSHIFT	8
++#define	IN_CLASSC_HOST		0x000000ff
++
++#define	IN_CLASSD(i)		(((u_int32_t)(i) & 0xf0000000) == 0xe0000000)
++#define	IN_CLASSD_NET		0xf0000000	/* These ones aren't really */
++#define	IN_CLASSD_NSHIFT	28		/* net and host fields, but */
++#define	IN_CLASSD_HOST		0x0fffffff	/* routing needn't know.    */
++#define	IN_MULTICAST(i)		IN_CLASSD(i)
++
++#define	IN_EXPERIMENTAL(i)	(((u_int32_t)(i) & 0xf0000000) == 0xf0000000)
++#define	IN_BADCLASS(i)		(((u_int32_t)(i) & 0xf0000000) == 0xf0000000)
++
++#define	INADDR_ANY		(u_int32_t)0x00000000
++#define	INADDR_LOOPBACK		(u_int32_t)0x7f000001
++#define	INADDR_BROADCAST	(u_int32_t)0xffffffff	/* must be masked */
++#ifndef _KERNEL
++#define	INADDR_NONE		0xffffffff		/* -1 return */
++#endif
++
++#define	INADDR_UNSPEC_GROUP	(u_int32_t)0xe0000000	/* 224.0.0.0 */
++#define	INADDR_ALLHOSTS_GROUP	(u_int32_t)0xe0000001	/* 224.0.0.1 */
++#define	INADDR_ALLRTRS_GROUP	(u_int32_t)0xe0000002	/* 224.0.0.2 */
++#define	INADDR_MAX_LOCAL_GROUP	(u_int32_t)0xe00000ff	/* 224.0.0.255 */
++
++#define	IN_LOOPBACKNET		127			/* official! */
++
++/*
++ * Socket address, internet style.
++ */
++struct sockaddr_in {
++	u_char	sin_len;
++	u_char	sin_family;
++	u_short	sin_port;
++	struct	in_addr sin_addr;
++	char	sin_zero[8];
++};
++
++#define	INET_ADDRSTRLEN                 16
++
++/*
++ * Options for use with [gs]etsockopt at the IP level.
++ * First word of comment is data type; bool is stored in int.
++ */
++#define	IP_OPTIONS		1    /* buf/ip_opts; set/get IP options */
++#define	IP_HDRINCL		2    /* int; header is included with data */
++#define	IP_TOS			3    /* int; IP type of service and preced. */
++#define	IP_TTL			4    /* int; IP time to live */
++#define	IP_RECVOPTS		5    /* bool; receive all IP opts w/dgram */
++#define	IP_RECVRETOPTS		6    /* bool; receive IP opts for response */
++#define	IP_RECVDSTADDR		7    /* bool; receive IP dst addr w/dgram */
++#define	IP_RETOPTS		8    /* ip_opts; set/get IP options */
++#define	IP_MULTICAST_IF		9    /* u_char; set/get IP multicast i/f  */
++#define	IP_MULTICAST_TTL	10   /* u_char; set/get IP multicast ttl */
++#define	IP_MULTICAST_LOOP	11   /* u_char; set/get IP multicast loopback */
++#define	IP_ADD_MEMBERSHIP	12   /* ip_mreq; add an IP group membership */
++#define	IP_DROP_MEMBERSHIP	13   /* ip_mreq; drop an IP group membership */
++#define IP_MULTICAST_VIF	14   /* set/get IP mcast virt. iface */
++#define IP_RSVP_ON		15   /* enable RSVP in kernel */
++#define IP_RSVP_OFF		16   /* disable RSVP in kernel */
++#define IP_RSVP_VIF_ON		17   /* set RSVP per-vif socket */
++#define IP_RSVP_VIF_OFF		18   /* unset RSVP per-vif socket */
++#define IP_PORTRANGE		19   /* int; range to choose for unspec port */
++#define	IP_RECVIF		20   /* bool; receive reception if w/dgram */
++/* for IPSEC */
++#define	IP_IPSEC_POLICY		21   /* int; set/get security policy */
++#define	IP_FAITH		22   /* bool; accept FAITH'ed connections */
++
++#define	IP_ONESBCAST		23   /* bool: send all-ones broadcast */
++
++#define	IP_FW_TABLE_ADD		40   /* add entry */
++#define	IP_FW_TABLE_DEL		41   /* delete entry */
++#define	IP_FW_TABLE_FLUSH	42   /* flush table */
++#define	IP_FW_TABLE_GETSIZE	43   /* get table size */
++#define	IP_FW_TABLE_LIST	44   /* list table contents */
++
++#define	IP_FW_ADD     		50   /* add a firewall rule to chain */
++#define	IP_FW_DEL    		51   /* delete a firewall rule from chain */
++#define	IP_FW_FLUSH   		52   /* flush firewall rule chain */
++#define	IP_FW_ZERO    		53   /* clear single/all firewall counter(s) */
++#define	IP_FW_GET     		54   /* get entire firewall rule chain */
++#define	IP_FW_RESETLOG		55   /* reset logging counters */
++
++#define	IP_DUMMYNET_CONFIGURE	60   /* add/configure a dummynet pipe */
++#define	IP_DUMMYNET_DEL		61   /* delete a dummynet pipe from chain */
++#define	IP_DUMMYNET_FLUSH	62   /* flush dummynet */
++#define	IP_DUMMYNET_GET		64   /* get entire dummynet pipes */
++
++/*
++ * Defaults and limits for options
++ */
++#define	IP_DEFAULT_MULTICAST_TTL  1	/* normally limit m'casts to 1 hop  */
++#define	IP_DEFAULT_MULTICAST_LOOP 1	/* normally hear sends if a member  */
++#define	IP_MAX_MEMBERSHIPS	20	/* per socket */
++
++/*
++ * Argument structure for IP_ADD_MEMBERSHIP and IP_DROP_MEMBERSHIP.
++ */
++struct ip_mreq {
++	struct	in_addr imr_multiaddr;	/* IP multicast address of group */
++	struct	in_addr imr_interface;	/* local IP address of interface */
++};
++
++/*
++ * Argument for IP_PORTRANGE:
++ * - which range to search when port is unspecified at bind() or connect()
++ */
++#define	IP_PORTRANGE_DEFAULT	0	/* default range */
++#define	IP_PORTRANGE_HIGH	1	/* "high" - request firewall bypass */
++#define	IP_PORTRANGE_LOW	2	/* "low" - vouchsafe security */
++
++/*
++ * Definitions for inet sysctl operations.
++ *
++ * Third level is protocol number.
++ * Fourth level is desired variable within that protocol.
++ */
++#define	IPPROTO_MAXID	(IPPROTO_AH + 1)	/* don't list to IPPROTO_MAX */
++
++#define	CTL_IPPROTO_NAMES { \
++	{ "ip", CTLTYPE_NODE }, \
++	{ "icmp", CTLTYPE_NODE }, \
++	{ "igmp", CTLTYPE_NODE }, \
++	{ "ggp", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "tcp", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ "egp", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "pup", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "udp", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "idp", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "ipsec", CTLTYPE_NODE }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, { 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ 0, 0 }, \
++	{ "pim", CTLTYPE_NODE }, \
++}
++
++/*
++ * Names for IP sysctl objects
++ */
++#define	IPCTL_FORWARDING	1	/* act as router */
++#define	IPCTL_SENDREDIRECTS	2	/* may send redirects when forwarding */
++#define	IPCTL_DEFTTL		3	/* default TTL */
++#ifdef notyet
++#define	IPCTL_DEFMTU		4	/* default MTU */
++#endif
++#define IPCTL_RTEXPIRE		5	/* cloned route expiration time */
++#define IPCTL_RTMINEXPIRE	6	/* min value for expiration time */
++#define IPCTL_RTMAXCACHE	7	/* trigger level for dynamic expire */
++#define	IPCTL_SOURCEROUTE	8	/* may perform source routes */
++#define	IPCTL_DIRECTEDBROADCAST	9	/* may re-broadcast received packets */
++#define IPCTL_INTRQMAXLEN	10	/* max length of netisr queue */
++#define	IPCTL_INTRQDROPS	11	/* number of netisr q drops */
++#define	IPCTL_STATS		12	/* ipstat structure */
++#define	IPCTL_ACCEPTSOURCEROUTE	13	/* may accept source routed packets */
++#define	IPCTL_FASTFORWARDING	14	/* use fast IP forwarding code */
++#define	IPCTL_KEEPFAITH		15	/* FAITH IPv4->IPv6 translater ctl */
++#define	IPCTL_GIF_TTL		16	/* default TTL for gif encap packet */
++#define	IPCTL_MAXID		17
++
++#define	IPCTL_NAMES { \
++	{ 0, 0 }, \
++	{ "forwarding", CTLTYPE_INT }, \
++	{ "redirect", CTLTYPE_INT }, \
++	{ "ttl", CTLTYPE_INT }, \
++	{ "mtu", CTLTYPE_INT }, \
++	{ "rtexpire", CTLTYPE_INT }, \
++	{ "rtminexpire", CTLTYPE_INT }, \
++	{ "rtmaxcache", CTLTYPE_INT }, \
++	{ "sourceroute", CTLTYPE_INT }, \
++ 	{ "directed-broadcast", CTLTYPE_INT }, \
++	{ "intr-queue-maxlen", CTLTYPE_INT }, \
++	{ "intr-queue-drops", CTLTYPE_INT }, \
++	{ "stats", CTLTYPE_STRUCT }, \
++	{ "accept_sourceroute", CTLTYPE_INT }, \
++	{ "fastforwarding", CTLTYPE_INT }, \
++}
++
++#ifdef _KERNEL
++struct ifnet; struct mbuf;	/* forward declarations for Standard C */
++#endif
++
++/* INET6 stuff */
++#define	__KAME_NETINET_IN_H_INCLUDED_
++#include <netinet6/in6.h>
++#undef __KAME_NETINET_IN_H_INCLUDED_
++
++#ifdef _KERNEL
++
++int	 in_broadcast __P((struct in_addr, struct ifnet *));
++int	 in_canforward __P((struct in_addr));
++int	 in_cksum __P((struct mbuf *, int));
++int	 in_localaddr __P((struct in_addr));
++char 	*inet_ntoa __P((struct in_addr)); /* in libkern */
++
++int	prison_ip __P((struct proc *p, int flag, u_int32_t *ip));
++void	prison_remote_ip __P((struct proc *p, int flag, u_int32_t *ip));
++
++#define in_hosteq(s, t)	((s).s_addr == (t).s_addr)
++#define in_nullhost(x)	((x).s_addr == INADDR_ANY)
++
++#define satosin(sa)	((struct sockaddr_in *)(sa))
++#define sintosa(sin)	((struct sockaddr *)(sin))
++#define ifatoia(ifa)	((struct in_ifaddr *)(ifa))
++
++#endif
++
++#endif
diff --git a/graphics/raster3d/files/patch-Makefile b/graphics/raster3d/files/patch-Makefile
new file mode 100644
index 000000000000..74b2e617fcc7
--- /dev/null
+++ b/graphics/raster3d/files/patch-Makefile
@@ -0,0 +1,19 @@
+--- Makefile.orig	Wed Apr 12 19:46:10 2006
++++ Makefile	Fri Apr 28 02:48:06 2006
+@@ -156,6 +156,16 @@
+ 	@echo FFLAGS = \${CFLAGS}               >> Makefile.incl
+ 	@echo RM = /bin/rm -f                 >> Makefile.incl
+ 
++freebsd:	strip-for-g77
++	@cp Makefile.template Makefile.incl
++	@echo OS = freebsd                    >> Makefile.incl
++	@echo CC = ${CC}                      >> Makefile.incl
++	@echo CFLAGS = ${CFLAGS}              >> Makefile.incl
++	@echo FC = f77                        >> Makefile.incl
++	@echo FFLAGS = ${FFLAGS}              >> Makefile.incl
++	@echo RM = /bin/rm -f                 >> Makefile.incl
++	@echo OSDEFS =  -DLINUX -DNETWORKBYTEORDER       >> Makefile.incl
++	@echo include Makefile.package        >> Makefile.incl
+ 
+ strip-for-g77: render.f.bak normal3d.f.bak rastep.f.bak
+ render.f.bak:
diff --git a/graphics/raster3d/pkg-descr b/graphics/raster3d/pkg-descr
new file mode 100644
index 000000000000..d3b23e9438aa
--- /dev/null
+++ b/graphics/raster3d/pkg-descr
@@ -0,0 +1,17 @@
+Raster3D is a set of tools for generating high quality raster images of
+proteins or other molecules.
+
+The core program renders spheres, triangles, cylinders, and quadric
+surfaces with specular highlighting, Phong shading, and shadowing. It
+uses an efficient software Z-buffer algorithm which is independent of
+any graphics hardware.
+
+Ancillary programs process atomic coordinates from PDB files into
+rendering descriptions for pictures composed of ribbons, space-filling
+atoms, bonds, ball+stick, etc.
+
+Raster3D can also be used to render pictures composed in other programs
+such as Molscript in glorious 3D with highlights, shadowing, etc. Output
+is to pixel image files with 24 bits of color information per pixel.
+
+WWW: http://skuld.bmsc.washington.edu/raster3d/
diff --git a/graphics/raster3d/pkg-plist b/graphics/raster3d/pkg-plist
new file mode 100644
index 000000000000..b082e38aaf59
--- /dev/null
+++ b/graphics/raster3d/pkg-plist
@@ -0,0 +1,157 @@
+bin/avs2ps
+bin/balls
+bin/rastep
+bin/render
+bin/ribbon
+bin/rings3d
+bin/rods
+bin/normal3d
+%%IMAGEMAGICK%%bin/label3d
+%%IMAGEMAGICK%%bin/stereo3d
+%%PORTDOCS%%%%DOCSDIR%%/html/README
+%%PORTDOCS%%%%DOCSDIR%%/html/avs2ps.html
+%%PORTDOCS%%%%DOCSDIR%%/html/balls.html
+%%PORTDOCS%%%%DOCSDIR%%/html/index_button.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/label3d.html
+%%PORTDOCS%%%%DOCSDIR%%/html/normal3d.html
+%%PORTDOCS%%%%DOCSDIR%%/html/pdb_anisou.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_animation.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_colorpicker.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_colorpicker.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_colors.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_docbkg.jpg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_docstyle.css
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example1.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example2.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example5.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example6.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example6.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example7.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example8.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_example9.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_examples.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_filters.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_hints.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_icon.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_labels.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_msms.png
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_obj15.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_obj19.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_stereo7.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/r3d_transparent.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3dtops.html
+%%PORTDOCS%%%%DOCSDIR%%/html/r3dtops_tex1.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3dtops_tex2.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/r3dtops_tex3.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/rastep.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rastep_options.gif
+%%PORTDOCS%%%%DOCSDIR%%/html/raster3d.html
+%%PORTDOCS%%%%DOCSDIR%%/html/render.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rgb_black.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/rgb_white.jpeg
+%%PORTDOCS%%%%DOCSDIR%%/html/rgbmap_black.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rgbmap_white.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rgbtext.html
+%%PORTDOCS%%%%DOCSDIR%%/html/ribbon.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rings3d.html
+%%PORTDOCS%%%%DOCSDIR%%/html/rods.html
+%%PORTDOCS%%%%DOCSDIR%%/html/stereo3d.html
+%%PORTDOCS%%%%DOCSDIR%%/R3D_manual.pdf
+%%PORTDOCS%%%%EXAMPLESDIR%%/msms/README
+%%PORTDOCS%%%%EXAMPLESDIR%%/msms/msms2r3d.c
+%%PORTDOCS%%%%EXAMPLESDIR%%/msms/msms_example.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/LT.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/README.examples
+%%PORTDOCS%%%%EXAMPLESDIR%%/chaincolours.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/clip.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex5.jpeg
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex5_matrix.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex7_header.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex7_helix.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex7_labels.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex7_tex.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/ex7_titles.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example1.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example1.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example2.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example2.sgi
+%%PORTDOCS%%%%EXAMPLESDIR%%/example3.mol
+%%PORTDOCS%%%%EXAMPLESDIR%%/example3.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example3.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example4.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example5.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example5.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example6.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example6.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example7.jpeg
+%%PORTDOCS%%%%EXAMPLESDIR%%/example7.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/example7.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example8.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/example9.script
+%%PORTDOCS%%%%EXAMPLESDIR%%/gal_srf.r3d.gz
+%%PORTDOCS%%%%EXAMPLESDIR%%/header1.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/header2.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/header4.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/header8.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/plane.r3d
+%%PORTDOCS%%%%EXAMPLESDIR%%/sugarG.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/sugarcolours.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/sugars.pdb
+%%PORTDOCS%%%%EXAMPLESDIR%%/transparent.r3d
+%%DATADIR%%/materials/2-sided.r3d
+%%DATADIR%%/materials/backdrop_1.r3d
+%%DATADIR%%/materials/backdrop_2.r3d
+%%DATADIR%%/materials/backdrop_3.r3d
+%%DATADIR%%/materials/backface.r3d
+%%DATADIR%%/materials/basement.r3d
+%%DATADIR%%/materials/black.r3d
+%%DATADIR%%/materials/blue.r3d
+%%DATADIR%%/materials/bronze.r3d
+%%DATADIR%%/materials/brown.r3d
+%%DATADIR%%/materials/cpk.colours
+%%DATADIR%%/materials/cyan.r3d
+%%DATADIR%%/materials/darkblue.r3d
+%%DATADIR%%/materials/darkgreen.r3d
+%%DATADIR%%/materials/darkgrey.r3d
+%%DATADIR%%/materials/darkred.r3d
+%%DATADIR%%/materials/dna.colours
+%%DATADIR%%/materials/end_material.r3d
+%%DATADIR%%/materials/floor.r3d
+%%DATADIR%%/materials/fog.r3d
+%%DATADIR%%/materials/forestgreen.r3d
+%%DATADIR%%/materials/gold.r3d
+%%DATADIR%%/materials/green.r3d
+%%DATADIR%%/materials/grey.r3d
+%%DATADIR%%/materials/lightblue.r3d
+%%DATADIR%%/materials/lightgreen.r3d
+%%DATADIR%%/materials/lightgrey.r3d
+%%DATADIR%%/materials/lightorange.r3d
+%%DATADIR%%/materials/lightyellow.r3d
+%%DATADIR%%/materials/lilac.r3d
+%%DATADIR%%/materials/matte.r3d
+%%DATADIR%%/materials/moccasin.r3d
+%%DATADIR%%/materials/mycolors.pdb
+%%DATADIR%%/materials/orange.r3d
+%%DATADIR%%/materials/orchid.r3d
+%%DATADIR%%/materials/pearl.r3d
+%%DATADIR%%/materials/pink.r3d
+%%DATADIR%%/materials/purple.r3d
+%%DATADIR%%/materials/red.r3d
+%%DATADIR%%/materials/residue.colours
+%%DATADIR%%/materials/shapely.colours
+%%DATADIR%%/materials/silver.r3d
+%%DATADIR%%/materials/translucent.r3d
+%%DATADIR%%/materials/translucent_30.r3d
+%%DATADIR%%/materials/translucent_60.r3d
+%%DATADIR%%/materials/translucent_90.r3d
+%%DATADIR%%/materials/transparent.r3d
+%%DATADIR%%/materials/transparent0.r3d
+%%DATADIR%%/materials/transparent1.r3d
+%%DATADIR%%/materials/white.r3d
+%%DATADIR%%/materials/yellow.r3d
+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/msms
+%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
+%%PORTDOCS%%@dirrm %%DOCSDIR%%/html
+%%PORTDOCS%%@dirrm %%DOCSDIR%%
+@dirrm %%DATADIR%%/materials
+@dirrm %%DATADIR%%