Update to version 0.64.2

PR:		13375
Submitted by:	maintainer

3 files changed, 2234 insertions, 1629 deletions

diff --git a/math/R-project/Makefile b/math/R-project/Makefile
index 51bddb7d6ece..85d7324976c5 100644
--- a/math/R-project/Makefile
+++ b/math/R-project/Makefile
@@ -1,13 +1,13 @@
-# New ports collection makefile for:   R (letter)
-# Version required:    R-0.62.2
-# Date created:                Tue Jun 23 07:36:55 EST 1998
-# Whom:                        Maurice Castro <maurice@serc.rmit.edu.au>
+# New ports collection makefile for:	R (letter)
+# Version required:		R-0.64.2
+# Date created:			Tue Jun 23 07:36:55 EST 1998
+# Whom:				Maurice Castro <maurice@serc.rmit.edu.au>
 #
 # $FreeBSD$
 #
 
-DISTNAME=	R-0.62.2
-PKGNAME=	R-${PAPERSIZE}-0.62.2
+DISTNAME=	R-0.64.2
+PKGNAME=	R-${PAPERSIZE}-0.64.2
 CATEGORIES=	math
 MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
 		ftp://ftp.biostat.washington.edu/mirrors/R/CRAN/src/base/ \
@@ -38,27 +38,11 @@ PAPERSIZE?=	letter
 
 ALL_TARGET=all help html
 
-MAN1=	R.1 Rdconv.1
+MAN1=	R.1 Rd2txt.1 Rdconv.1
+MLINKS=	Rdconv.1 Sd2Rd.1 \
+	Rdconv.1 Rdindex.1
 
 test:
 	@(cd ${WRKSRC}; make test-All)
 
-do-install:
-	${INSTALL_MAN} ${WRKSRC}/R.1 ${PREFIX}/man/man1
-	${INSTALL_MAN} ${WRKSRC}/Rdconv.1 ${PREFIX}/man/man1
-	${SED} 's:PREFIX:${PREFIX}:;s:DEFAULTPAPER:${PAPERSIZE}:' ${FILESDIR}/R > ${PREFIX}/bin/R
-	(cd ${WRKSRC}; find . -type d -exec ${CHMOD} a+rx \{\} \; )
-	(cd ${WRKSRC}; find . -type f -exec ${CHMOD} a+r \{\} \; )
-	${CHMOD} a+x ${PREFIX}/bin/R
-	${MKDIR} ${PREFIX}/share/R
-	${MKDIR} ${PREFIX}/share/R/bin
-	${INSTALL_PROGRAM} ${WRKSRC}/bin/R.binary ${PREFIX}/share/R/bin
-	(cd ${WRKSRC}; tar cpf - afm ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - etc ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - doc ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - include ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - library ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - demos ) | (cd ${PREFIX}/share/R; tar xpf - )
-	(cd ${WRKSRC}; tar cpf - cmd ) | (cd ${PREFIX}/share/R; tar xpf - )
-
 .include <bsd.port.mk>
diff --git a/math/R-project/distinfo b/math/R-project/distinfo
index fe6ae1f6747b..d219cfcdbf3c 100644
--- a/math/R-project/distinfo
+++ b/math/R-project/distinfo
@@ -1 +1 @@
-MD5 (R-0.62.2.tgz) = 3e3359d8fcda053a7c2ebf06fc8ef550
+MD5 (R-0.64.2.tgz) = a25197e6ed875628de6bb9fc6ce34fe4
diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist
index 91f2aea0057a..1cde11b6aa73 100644
--- a/math/R-project/pkg-plist
+++ b/math/R-project/pkg-plist
@@ -1,1604 +1,2225 @@
-@exec mkdir %D/share/R
-@exec mkdir %D/share/R/afm
-@exec mkdir %D/share/R/bin
-@exec mkdir %D/share/R/cmd
-@exec mkdir %D/share/R/demos
-@exec mkdir %D/share/R/demos/dynload
-@exec mkdir %D/share/R/demos/graphics
-@exec mkdir %D/share/R/demos/language
-@exec mkdir %D/share/R/demos/models
-@exec mkdir %D/share/R/demos/nlm
-@exec mkdir %D/share/R/doc
-@exec mkdir %D/share/R/doc/html
-@exec mkdir %D/share/R/doc/html/search
-@exec mkdir %D/share/R/doc/manual
-@exec mkdir %D/share/R/etc
-@exec mkdir %D/share/R/etc/Rdoc
-@exec mkdir %D/share/R/etc/older-stuff
-@exec mkdir %D/share/R/etc/undoc
-@exec mkdir %D/share/R/include
-@exec mkdir %D/share/R/library
-@exec mkdir %D/share/R/library/base
-@exec mkdir %D/share/R/library/base/R
-@exec mkdir %D/share/R/library/base/data
-@exec mkdir %D/share/R/library/base/help
-@exec mkdir %D/share/R/library/base/html
-@exec mkdir %D/share/R/library/base/latex
-@exec mkdir %D/share/R/library/eda
-@exec mkdir %D/share/R/library/eda/R
-@exec mkdir %D/share/R/library/eda/help
-@exec mkdir %D/share/R/library/eda/html
-@exec mkdir %D/share/R/library/eda/latex
-@exec mkdir %D/share/R/library/eda/libs
-@exec mkdir %D/share/R/library/mva
-@exec mkdir %D/share/R/library/mva/R
-@exec mkdir %D/share/R/library/mva/help
-@exec mkdir %D/share/R/library/mva/html
-@exec mkdir %D/share/R/library/mva/latex
-@exec mkdir %D/share/R/library/mva/libs
-@exec mkdir %D/share/R/library/stepfun
-@exec mkdir %D/share/R/library/stepfun/R
-@exec mkdir %D/share/R/library/stepfun/help
-@exec mkdir %D/share/R/library/stepfun/html
-@exec mkdir %D/share/R/library/stepfun/latex
 bin/R
-share/R/afm/AvantB
-share/R/afm/AvantBO
-share/R/afm/AvantD
-share/R/afm/AvantDO
-share/R/afm/BookD
-share/R/afm/BookDI
-share/R/afm/BookL
-share/R/afm/BookLI
-share/R/afm/Cour
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-share/R/afm/Helv
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-share/R/afm/HelvNBO
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-share/R/afm/HelvO
-share/R/afm/Makefile
-share/R/afm/NCSchlB
-share/R/afm/NCSchlBI
-share/R/afm/NCSchlI
-share/R/afm/NCSchlR
-share/R/afm/PalatB
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-share/R/afm/TimesB
-share/R/afm/TimesBI
-share/R/afm/TimesI
-share/R/afm/TimesO
-share/R/afm/TimesR
-share/R/afm/ZapfCMI
-share/R/afm/ZapfD
-share/R/bin/R.binary
-share/R/cmd/filename
-share/R/cmd/fwf2table
-share/R/cmd/fwf2table.in
-share/R/cmd/help
-share/R/cmd/loadpath
-share/R/cmd/pager
-share/R/demos/Makefile
-share/R/demos/dynload/Makefile
-share/R/demos/dynload/Makefile.in
-share/R/demos/dynload/README
-share/R/demos/dynload/zero.R
-share/R/demos/dynload/zero.c
-share/R/demos/graphics/graphics.R
-share/R/demos/graphics/image.R
-share/R/demos/language/is-things.R
-share/R/demos/language/recursion.R
-share/R/demos/language/scoping.R
-share/R/demos/models/glm-v+r.R
-share/R/demos/models/lm+glm.R
-share/R/demos/nlm/valley.R
-share/R/doc/KEYWORDS
-share/R/doc/Makefile
-share/R/doc/keyword-test
-share/R/doc/keyword-test.in
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-share/R/doc/html/authors.html
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-share/R/doc/html/packages.html
-share/R/doc/html/resource.html
-share/R/doc/html/right.jpg
-share/R/doc/html/template.html
-share/R/doc/html/thanks.html
-share/R/doc/html/up.jpg
-share/R/doc/html/search/IndexEntry.class
-share/R/doc/html/search/IndexEntry.java
-share/R/doc/html/search/IndexStream.class
-share/R/doc/html/search/IndexStream.java
-share/R/doc/html/search/IndexTable.class
-share/R/doc/html/search/IndexTable.java
-share/R/doc/html/search/SearchEngine.class
-share/R/doc/html/search/SearchEngine.html
-share/R/doc/html/search/SearchEngine.java
-share/R/doc/html/search/Tracer.class
-share/R/doc/html/search/Tracer.java
-share/R/doc/html/search/Value.class
-share/R/doc/html/search/Value.java
-share/R/doc/html/search/index.txt
-share/R/doc/manual/ABOUT.tex
-share/R/doc/manual/EQN
-share/R/doc/manual/Makefile
-share/R/doc/manual/Man.tex
-share/R/doc/manual/Man0.tex
-share/R/doc/manual/Pkg-end.tex
-share/R/doc/manual/Pkg-start.tex
-share/R/doc/manual/Rd.sty
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-share/R/doc/manual/lib2tex.in
-share/R/doc/manual/plotmath.tex
-share/R/doc/manual/writing-Rd.tex
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-share/R/etc/older-stuff/extract-Examples
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