- update to 2.13.0

- switch to the bundled Rblas and Rlapack by default (this
  can be changed by setting BLAS and LAPACK) which favors
  correctness in some corner cases over a slight performance
  penalty; this will be revisited after the blas and lapack
  updates
- replace the STATIC_LIBR option with a LIBR option (on
  by default): if on, libR.a and libR.so are installed,
  and R is linked to libR.so. Otherwise, R is static, and
  no libRs are installed.
- remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1]
- enable the cairo and pango elements in the X11() graphics
  device by default, controlled by new PANGOCAIRO option
- add a few small patches to dependent ports, bumping
  PORTREVISION where necessary

PR:		153309 [1]
Approved by:	thierry (rkward*), wen (rpy*, R-cran-*)

4 files changed, 189 insertions, 67 deletions

diff --git a/math/R/Makefile b/math/R/Makefile
index 19c99a476812..156742dccc6d 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -7,7 +7,7 @@
 #
 
 PORTNAME?=	R
-PORTVERSION=	2.12.2
+PORTVERSION=	2.13.0
 CATEGORIES=	math lang
 MASTER_SITES=	http://cran.r-project.org/src/base/R-2/ \
 		ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -36,54 +36,74 @@ BUILD_WRKSRC=		${WRKSRC}/src/nmath/standalone
 CONFIGURE_ARGS =	--disable-nls --with-ICU=no --with-cairo=no --with-iconv=no \
 			--with-jpeglib=no --with-libpng=no --with-readline=no \
 			--with-tcltk=no --with-x=no --without-libintl-prefix
-USE_PERL5_BUILD=	yes
+PLIST_SUB=		RMATH_SOVERSION="${RMATH_SOVERSION}"
+USE_LDCONFIG=		yes
 .else # LIBRMATH_SLAVEPORT
 ALL_TARGET=		all
 CONFIGURE_ARGS =	--enable-memory-profiling rdocdir=${DOCSDIR} \
 			--with-system-bzlib --with-system-zlib
 CONFIGURE_ENV=		FCFLAGS="${FFLAGS}" \
 			INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" \
-			LDFLAGS="${LDFLAGS}"  \
 			R_LD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" TAR="${TAR}"
-INSTALL_TARGET=		install install-libR
 MAN1=		R.1 Rscript.1
 OPTIONS=	ATLAS		"Use ATLAS instead of BLAS/LAPACK" off \
 		GHOSTSCRIPT	"Enable the [dev2]bitmap() graphics devices" on \
 		ICU		"Improve collation in multibyte locales with ICU" on \
 		JPEG		"Enable the jpeg() graphics device" on \
 		LETTER_PAPER	"Use US Letter paper" off \
+		LIBR		"Install libR, and a dynamically-linked, rather than a static R" on \
 		NLS		"Build with NLS support" on \
+		PANGOCAIRO	"Enable cairo and pango in the X11() graphics device" on \
 		PCRE_PORT	"Use PCRE port instead of bundled source" on \
 		PNG		"Enable the png() graphics device" on \
-		STATIC_LIBR	"Build a static, rather than a shared, libR" off \
 		TCLTK		"Use Tcl/Tk (for the tcltk package)" on \
 		THREADS		"Build a multithreaded R" on \
 		X11		"Enable the X11() graphics device" on \
 		DVI_MANUALS	"Install DVI manuals (requires TeX)" off \
 		INFO_MANUALS	"Install GNU info manuals" on
-R_LD_LIBRARY_PATH=	${LOCALBASE}/lib/${_GCC_BUILD_DEPENDS}
+PLIST_SUB=		R_SOVERSION="${R_SOVERSION}" \
+			RBLAS_SOVERSION="${RBLAS_SOVERSION}" \
+			RLAPACK_SOVERSION="${RLAPACK_SOVERSION}"
+R_LD_LIBRARY_PATH=	${LOCALBASE}/lib/${_GCC_BUILD_DEPENDS}:${LOCALBASE}/lib
 USE_ICONV=		yes
-USE_PERL5=		yes
+USE_LDCONFIG=		${PREFIX}/lib/R/lib
+WANT_GNOME=		yes
 .endif # LIBRMATH_SLAVEPORT
+CONFIGURE_ENV +=	LDFLAGS="${LDFLAGS}"
 GNU_CONFIGURE=		yes
 MAKE_JOBS_UNSAFE=	yes
+R_SOVERSION=		0
+RBLAS_SOVERSION=	2
+RLAPACK_SOVERSION=	4
+RMATH_SOVERSION=	0
 USE_FORTRAN=		yes
-USE_LDCONFIG=		yes
+USE_PERL5_BUILD=	yes
 
 .include <bsd.port.pre.mk>
 
+.if ${ARCH} == "sparc64" || ${ARCH} == "powerpc64"
+PICFLAG?=		-fPIC
+.else
+PICFLAG?=		-fpic
+.endif
+.for flag in LD CXXLD
+CONFIGURE_ENV +=	SHLIB_${flag}FLAGS="${PICFLAG}"
+.endfor
+
 .if !defined(LIBRMATH_SLAVEPORT)
 .if defined(WITH_ATLAS)
 LIB_DEPENDS+=		atlas.2:${PORTSDIR}/math/atlas
-CONFIGURE_ARGS+=	--with-blas="-lf77blas -latlas"
-# A workaround to prevent hangs during the build.
-.if ${ARCH} != "i386"
-CONFIGURE_ARGS+=	--with-lapack="-lalapack -lcblas"
+BLAS?=			"-lf77blas -latlas"
+LAPACK?=		"-lalapack -lcblas"
+.else
+BLAS?=			no
+LAPACK?=		no
 .endif
+CONFIGURE_ARGS+=	--with-blas="${BLAS}" --with-lapack="${LAPACK}"
+.if ${BLAS} == "no" || ${LAPACK} == "no"
+PLIST_SUB+=		LAPACK=""
 .else
-LIB_DEPENDS+=		blas.2:${PORTSDIR}/math/blas \
-			lapack.4:${PORTSDIR}/math/lapack
-CONFIGURE_ARGS+=	--with-blas="-lblas" --with-lapack="-llapack -lblas"
+PLIST_SUB+=		LAPACK="@comment "
 .endif
 
 .if !defined(WITHOUT_GHOSTSCRIPT)
@@ -108,6 +128,13 @@ CONFIGURE_ARGS+=	--with-jpeglib
 CONFIGURE_ENV +=	R_PAPERSIZE=letter
 .endif
 
+.if defined(WITHOUT_LIBR)
+PLIST_SUB+=		LIBR="@comment "
+.else
+CONFIGURE_ARGS+=	--enable-R-shlib
+PLIST_SUB+=		LIBR=""
+.endif
+
 .if !defined(WITHOUT_NLS)
 USE_GETTEXT=		yes
 PLIST_SUB+=		NLS=""
@@ -116,6 +143,12 @@ CONFIGURE_ARGS+=	--disable-nls
 PLIST_SUB+=		NLS="@comment "
 .endif
 
+.if defined(WITHOUT_PANGOCAIRO)
+CONFIGURE_ARGS+=	--with-cairo=no
+.else
+USE_GNOME+=		pango
+.endif
+
 .if defined(WITHOUT_PCRE_PORT)
 CONFIGURE_ARGS+=	--without-system-pcre
 .else
@@ -130,14 +163,6 @@ LIB_DEPENDS+=		png.6:${PORTSDIR}/graphics/png
 CONFIGURE_ARGS+=	--with-libpng
 .endif
 
-.if defined(WITH_STATIC_LIBR)
-CONFIGURE_ARGS+=	--enable-R-static-lib
-PLIST_SUB+=		STATIC_LIBR="" SHARED_LIBR="@comment "
-.else
-CONFIGURE_ARGS+=	--enable-R-shlib
-PLIST_SUB+=		STATIC_LIBR="@comment " SHARED_LIBR=""
-.endif
-
 .if defined(WITHOUT_TCLTK)
 CONFIGURE_ARGS+=	--without-tcltk
 PLIST_SUB+=		TCLTK="@comment "
@@ -162,7 +187,7 @@ CONFIGURE_ARGS+=	--without-x
 PLIST_SUB+=		X11="@comment "
 .else
 CONFIGURE_ARGS+=	--with-x
-USE_XORG=		x11 xt
+USE_XORG=		x11 xmu xt
 PLIST_SUB+=		X11=""
 .endif
 
@@ -202,19 +227,31 @@ post-patch:
 	done)
 .endif
 
+.if defined(WITH_LIBR)
+post-build:
+	@(cd ${WRKSRC}/src/main; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
+	${MAKE_ARGS} libR.a)
+
+.endif
+
 check regression-test test: build
-	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
-	${MAKE_ARGS} check)
+	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+	LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} \
+	check)
 
 check-all: build
-	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
-	${MAKE_ARGS} check-all)
+	@(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+	LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} \
+	check-all)
 
 post-install:
-.if !defined(WITH_STATIC_LIBR)
-	${MV} ${PREFIX}/lib/libR.so ${PREFIX}/lib/libR.so.0
-	${LN} -sf ${PREFIX}/lib/libR.so.0 ${PREFIX}/lib/libR.so
+.if defined(WITH_LIBR)
+	@${INSTALL_LIB} ${WRKSRC}/src/main/libR.a ${PREFIX}/lib/R/lib
 .endif
+.for L in R Rblas Rlapack
+	@(cd ${PREFIX}/lib/R/lib; if [ -f lib${L}.so ] ; then \
+	${LN} -sf lib${L}.so lib${L}.so.${${L:U}_SOVERSION} ; fi)
+.endfor
 .if defined(WITH_INFO_MANUALS) && !defined(NOPORTDOCS)
 	@(cd ${WRKSRC}/doc/manual; \
 	for infofile in ${INFO}; do \
@@ -224,14 +261,16 @@ post-install:
 
 .else # !LIBRMATH_SLAVEPORT
 do-install:
-	${INSTALL_DATA} ${WRKSRC}/src/include/Rmath.h ${PREFIX}/include
-	${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.a ${PREFIX}/lib
-	${INSTALL_DATA} ${BUILD_WRKSRC}/libRmath.so ${PREFIX}/lib/libRmath.so.0
-	(cd ${PREFIX}/lib; ${LN} -sf libRmath.so.0 libRmath.so)
-
-test: install
-	@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${_MAKE_JOBS} \
-	${MAKE_ARGS} test && ${BUILD_WRKSRC}/test)
+	@${INSTALL_DATA} ${WRKSRC}/src/include/Rmath.h ${PREFIX}/include
+	@${INSTALL_LIB} ${BUILD_WRKSRC}/libRmath.a ${PREFIX}/lib
+	@${INSTALL_LIB} ${BUILD_WRKSRC}/libRmath.so \
+	${PREFIX}/lib/libRmath.so.${RMATH_SOVERSION}
+	@(cd ${PREFIX}/lib; ${LN} -sf libRmath.so.${RMATH_SOVERSION} libRmath.so)
+
+check regression-test test: build
+	@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} LANGUAGE=en \
+	LC_COLLATE=C LC_TIME=C ${MAKE} ${_MAKE_JOBS} ${MAKE_ARGS} test; \
+	${SETENV} LD_LIBRARY_PATH="${BUILD_WRKSRC}" ${BUILD_WRKSRC}/test)
 
 .endif # !LIBRMATH_SLAVEPORT
 
diff --git a/math/R/distinfo b/math/R/distinfo
index e52d0f652cee..c42183ae75b8 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,2 +1,2 @@
-SHA256 (R-2.12.2.tar.gz) = 869ac219844671e4139aa4ddf5a272c27e26b1250bc427af3877fb237a5a9dbb
-SIZE (R-2.12.2.tar.gz) = 21120720
+SHA256 (R-2.13.0.tar.gz) = 559213ff05a205b9d2ad7ac7abebf477fb87c1bb3f0b03febbff5aa6bd8ab811
+SIZE (R-2.13.0.tar.gz) = 21832899
diff --git a/math/R/files/patch-tests__reg-tests-1b.R b/math/R/files/patch-tests__reg-tests-1b.R
deleted file mode 100644
index b943f0215477..000000000000
--- a/math/R/files/patch-tests__reg-tests-1b.R
+++ /dev/null
@@ -1,19 +0,0 @@
---- tests/reg-tests-1b.R.orig	2010-12-22 03:50:30.000000000 -0500
-+++ tests/reg-tests-1b.R	2010-12-22 04:05:33.000000000 -0500
-@@ -1344,11 +1344,11 @@
- 
- ## found from fallback test in slam 0.1-15
- ## most likely indicates an inaedquate BLAS.
--x <- matrix(c(1, 0, NA, 1), 2, 2)
--y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
--(z <- tcrossprod(x, y))
--stopifnot(identical(z, x %*% t(y)))
--stopifnot(is.nan(log(0) %*% 0))
-+## x <- matrix(c(1, 0, NA, 1), 2, 2)
-+## y <- matrix(c(1, 0, 0, 2, 1, 0), 3, 2)
-+## (z <- tcrossprod(x, y))
-+## stopifnot(identical(z, x %*% t(y)))
-+## stopifnot(is.nan(log(0) %*% 0))
- ## depended on the BLAS in use: some (including the reference BLAS)
- ## had z[1,3] == 0 and log(0) %*% 0 as as.matrix(0).
- 
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 9fc43678d2f5..ee2310112424 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -43,7 +43,6 @@ lib/R/bin/Rdiff
 lib/R/bin/Rprof
 lib/R/bin/Rscript
 lib/R/bin/SHLIB
-lib/R/bin/Sd2Rd
 lib/R/bin/Stangle
 lib/R/bin/Sweave
 lib/R/bin/build
@@ -76,6 +75,7 @@ lib/R/include/R_ext/GraphicsDevice.h
 lib/R/include/R_ext/GraphicsEngine.h
 lib/R/include/R_ext/Lapack.h
 lib/R/include/R_ext/Linpack.h
+lib/R/include/R_ext/MathThreads.h
 lib/R/include/R_ext/Memory.h
 lib/R/include/R_ext/Parse.h
 lib/R/include/R_ext/Print.h
@@ -101,8 +101,13 @@ lib/R/include/Rinternals.h
 lib/R/include/Rmath.h
 lib/R/include/Rversion.h
 lib/R/include/S.h
-%%STATIC_LIBR%%lib/R/lib/libR.a
-%%SHARED_LIBR%%lib/R/lib/libR.so
+%%LIBR%%lib/R/lib/libR.a
+%%LIBR%%lib/R/lib/libR.so
+%%LIBR%%lib/R/lib/libR.so.%%R_SOVERSION%%
+%%LAPACK%%lib/R/lib/libRblas.so
+%%LAPACK%%lib/R/lib/libRblas.so.%%RBLAS_SOVERSION%%
+%%LAPACK%%lib/R/lib/libRlapack.so
+%%LAPACK%%lib/R/lib/libRlapack.so.%%RLAPACK_SOVERSION%%
 lib/R/library/KernSmooth/DESCRIPTION
 lib/R/library/KernSmooth/INDEX
 lib/R/library/KernSmooth/LICENCE
@@ -121,6 +126,7 @@ lib/R/library/KernSmooth/help/KernSmooth.rdx
 lib/R/library/KernSmooth/help/aliases.rds
 lib/R/library/KernSmooth/help/paths.rds
 lib/R/library/KernSmooth/html/00Index.html
+lib/R/library/KernSmooth/html/R.css
 lib/R/library/KernSmooth/libs/KernSmooth.so
 %%NLS%%lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo
 %%NLS%%lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo
@@ -148,6 +154,7 @@ lib/R/library/MASS/help/MASS.rdx
 lib/R/library/MASS/help/aliases.rds
 lib/R/library/MASS/help/paths.rds
 lib/R/library/MASS/html/00Index.html
+lib/R/library/MASS/html/R.css
 lib/R/library/MASS/libs/MASS.so
 %%NLS%%lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo
 %%NLS%%lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo
@@ -230,6 +237,7 @@ lib/R/library/Matrix/help/Matrix.rdx
 lib/R/library/Matrix/help/aliases.rds
 lib/R/library/Matrix/help/paths.rds
 lib/R/library/Matrix/html/00Index.html
+lib/R/library/Matrix/html/R.css
 lib/R/library/Matrix/include/Matrix.h
 lib/R/library/Matrix/include/Matrix_stubs.c
 lib/R/library/Matrix/include/cholmod.h
@@ -239,7 +247,6 @@ lib/R/library/Matrix/libs/Matrix.so
 %%NLS%%lib/R/library/Matrix/po/en@quot/LC_MESSAGES/Matrix.mo
 %%NLS%%lib/R/library/Matrix/po/en@quot/LC_MESSAGES/R-Matrix.mo
 lib/R/library/Matrix/test-tools.R
-lib/R/library/R.css
 lib/R/library/base/CITATION
 lib/R/library/base/DESCRIPTION
 lib/R/library/base/INDEX
@@ -252,6 +259,7 @@ lib/R/library/base/R/Rprofile
 lib/R/library/base/R/base
 lib/R/library/base/R/base.rdb
 lib/R/library/base/R/base.rdx
+lib/R/library/base/demo/error.catching.R
 lib/R/library/base/demo/is.things.R
 lib/R/library/base/demo/recursion.R
 lib/R/library/base/demo/scoping.R
@@ -261,6 +269,7 @@ lib/R/library/base/help/base.rdb
 lib/R/library/base/help/base.rdx
 lib/R/library/base/help/paths.rds
 lib/R/library/base/html/00Index.html
+lib/R/library/base/html/R.css
 %%NLS%%lib/R/library/base/po/de/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/base/po/en@quot/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/base/po/fr/LC_MESSAGES/R-base.mo
@@ -269,6 +278,7 @@ lib/R/library/base/html/00Index.html
 %%NLS%%lib/R/library/base/po/ko/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/base/po/pt_BR/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/base/po/ru/LC_MESSAGES/R-base.mo
+%%NLS%%lib/R/library/base/po/tr/LC_MESSAGES/R-base.mo
 %%NLS%%lib/R/library/base/po/zh_CN/LC_MESSAGES/R-base.mo
 lib/R/library/boot/CITATION
 lib/R/library/boot/DESCRIPTION
@@ -292,6 +302,7 @@ lib/R/library/boot/help/boot.rdb
 lib/R/library/boot/help/boot.rdx
 lib/R/library/boot/help/paths.rds
 lib/R/library/boot/html/00Index.html
+lib/R/library/boot/html/R.css
 %%NLS%%lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo
 %%NLS%%lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo
 %%NLS%%lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo
@@ -316,6 +327,7 @@ lib/R/library/class/help/class.rdb
 lib/R/library/class/help/class.rdx
 lib/R/library/class/help/paths.rds
 lib/R/library/class/html/00Index.html
+lib/R/library/class/html/R.css
 lib/R/library/class/libs/class.so
 %%NLS%%lib/R/library/class/po/de/LC_MESSAGES/R-class.mo
 %%NLS%%lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo
@@ -342,6 +354,7 @@ lib/R/library/cluster/help/cluster.rdb
 lib/R/library/cluster/help/cluster.rdx
 lib/R/library/cluster/help/paths.rds
 lib/R/library/cluster/html/00Index.html
+lib/R/library/cluster/html/R.css
 lib/R/library/cluster/libs/cluster.so
 lib/R/library/codetools/DESCRIPTION
 lib/R/library/codetools/INDEX
@@ -360,6 +373,32 @@ lib/R/library/codetools/help/codetools.rdb
 lib/R/library/codetools/help/codetools.rdx
 lib/R/library/codetools/help/paths.rds
 lib/R/library/codetools/html/00Index.html
+lib/R/library/codetools/html/R.css
+lib/R/library/compiler/DESCRIPTION
+lib/R/library/compiler/INDEX
+lib/R/library/compiler/Meta/Rd.rds
+lib/R/library/compiler/Meta/hsearch.rds
+lib/R/library/compiler/Meta/links.rds
+lib/R/library/compiler/Meta/nsInfo.rds
+lib/R/library/compiler/Meta/package.rds
+lib/R/library/compiler/NAMESPACE
+lib/R/library/compiler/R/compiler
+lib/R/library/compiler/R/compiler.rdb
+lib/R/library/compiler/R/compiler.rdx
+lib/R/library/compiler/help/AnIndex
+lib/R/library/compiler/help/aliases.rds
+lib/R/library/compiler/help/compiler.rdb
+lib/R/library/compiler/help/compiler.rdx
+lib/R/library/compiler/help/paths.rds
+lib/R/library/compiler/html/00Index.html
+lib/R/library/compiler/html/R.css
+%%NLS%%lib/R/library/compiler/po/de/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/en@quot/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/fr/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/ja/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/pt_BR/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/ru/LC_MESSAGES/R-compiler.mo
+%%NLS%%lib/R/library/compiler/po/zh_CN/LC_MESSAGES/R-compiler.mo
 lib/R/library/datasets/DESCRIPTION
 lib/R/library/datasets/INDEX
 lib/R/library/datasets/Meta/Rd.rds
@@ -378,6 +417,7 @@ lib/R/library/datasets/help/datasets.rdb
 lib/R/library/datasets/help/datasets.rdx
 lib/R/library/datasets/help/paths.rds
 lib/R/library/datasets/html/00Index.html
+lib/R/library/datasets/html/R.css
 lib/R/library/foreign/COPYING
 lib/R/library/foreign/DESCRIPTION
 lib/R/library/foreign/INDEX
@@ -400,6 +440,7 @@ lib/R/library/foreign/help/foreign.rdb
 lib/R/library/foreign/help/foreign.rdx
 lib/R/library/foreign/help/paths.rds
 lib/R/library/foreign/html/00Index.html
+lib/R/library/foreign/html/R.css
 lib/R/library/foreign/libs/foreign.so
 %%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/R-foreign.mo
 %%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/foreign.mo
@@ -531,6 +572,8 @@ lib/R/library/grDevices/help/grDevices.rdb
 lib/R/library/grDevices/help/grDevices.rdx
 lib/R/library/grDevices/help/paths.rds
 lib/R/library/grDevices/html/00Index.html
+lib/R/library/grDevices/html/R.css
+lib/R/library/grDevices/icc/srgb
 lib/R/library/grDevices/libs/grDevices.so
 %%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/R-grDevices.mo
 %%NLS%%lib/R/library/grDevices/po/de/LC_MESSAGES/grDevices.mo
@@ -576,6 +619,7 @@ lib/R/library/graphics/help/graphics.rdb
 lib/R/library/graphics/help/graphics.rdx
 lib/R/library/graphics/help/paths.rds
 lib/R/library/graphics/html/00Index.html
+lib/R/library/graphics/html/R.css
 %%NLS%%lib/R/library/graphics/po/de/LC_MESSAGES/R-graphics.mo
 %%NLS%%lib/R/library/graphics/po/en@quot/LC_MESSAGES/R-graphics.mo
 %%NLS%%lib/R/library/graphics/po/fr/LC_MESSAGES/R-graphics.mo
@@ -645,6 +689,7 @@ lib/R/library/grid/help/grid.rdb
 lib/R/library/grid/help/grid.rdx
 lib/R/library/grid/help/paths.rds
 lib/R/library/grid/html/00Index.html
+lib/R/library/grid/html/R.css
 lib/R/library/grid/libs/grid.so
 %%NLS%%lib/R/library/grid/po/de/LC_MESSAGES/R-grid.mo
 %%NLS%%lib/R/library/grid/po/de/LC_MESSAGES/grid.mo
@@ -692,6 +737,7 @@ lib/R/library/lattice/help/lattice.rdb
 lib/R/library/lattice/help/lattice.rdx
 lib/R/library/lattice/help/paths.rds
 lib/R/library/lattice/html/00Index.html
+lib/R/library/lattice/html/R.css
 lib/R/library/lattice/libs/lattice.so
 %%NLS%%lib/R/library/lattice/po/de/LC_MESSAGES/R-lattice.mo
 %%NLS%%lib/R/library/lattice/po/en@quot/LC_MESSAGES/R-lattice.mo
@@ -713,6 +759,7 @@ lib/R/library/methods/help/methods.rdb
 lib/R/library/methods/help/methods.rdx
 lib/R/library/methods/help/paths.rds
 lib/R/library/methods/html/00Index.html
+lib/R/library/methods/html/R.css
 lib/R/library/methods/libs/methods.so
 %%NLS%%lib/R/library/methods/po/de/LC_MESSAGES/R-methods.mo
 %%NLS%%lib/R/library/methods/po/de/LC_MESSAGES/methods.mo
@@ -750,6 +797,7 @@ lib/R/library/mgcv/help/mgcv.rdb
 lib/R/library/mgcv/help/mgcv.rdx
 lib/R/library/mgcv/help/paths.rds
 lib/R/library/mgcv/html/00Index.html
+lib/R/library/mgcv/html/R.css
 lib/R/library/mgcv/libs/mgcv.so
 lib/R/library/nlme/CITATION
 lib/R/library/nlme/COPYING
@@ -775,6 +823,7 @@ lib/R/library/nlme/help/nlme.rdb
 lib/R/library/nlme/help/nlme.rdx
 lib/R/library/nlme/help/paths.rds
 lib/R/library/nlme/html/00Index.html
+lib/R/library/nlme/html/R.css
 lib/R/library/nlme/libs/nlme.so
 lib/R/library/nlme/mlbook/README
 lib/R/library/nlme/mlbook/ch04.R
@@ -813,6 +862,7 @@ lib/R/library/nnet/help/nnet.rdb
 lib/R/library/nnet/help/nnet.rdx
 lib/R/library/nnet/help/paths.rds
 lib/R/library/nnet/html/00Index.html
+lib/R/library/nnet/html/R.css
 lib/R/library/nnet/libs/nnet.so
 %%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo
 %%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo
@@ -839,6 +889,7 @@ lib/R/library/rpart/help/paths.rds
 lib/R/library/rpart/help/rpart.rdb
 lib/R/library/rpart/help/rpart.rdx
 lib/R/library/rpart/html/00Index.html
+lib/R/library/rpart/html/R.css
 lib/R/library/rpart/libs/rpart.so
 %%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/R-rpart.mo
 %%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/rpart.mo
@@ -869,6 +920,7 @@ lib/R/library/spatial/help/paths.rds
 lib/R/library/spatial/help/spatial.rdb
 lib/R/library/spatial/help/spatial.rdx
 lib/R/library/spatial/html/00Index.html
+lib/R/library/spatial/html/R.css
 lib/R/library/spatial/libs/spatial.so
 %%NLS%%lib/R/library/spatial/po/de/LC_MESSAGES/R-spatial.mo
 %%NLS%%lib/R/library/spatial/po/en@quot/LC_MESSAGES/R-spatial.mo
@@ -914,6 +966,7 @@ lib/R/library/splines/help/paths.rds
 lib/R/library/splines/help/splines.rdb
 lib/R/library/splines/help/splines.rdx
 lib/R/library/splines/html/00Index.html
+lib/R/library/splines/html/R.css
 lib/R/library/splines/libs/splines.so
 %%NLS%%lib/R/library/splines/po/de/LC_MESSAGES/R-splines.mo
 %%NLS%%lib/R/library/splines/po/de/LC_MESSAGES/splines.mo
@@ -948,6 +1001,7 @@ lib/R/library/stats4/help/paths.rds
 lib/R/library/stats4/help/stats4.rdb
 lib/R/library/stats4/help/stats4.rdx
 lib/R/library/stats4/html/00Index.html
+lib/R/library/stats4/html/R.css
 %%NLS%%lib/R/library/stats4/po/de/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/stats4/po/en@quot/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/stats4/po/fr/LC_MESSAGES/R-stats4.mo
@@ -956,6 +1010,7 @@ lib/R/library/stats4/html/00Index.html
 %%NLS%%lib/R/library/stats4/po/ko/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/stats4/po/pt_BR/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/stats4/po/ru/LC_MESSAGES/R-stats4.mo
+%%NLS%%lib/R/library/stats4/po/tr/LC_MESSAGES/R-stats4.mo
 %%NLS%%lib/R/library/stats4/po/zh_CN/LC_MESSAGES/R-stats4.mo
 lib/R/library/stats/COPYRIGHTS.modreg
 lib/R/library/stats/DESCRIPTION
@@ -981,6 +1036,7 @@ lib/R/library/stats/help/paths.rds
 lib/R/library/stats/help/stats.rdb
 lib/R/library/stats/help/stats.rdx
 lib/R/library/stats/html/00Index.html
+lib/R/library/stats/html/R.css
 lib/R/library/stats/libs/stats.so
 %%NLS%%lib/R/library/stats/po/de/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/stats/po/de/LC_MESSAGES/stats.mo
@@ -998,6 +1054,7 @@ lib/R/library/stats/libs/stats.so
 %%NLS%%lib/R/library/stats/po/pt_BR/LC_MESSAGES/stats.mo
 %%NLS%%lib/R/library/stats/po/ru/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/stats/po/ru/LC_MESSAGES/stats.mo
+%%NLS%%lib/R/library/stats/po/tr/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/R-stats.mo
 %%NLS%%lib/R/library/stats/po/zh_CN/LC_MESSAGES/stats.mo
 lib/R/library/survival/COPYING
@@ -1025,6 +1082,7 @@ lib/R/library/survival/help/paths.rds
 lib/R/library/survival/help/survival.rdb
 lib/R/library/survival/help/survival.rdx
 lib/R/library/survival/html/00Index.html
+lib/R/library/survival/html/R.css
 lib/R/library/survival/libs/survival.so
 lib/R/library/tcltk/DESCRIPTION
 lib/R/library/tcltk/INDEX
@@ -1060,6 +1118,7 @@ lib/R/library/tcltk/help/paths.rds
 lib/R/library/tcltk/help/tcltk.rdb
 lib/R/library/tcltk/help/tcltk.rdx
 lib/R/library/tcltk/html/00Index.html
+lib/R/library/tcltk/html/R.css
 %%TCLTK%%lib/R/library/tcltk/libs/tcltk.so
 %%NLS%%lib/R/library/tcltk/po/de/LC_MESSAGES/R-tcltk.mo
 %%NLS%%lib/R/library/tcltk/po/de/LC_MESSAGES/tcltk.mo
@@ -1094,6 +1153,7 @@ lib/R/library/tools/help/paths.rds
 lib/R/library/tools/help/tools.rdb
 lib/R/library/tools/help/tools.rdx
 lib/R/library/tools/html/00Index.html
+lib/R/library/tools/html/R.css
 lib/R/library/tools/libs/tools.so
 %%NLS%%lib/R/library/tools/po/de/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/tools/po/de/LC_MESSAGES/tools.mo
@@ -1111,6 +1171,7 @@ lib/R/library/tools/libs/tools.so
 %%NLS%%lib/R/library/tools/po/pt_BR/LC_MESSAGES/tools.mo
 %%NLS%%lib/R/library/tools/po/ru/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/tools/po/ru/LC_MESSAGES/tools.mo
+%%NLS%%lib/R/library/tools/po/tr/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/tools/po/zh_CN/LC_MESSAGES/R-tools.mo
 %%NLS%%lib/R/library/tools/po/zh_CN/LC_MESSAGES/tools.mo
 lib/R/library/utils/DESCRIPTION
@@ -1120,17 +1181,24 @@ lib/R/library/utils/Meta/hsearch.rds
 lib/R/library/utils/Meta/links.rds
 lib/R/library/utils/Meta/nsInfo.rds
 lib/R/library/utils/Meta/package.rds
+lib/R/library/utils/Meta/vignette.rds
 lib/R/library/utils/NAMESPACE
 lib/R/library/utils/R/utils
 lib/R/library/utils/R/utils.rdb
 lib/R/library/utils/R/utils.rdx
 lib/R/library/utils/Sweave/Sweave-test-1.Rnw
+lib/R/library/utils/Sweave/example-1.Rnw
+lib/R/library/utils/doc/Sweave.R
+lib/R/library/utils/doc/Sweave.Rnw
+lib/R/library/utils/doc/Sweave.pdf
+lib/R/library/utils/doc/index.html
 lib/R/library/utils/help/AnIndex
 lib/R/library/utils/help/aliases.rds
 lib/R/library/utils/help/paths.rds
 lib/R/library/utils/help/utils.rdb
 lib/R/library/utils/help/utils.rdx
 lib/R/library/utils/html/00Index.html
+lib/R/library/utils/html/R.css
 lib/R/library/utils/iconvlist
 lib/R/library/utils/misc/exDIF.csv
 lib/R/library/utils/misc/exDIF.dif
@@ -1141,6 +1209,7 @@ lib/R/library/utils/misc/exDIF.dif
 %%NLS%%lib/R/library/utils/po/ko/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/utils/po/pt_BR/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/utils/po/ru/LC_MESSAGES/R-utils.mo
+%%NLS%%lib/R/library/utils/po/tr/LC_MESSAGES/R-utils.mo
 %%NLS%%lib/R/library/utils/po/zh_CN/LC_MESSAGES/R-utils.mo
 %%X11%%lib/R/modules/R_X11.so
 lib/R/modules/internet.so
@@ -1176,6 +1245,7 @@ lib/R/share/licenses/license.db
 %%NLS%%lib/R/share/locale/nn/LC_MESSAGES/R.mo
 %%NLS%%lib/R/share/locale/pt_BR/LC_MESSAGES/R.mo
 %%NLS%%lib/R/share/locale/ru/LC_MESSAGES/R.mo
+%%NLS%%lib/R/share/locale/tr/LC_MESSAGES/R.mo
 %%NLS%%lib/R/share/locale/zh_CN/LC_MESSAGES/R.mo
 %%NLS%%lib/R/share/locale/zh_TW/LC_MESSAGES/R.mo
 lib/R/share/make/basepkg.mk
@@ -1198,9 +1268,7 @@ lib/R/share/texmf/tex/latex/omscmtt.fd
 lib/R/share/texmf/tex/latex/ts1aer.fd
 lib/R/share/texmf/tex/latex/ts1aett.fd
 lib/R/share/texmf/tex/latex/upquote.sty
-libdata/pkgconfig/libR.pc
-%%SHARED_LIBR%%lib/libR.so
-%%SHARED_LIBR%%lib/libR.so.0
+%%LIBR%%libdata/pkgconfig/libR.pc
 %%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-FAQ.dvi
 %%DOCSDIR%%/manual/R-FAQ.html
 %%PORTDOCS%%%%DVI_MANUAL%%%%DOCSDIR%%/manual/R-admin.dvi
@@ -1234,6 +1302,8 @@ libdata/pkgconfig/libR.pc
 %%NLS%%@dirrm lib/R/share/locale/zh_TW
 %%NLS%%@dirrm lib/R/share/locale/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/share/locale/zh_CN
+%%NLS%%@dirrm lib/R/share/locale/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/share/locale/tr
 %%NLS%%@dirrm lib/R/share/locale/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/share/locale/ru
 %%NLS%%@dirrm lib/R/share/locale/pt_BR/LC_MESSAGES
@@ -1267,6 +1337,8 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/modules
 %%NLS%%@dirrm lib/R/library/utils/po/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/utils/po/zh_CN
+%%NLS%%@dirrm lib/R/library/utils/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/utils/po/tr
 %%NLS%%@dirrm lib/R/library/utils/po/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/utils/po/ru
 %%NLS%%@dirrm lib/R/library/utils/po/pt_BR/LC_MESSAGES
@@ -1285,12 +1357,15 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/library/utils/misc
 @dirrm lib/R/library/utils/html
 @dirrm lib/R/library/utils/help
+@dirrm lib/R/library/utils/doc
 @dirrm lib/R/library/utils/Sweave
 @dirrm lib/R/library/utils/R
 @dirrm lib/R/library/utils/Meta
 @dirrm lib/R/library/utils
 %%NLS%%@dirrm lib/R/library/tools/po/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/tools/po/zh_CN
+%%NLS%%@dirrm lib/R/library/tools/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/tools/po/tr
 %%NLS%%@dirrm lib/R/library/tools/po/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/tools/po/ru
 %%NLS%%@dirrm lib/R/library/tools/po/pt_BR/LC_MESSAGES
@@ -1351,6 +1426,8 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/library/survival
 %%NLS%%@dirrm lib/R/library/stats/po/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/stats/po/zh_CN
+%%NLS%%@dirrm lib/R/library/stats/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/stats/po/tr
 %%NLS%%@dirrm lib/R/library/stats/po/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/stats/po/ru
 %%NLS%%@dirrm lib/R/library/stats/po/pt_BR/LC_MESSAGES
@@ -1376,6 +1453,8 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/library/stats/Meta
 %%NLS%%@dirrm lib/R/library/stats4/po/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/stats4/po/zh_CN
+%%NLS%%@dirrm lib/R/library/stats4/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/stats4/po/tr
 %%NLS%%@dirrm lib/R/library/stats4/po/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/stats4/po/ru
 %%NLS%%@dirrm lib/R/library/stats4/po/pt_BR/LC_MESSAGES
@@ -1599,6 +1678,7 @@ libdata/pkgconfig/libR.pc
 %%NLS%%@dirrm lib/R/library/grDevices/po/de
 %%NLS%%@dirrm lib/R/library/grDevices/po
 @dirrm lib/R/library/grDevices/libs
+@dirrm lib/R/library/grDevices/icc
 @dirrm lib/R/library/grDevices/html
 @dirrm lib/R/library/grDevices/help
 @dirrm lib/R/library/grDevices/enc
@@ -1626,6 +1706,26 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/library/datasets/R
 @dirrm lib/R/library/datasets/Meta
 @dirrm lib/R/library/datasets
+%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/zh_CN
+%%NLS%%@dirrm lib/R/library/compiler/po/ru/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/ru
+%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/pt_BR
+%%NLS%%@dirrm lib/R/library/compiler/po/ja/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/ja
+%%NLS%%@dirrm lib/R/library/compiler/po/fr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/fr
+%%NLS%%@dirrm lib/R/library/compiler/po/en@quot/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/en@quot
+%%NLS%%@dirrm lib/R/library/compiler/po/de/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/compiler/po/de
+%%NLS%%@dirrm lib/R/library/compiler/po
+@dirrm lib/R/library/compiler/html
+@dirrm lib/R/library/compiler/help
+@dirrm lib/R/library/compiler/R
+@dirrm lib/R/library/compiler/Meta
+@dirrm lib/R/library/compiler
 @dirrm lib/R/library/codetools/html
 @dirrm lib/R/library/codetools/help
 @dirrm lib/R/library/codetools/R
@@ -1668,6 +1768,8 @@ libdata/pkgconfig/libR.pc
 @dirrm lib/R/library/boot
 %%NLS%%@dirrm lib/R/library/base/po/zh_CN/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/base/po/zh_CN
+%%NLS%%@dirrm lib/R/library/base/po/tr/LC_MESSAGES
+%%NLS%%@dirrm lib/R/library/base/po/tr
 %%NLS%%@dirrm lib/R/library/base/po/ru/LC_MESSAGES
 %%NLS%%@dirrm lib/R/library/base/po/ru
 %%NLS%%@dirrm lib/R/library/base/po/pt_BR/LC_MESSAGES