- Update to 6.2.

7 files changed, 85 insertions, 62 deletions

diff --git a/math/sage/Makefile b/math/sage/Makefile
index dca9da0c32de..c0af9f7c896a 100644
--- a/math/sage/Makefile
+++ b/math/sage/Makefile
@@ -2,8 +2,7 @@
 # $FreeBSD$
 
 PORTNAME=	sage
-PORTVERSION=	6.1.1
-PORTREVISION=	1
+PORTVERSION=	6.2
 CATEGORIES=	math
 MASTER_SITES=	http://boxen.math.washington.edu/home/sagemath/sage-mirror/src/ \
 		http://mirrors.xmission.com/sage/src/ \
@@ -16,7 +15,9 @@ COMMENT=	Open source Mathematics software
 
 BUILD_DEPENDS=	bash:${PORTSDIR}/shells/bash \
 		convert:${PORTSDIR}/graphics/ImageMagick \
-		ffmpeg:${PORTSDIR}/multimedia/ffmpeg
+		ffmpeg:${PORTSDIR}/multimedia/ffmpeg \
+		automake:${PORTSDIR}/devel/automake \
+		autoconf:${PORTSDIR}/devel/autoconf
 LIB_DEPENDS=	libatlas.so:${PORTSDIR}/math/atlas \
 		liblapack.so:${PORTSDIR}/math/lapack \
 		libjpeg.so:${PORTSDIR}/graphics/jpeg
@@ -32,25 +33,11 @@ OPTIONS_DEFINE_amd64=	387
 
 pre-extract:
 	@${ECHO_MSG}
-	@${ECHO_MSG} \# The best way to build this port is to first type \"make build\".
-	@${ECHO_MSG} \# If you type \"make\" or \"make install\", this will cause the building of a
-	@${ECHO_MSG} \# package, which will take a considerable amount of time and space.
-	@${ECHO_MSG}
-	@${ECHO_MSG} \# After this, an easier way to install everything is to type:
-	@${ECHO_MSG}
-	@${ECHO_MSG} ${MV} ${WRKSRC} ${PREFIX}/.
-	@${ECHO_MSG}
-	@${ECHO_MSG} \# The next four lines are only needed if you want sage in ${PREFIX}/bin.
-	@${ECHO_MSG}
-	@${ECHO_MSG} "${SED} -e \"s+#SAGE_ROOT.*+SAGE_ROOT=${PREFIX}/${PORTNAME}-${PORTVERSION}+\" \\"
-	@${ECHO_MSG} "        ${PREFIX}/${PORTNAME}-${PORTVERSION}/sage > ${PREFIX}/bin/sage"
-	@${ECHO_MSG} ${CHOWN} ${BINOWN}:${BINGRP} ${PREFIX}/bin/sage
-	@${ECHO_MSG} ${CHMOD} ${BINMODE} ${PREFIX}/bin/sage
-	@${ECHO_MSG}
-	@${ECHO_MSG} \# The next line will provide write protection for sage.
-	@${ECHO_MSG} ${CHOWN} -hR ${BINOWN}:${BINGRP} ${PREFIX}/${PORTNAME}-${PORTVERSION}
-	@${ECHO_MSG}
-	@sleep 60
+	@${ECHO_MSG} Instead of installing the port, which will take a considerable amount of
+	@${ECHO_MSG} extra time and space, you can instead type \"make build\".  Then you can move
+	@${ECHO_MSG} work/${PORTNAME}-${PORTVERSION} to wherever you like, and run sage from there.
+	@${ECHO_MSG} However, there is no guarantee that this alternative will always work.
+	@sleep 10
 
 PLIST_FILES=	bin/sage
 USE_GCC=	yes
@@ -65,12 +52,6 @@ CXXFLAGS+=	-Wl,-rpath=${WRKSRC}/local/lib ${FPM_FLAG}
 # work-around for the make(1) idiosyncracy mentioned in PR 164361 (which
 # otherwise breaks the build of the maxima sub-package).
 
-USE_AUTOTOOLS=	autoconf
-run-autotools:
-		@${DO_NADA}
-do-configure:
-		@${DO_NADA}
-
 # Optimization flags will be defined by the source
 CFLAGS:=	${CFLAGS:C/^-O.*$//}
 FFLAGS:=	${CFLAGS:C/^-O.*$//}
diff --git a/math/sage/distinfo b/math/sage/distinfo
index 9b394742d3fb..f5a7dab6d0c4 100644
--- a/math/sage/distinfo
+++ b/math/sage/distinfo
@@ -1,2 +1,2 @@
-SHA256 (sage-6.1.1.tar.gz) = bee00adf232fbd4b256fae1aae5e9b52cb5c050b2d2337b624c31f9c28d07f4d
-SIZE (sage-6.1.1.tar.gz) = 398548682
+SHA256 (sage-6.2.tar.gz) = ca9759fd1d38f51f5187907782c73682cba7dec04d1f6aba6e502084ab4035bb
+SIZE (sage-6.2.tar.gz) = 424950536
diff --git a/math/sage/files/patch-build_pkgs_eclib_fbsd-patch-src_libsrc_eclib_interface.h b/math/sage/files/patch-build_pkgs_eclib_fbsd-patch-src_libsrc_eclib_interface.h
deleted file mode 100644
index 6d40c4ffe160..000000000000
--- a/math/sage/files/patch-build_pkgs_eclib_fbsd-patch-src_libsrc_eclib_interface.h
+++ /dev/null
@@ -1,13 +0,0 @@
---- /dev/null	2014-01-29 03:00:00.000000000 +0000
-+++ build/pkgs/eclib/fbsd-patch-src_libsrc_eclib_interface.h	2014-01-29 03:01:19.000000000 +0000
-@@ -0,0 +1,10 @@
-+--- src/libsrc/eclib/interface.h-orig	2013-04-26 23:46:24.000000000 +0000
-++++ src/libsrc/eclib/interface.h	2013-04-26 23:47:09.000000000 +0000
-+@@ -48,6 +48,7 @@
-+ #include <iterator>
-+ using namespace std;
-+ #include "templates.h"
-++#include <stdint.h>
-+ 
-+ #ifndef MININT
-+ #define MININT numeric_limits<int>::min()
diff --git a/math/sage/files/patch-build_pkgs_libgap_spkg-install b/math/sage/files/patch-build_pkgs_libgap_spkg-install
new file mode 100644
index 000000000000..b09183fe9ff9
--- /dev/null
+++ b/math/sage/files/patch-build_pkgs_libgap_spkg-install
@@ -0,0 +1,12 @@
+--- build/pkgs/libgap/spkg-install-orig	2014-05-15 02:28:13.000000000 +0000
++++ build/pkgs/libgap/spkg-install	2014-05-15 02:29:05.000000000 +0000
+@@ -42,6 +42,9 @@
+ done
+ 
+ echo "Configuring libGAP..."
++aclocal
++automake --add-missing
++autoconf
+ ./configure --disable-static \
+     CFLAGS="$CFLAGS" CXXFLAGS="$CXXFLAGS" CPPFLAGS="$CPPFLAGS" \
+     --with-gap_system_arch="$GAParch_system" \
diff --git a/math/sage/files/patch-build_pkgs_pynac_spkg-install b/math/sage/files/patch-build_pkgs_pynac_spkg-install
new file mode 100644
index 000000000000..7083a6145b18
--- /dev/null
+++ b/math/sage/files/patch-build_pkgs_pynac_spkg-install
@@ -0,0 +1,12 @@
+--- build/pkgs/pynac/spkg-install-orig	2014-05-15 02:26:11.000000000 +0000
++++ build/pkgs/pynac/spkg-install	2014-05-15 02:19:32.000000000 +0000
+@@ -33,6 +33,9 @@
+ {
+     cd ${PYNACDIR}
+     PKG_CONFIG_PATH=${SAGE_LOCAL}/lib/pkgconfig; export PKG_CONFIG_PATH
++    aclocal
++    automake --add-missing
++    autoconf
+     ./configure --disable-static --prefix=${SAGE_LOCAL} --libdir="$SAGE_LOCAL/lib"
+     $MAKE
+     if [ $? -ne 0 ]; then
diff --git a/math/sage/files/patch-src_doc_common_builder.py b/math/sage/files/patch-src_doc_common_builder.py
index 0c52e5a7b9a8..a37f2165929f 100644
--- a/math/sage/files/patch-src_doc_common_builder.py
+++ b/math/sage/files/patch-src_doc_common_builder.py
@@ -1,6 +1,6 @@
---- src/doc/common/builder.py-orig	2013-03-17 20:50:38.000000000 +0000
-+++ src/doc/common/builder.py	2013-03-17 20:56:42.000000000 +0000
-@@ -272,13 +272,16 @@
+--- src/doc/common/builder.py.orig	2014-05-06 11:21:42.000000000 +0000
++++ src/doc/common/builder.py	2014-05-15 21:18:06.000000000 +0000
+@@ -281,19 +281,22 @@
  
          # build the other documents in parallel
          from multiprocessing import Pool
@@ -9,38 +9,60 @@
          L = [(doc, name, kwds) + args for doc in others]
 -        # map_async handles KeyboardInterrupt correctly. Plain map and
 -        # apply_async does not, so don't use it.
--        pool.map_async(build_other_doc, L, 1).get(99999)
--        pool.close()
--        pool.join()
+-        x = pool.map_async(build_other_doc, L, 1)
+-        try:
+-            x.get(99999)
+-            pool.close()
+-            pool.join()
+-        except Exception:
+-            pool.terminate()
+-            if ABORT_ON_ERROR:
+-                raise
 +        # Pool doesn't work properly in FreeBSD.  Instead:
 +        for iii in L:
 +            build_other_doc(iii)
 +        # # map_async handles KeyboardInterrupt correctly. Plain map and
 +        # # apply_async does not, so don't use it.
-+        # pool.map_async(build_other_doc, L, 1).get(99999)
-+        # pool.close()
-+        # pool.join()
++        # x = pool.map_async(build_other_doc, L, 1)
++        # try:
++        #     x.get(99999)
++        #     pool.close()
++        #     pool.join()
++        # except Exception:
++        #     pool.terminate()
++        #     if ABORT_ON_ERROR:
++        #         raise
          logger.warning("Elapsed time: %.1f seconds."%(time.time()-start))
          logger.warning("Done building the documentation!")
  
-@@ -464,12 +467,15 @@
+@@ -479,18 +482,20 @@
                  continue
              output_dir = self._output_dir(format, lang)
              from multiprocessing import Pool
 -            pool = Pool(NUM_THREADS, maxtasksperchild=1)
 +            # pool = Pool(NUM_THREADS, maxtasksperchild=1)
              L = [(doc, lang, format, kwds) + args for doc in self.get_all_documents(refdir)]
--            # (See comment in AllBuilder._wrapper about using map instead of apply.)
--            pool.map_async(build_ref_doc, L, 1).get(99999)
--            pool.close()
--            pool.join()
-+            # Pool doesn't work properly in FreeBSD.  Instead:
+             # (See comment in AllBuilder._wrapper about using map instead of apply.)
+-            x = pool.map_async(build_ref_doc, L, 1)
+-            try:
+-                x.get(99999)
+-                pool.close()
+-                pool.join()
+-            except Exception:
+-                pool.terminate()
+-                if ABORT_ON_ERROR:
+-                    raise
 +            for iii in L:
 +                build_ref_doc(iii)
-+            # # (See comment in AllBuilder._wrapper about using map instead of apply.)
-+            # pool.map_async(build_ref_doc, L, 1).get(99999)
-+            # pool.close()
-+            # pool.join()
++            # x = pool.map_async(build_ref_doc, L, 1)
++            # try:
++            #     x.get(99999)
++            #     pool.close()
++            #     pool.join()
++            # except Exception:
++            #     pool.terminate()
++            #     if ABORT_ON_ERROR:
++            #         raise
              # The html refman must be build at the end to ensure correct
              # merging of indexes and inventories.
              # Sphinx is run here in the current process (not in a
diff --git a/math/sage/files/patch-src_doc_common_custom-sphinx-build.py b/math/sage/files/patch-src_doc_common_custom-sphinx-build.py
new file mode 100644
index 000000000000..2287b364da53
--- /dev/null
+++ b/math/sage/files/patch-src_doc_common_custom-sphinx-build.py
@@ -0,0 +1,9 @@
+--- src/doc/common/custom-sphinx-build.py-orig	2014-05-15 19:16:13.000000000 +0000
++++ src/doc/common/custom-sphinx-build.py	2014-05-15 19:17:11.000000000 +0000
+@@ -207,4 +207,5 @@
+ if ERROR_MESSAGE and ABORT_ON_ERROR:
+     sys.stdout.flush()
+     sys.stderr.flush()
+-    raise OSError(ERROR_MESSAGE)
++    # Comment out next line so that warnings don't stop doc build.
++    # raise OSError(ERROR_MESSAGE)