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authorbf <bf@FreeBSD.org>2011-10-11 22:19:46 +0800
committerbf <bf@FreeBSD.org>2011-10-11 22:19:46 +0800
commitd428de3f3c8db3e4354b8f7760bbde3e0c6f3def (patch)
treec60d3ea4c487ea5202753502ea882b4eb5b38f8d /math
parent6d5afc2870292e8071c961d1dfb6c8f56ecc4826 (diff)
downloadfreebsd-ports-gnome-d428de3f3c8db3e4354b8f7760bbde3e0c6f3def.tar.gz
freebsd-ports-gnome-d428de3f3c8db3e4354b8f7760bbde3e0c6f3def.tar.zst
freebsd-ports-gnome-d428de3f3c8db3e4354b8f7760bbde3e0c6f3def.zip
update math/R to 2.13.2, and adjust dependent ports
Diffstat (limited to 'math')
-rw-r--r--math/R-cran-RSvgDevice/Makefile2
-rw-r--r--math/R-cran-SuppDists/Makefile2
-rw-r--r--math/R-cran-Zelig/Makefile1
-rw-r--r--math/R-cran-car/Makefile2
-rw-r--r--math/R-cran-coda/Makefile1
-rw-r--r--math/R-cran-deldir/Makefile1
-rw-r--r--math/R-cran-gpclib/Makefile2
-rw-r--r--math/R-cran-inline/Makefile2
-rw-r--r--math/R-cran-mvtnorm/Makefile2
-rw-r--r--math/R-cran-psych/Makefile2
-rw-r--r--math/R-cran-sandwich/Makefile1
-rw-r--r--math/R-cran-sm/Makefile2
-rw-r--r--math/R-cran-sp/Makefile2
-rw-r--r--math/R-cran-spdep/Makefile1
-rw-r--r--math/R-cran-xts/Makefile1
-rw-r--r--math/R-cran-zoo/Makefile1
-rw-r--r--math/R/Makefile6
-rw-r--r--math/R/distinfo4
-rw-r--r--math/R/pkg-plist4
-rw-r--r--math/ess/Makefile2
-rw-r--r--math/p5-Statistics-R/Makefile1
-rw-r--r--math/rkward-kde4/Makefile2
-rw-r--r--math/rkward/Makefile2
-rw-r--r--math/rpy/Makefile2
-rw-r--r--math/rpy/pkg-plist2
-rw-r--r--math/rpy2/Makefile1
26 files changed, 28 insertions, 23 deletions
diff --git a/math/R-cran-RSvgDevice/Makefile b/math/R-cran-RSvgDevice/Makefile
index 6fad94cc2497..58c7783aff6b 100644
--- a/math/R-cran-RSvgDevice/Makefile
+++ b/math/R-cran-RSvgDevice/Makefile
@@ -7,7 +7,7 @@
PORTNAME= RSvgDevice
PORTVERSION= 0.6.4.1
-PORTREVISION= 8
+PORTREVISION= 9
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-SuppDists/Makefile b/math/R-cran-SuppDists/Makefile
index 04b8219ac070..5c03494e8614 100644
--- a/math/R-cran-SuppDists/Makefile
+++ b/math/R-cran-SuppDists/Makefile
@@ -7,7 +7,7 @@
PORTNAME= SuppDists
DISTVERSION= 1.1-8
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= ${MASTER_CRAN_SITES} \
http://r.research.att.com/benchmarks/:benchmark \
diff --git a/math/R-cran-Zelig/Makefile b/math/R-cran-Zelig/Makefile
index 7cd6cc194559..6744ff70369a 100644
--- a/math/R-cran-Zelig/Makefile
+++ b/math/R-cran-Zelig/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Zelig
DISTVERSION= 3.5.1
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-car/Makefile b/math/R-cran-car/Makefile
index aa22c92188ec..b8fc8031f35f 100644
--- a/math/R-cran-car/Makefile
+++ b/math/R-cran-car/Makefile
@@ -7,7 +7,7 @@
PORTNAME= car
DISTVERSION= 2.0-10
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-coda/Makefile b/math/R-cran-coda/Makefile
index c0ed4e15867a..224509c62552 100644
--- a/math/R-cran-coda/Makefile
+++ b/math/R-cran-coda/Makefile
@@ -7,6 +7,7 @@
PORTNAME= coda
DISTVERSION= 0.14-4
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-deldir/Makefile b/math/R-cran-deldir/Makefile
index 05a09664b112..781879bc4a4b 100644
--- a/math/R-cran-deldir/Makefile
+++ b/math/R-cran-deldir/Makefile
@@ -7,6 +7,7 @@
PORTNAME= deldir
DISTVERSION= 0.0-15
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-gpclib/Makefile b/math/R-cran-gpclib/Makefile
index b5fed9f82329..7240c63518cc 100644
--- a/math/R-cran-gpclib/Makefile
+++ b/math/R-cran-gpclib/Makefile
@@ -7,7 +7,7 @@
PORTNAME= gpclib
DISTVERSION= 1.5-1
-PORTREVISION= 4
+PORTREVISION= 5
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-inline/Makefile b/math/R-cran-inline/Makefile
index 492076852656..86fb30e9b3b9 100644
--- a/math/R-cran-inline/Makefile
+++ b/math/R-cran-inline/Makefile
@@ -7,7 +7,7 @@
PORTNAME= inline
PORTVERSION= 0.3.8
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION}
diff --git a/math/R-cran-mvtnorm/Makefile b/math/R-cran-mvtnorm/Makefile
index 79b9ce6f7c24..f198aeec6a78 100644
--- a/math/R-cran-mvtnorm/Makefile
+++ b/math/R-cran-mvtnorm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= mvtnorm
PORTVERSION= 0.9.96
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-psych/Makefile b/math/R-cran-psych/Makefile
index 647be092ad0e..8add0d50d412 100644
--- a/math/R-cran-psych/Makefile
+++ b/math/R-cran-psych/Makefile
@@ -7,7 +7,7 @@
PORTNAME= psych
PORTVERSION= 1.0.94
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math science
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-sandwich/Makefile b/math/R-cran-sandwich/Makefile
index eb81ffcb93f1..5489a09406ee 100644
--- a/math/R-cran-sandwich/Makefile
+++ b/math/R-cran-sandwich/Makefile
@@ -7,6 +7,7 @@
PORTNAME= sandwich
DISTVERSION= 2.2-8
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-sm/Makefile b/math/R-cran-sm/Makefile
index a20cf494c97c..ee51a38b3720 100644
--- a/math/R-cran-sm/Makefile
+++ b/math/R-cran-sm/Makefile
@@ -7,7 +7,7 @@
PORTNAME= sm
DISTVERSION= 2.2-4.1
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-sp/Makefile b/math/R-cran-sp/Makefile
index 42cac2c53fa1..873d598faf2b 100644
--- a/math/R-cran-sp/Makefile
+++ b/math/R-cran-sp/Makefile
@@ -7,7 +7,7 @@
PORTNAME= sp
PORTVERSION= 0.9.78
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${PORTVERSION:C/\./-/g:C/-/\./1}
diff --git a/math/R-cran-spdep/Makefile b/math/R-cran-spdep/Makefile
index 5456132e1907..e61cacb05ca5 100644
--- a/math/R-cran-spdep/Makefile
+++ b/math/R-cran-spdep/Makefile
@@ -7,6 +7,7 @@
PORTNAME= spdep
DISTVERSION= 0.5-40
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-xts/Makefile b/math/R-cran-xts/Makefile
index 7c3f062c54c4..4cb063a1b6c4 100644
--- a/math/R-cran-xts/Makefile
+++ b/math/R-cran-xts/Makefile
@@ -7,6 +7,7 @@
PORTNAME= xts
DISTVERSION= 0.8-2
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R-cran-zoo/Makefile b/math/R-cran-zoo/Makefile
index ce64dd07ff1a..33e709b8f346 100644
--- a/math/R-cran-zoo/Makefile
+++ b/math/R-cran-zoo/Makefile
@@ -7,6 +7,7 @@
PORTNAME= zoo
DISTVERSION= 1.7-4
+PORTREVISION= 1
CATEGORIES= math
PKGNAMEPREFIX= R-cran-
DISTNAME= ${PORTNAME}_${DISTVERSION}
diff --git a/math/R/Makefile b/math/R/Makefile
index 63d654930914..c1acd3721616 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -7,8 +7,7 @@
#
PORTNAME?= R
-PORTVERSION= 2.13.1
-PORTREVISION= 1
+PORTVERSION= 2.13.2
CATEGORIES= math lang
MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \
ftp://cran.r-project.org/pub/R/src/base/R-2/ \
@@ -50,7 +49,7 @@ CONFIGURE_ENV= FCFLAGS="${FFLAGS}" \
OPTIONS= ATLAS "Use ATLAS instead of BLAS/LAPACK" off \
ICU "Improve collation in multibyte locales with ICU" on \
NLS "Build with NLS support" on \
- PCRE_PORT "Use PCRE port instead of bundled source" off \
+ PCRE_PORT "Use PCRE port instead of bundled source" on \
THREADS "Build a multithreaded R" on
.if !defined(LIBR_SLAVEPORT)
OPTIONS+= GHOSTSCRIPT "Enable the [dev2]bitmap() graphics devices" on \
@@ -130,7 +129,6 @@ PLIST_SUB+= NLS="@comment "
.if defined(WITHOUT_PCRE_PORT)
CONFIGURE_ARGS+= --without-system-pcre
.else
-BROKEN = WITH_PCRE_PORT breaks document generation with pcre 8.13
LIB_DEPENDS+= pcre.0:${PORTSDIR}/devel/pcre
CONFIGURE_ARGS+= --with-system-pcre
.endif
diff --git a/math/R/distinfo b/math/R/distinfo
index 9a447e35ea5b..c8760986fb53 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1,2 +1,2 @@
-SHA256 (R-2.13.1.tar.gz) = ded5f39bc5130ff58a53d361435e0fee818ebec6c2aacc976ab625a3adf9bc51
-SIZE (R-2.13.1.tar.gz) = 22063747
+SHA256 (R-2.13.2.tar.gz) = a1c8733030636c86efa23f6f22dd673a0a54d0fedcffcc8c8deb03da8f972330
+SIZE (R-2.13.2.tar.gz) = 22161810
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 1e12c7f3bc09..6c01398017d4 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -416,7 +416,6 @@ lib/R/library/datasets/help/datasets.rdx
lib/R/library/datasets/help/paths.rds
lib/R/library/datasets/html/00Index.html
lib/R/library/datasets/html/R.css
-lib/R/library/foreign/COPYING
lib/R/library/foreign/DESCRIPTION
lib/R/library/foreign/INDEX
lib/R/library/foreign/LICENCE
@@ -707,9 +706,9 @@ lib/R/library/grid/libs/grid.so
%%NLS%%lib/R/library/grid/po/zh_CN/LC_MESSAGES/R-grid.mo
%%NLS%%lib/R/library/grid/po/zh_CN/LC_MESSAGES/grid.mo
lib/R/library/lattice/CITATION
-lib/R/library/lattice/COPYING
lib/R/library/lattice/DESCRIPTION
lib/R/library/lattice/INDEX
+lib/R/library/lattice/LICENSE
lib/R/library/lattice/Meta/Rd.rds
lib/R/library/lattice/Meta/data.rds
lib/R/library/lattice/Meta/demo.rds
@@ -798,7 +797,6 @@ lib/R/library/mgcv/html/00Index.html
lib/R/library/mgcv/html/R.css
lib/R/library/mgcv/libs/mgcv.so
lib/R/library/nlme/CITATION
-lib/R/library/nlme/COPYING
lib/R/library/nlme/DESCRIPTION
lib/R/library/nlme/INDEX
lib/R/library/nlme/LICENCE
diff --git a/math/ess/Makefile b/math/ess/Makefile
index d4e4210a88a4..8c27c8166184 100644
--- a/math/ess/Makefile
+++ b/math/ess/Makefile
@@ -7,7 +7,7 @@
PORTNAME= ess
PORTVERSION= 5.14
-PORTREVISION= 2
+PORTREVISION= 3
CATEGORIES= math
MASTER_SITES= http://ess.r-project.org/downloads/ess/
EXTRACT_SUFX= .tgz
diff --git a/math/p5-Statistics-R/Makefile b/math/p5-Statistics-R/Makefile
index be0f1ac8c68f..496e0b1ec3f9 100644
--- a/math/p5-Statistics-R/Makefile
+++ b/math/p5-Statistics-R/Makefile
@@ -7,6 +7,7 @@
PORTNAME= Statistics-R
PORTVERSION= 0.22
+PORTREVISION= 1
CATEGORIES= math perl5
MASTER_SITES= CPAN
MASTER_SITE_SUBDIR= CPAN:FANGLY
diff --git a/math/rkward-kde4/Makefile b/math/rkward-kde4/Makefile
index 66b82c8c787c..a3f4f8257d54 100644
--- a/math/rkward-kde4/Makefile
+++ b/math/rkward-kde4/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
PORTVERSION= 0.5.6
-PORTREVISION= 1
+PORTREVISION= 2
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Current_Stable_Releases
PKGNAMESUFFIX= -kde4
diff --git a/math/rkward/Makefile b/math/rkward/Makefile
index 9e8512a884bf..3a83073248cf 100644
--- a/math/rkward/Makefile
+++ b/math/rkward/Makefile
@@ -7,7 +7,7 @@
PORTNAME= rkward
DISTVERSION= 0.4.9a
-PORTREVISION= 11
+PORTREVISION= 12
PORTEPOCH= 3
CATEGORIES= math
MASTER_SITES= SF/${PORTNAME}/Historical_Releases/0.4.x_and_earlier/0.4.9a%20%28KDE3%29
diff --git a/math/rpy/Makefile b/math/rpy/Makefile
index 40da72a8e3ec..1de876b18568 100644
--- a/math/rpy/Makefile
+++ b/math/rpy/Makefile
@@ -8,7 +8,7 @@
PORTNAME= rpy
PORTVERSION= 1.0.3
-PORTREVISION= 18
+PORTREVISION= 19
CATEGORIES= math
MASTER_SITES= SF
diff --git a/math/rpy/pkg-plist b/math/rpy/pkg-plist
index 4c8898b44711..32e675dfbb7a 100644
--- a/math/rpy/pkg-plist
+++ b/math/rpy/pkg-plist
@@ -1,4 +1,4 @@
-%%PYTHON_SITELIBDIR%%/_rpy2131.so
+%%PYTHON_SITELIBDIR%%/_rpy2132.so
%%PYTHON_SITELIBDIR%%/rpy.py
%%PYTHON_SITELIBDIR%%/rpy.pyc
%%PYTHON_SITELIBDIR%%/rpy.pyo
diff --git a/math/rpy2/Makefile b/math/rpy2/Makefile
index 4fa2a11c12ba..a8a26caf00ee 100644
--- a/math/rpy2/Makefile
+++ b/math/rpy2/Makefile
@@ -8,6 +8,7 @@
PORTNAME= rpy2
PORTVERSION= 2.2.3
+PORTREVISION= 1
CATEGORIES= math
MASTER_SITES= CHEESESHOP \
SF