- Update to 1.0rc1

- Add options for ATLAS
- Fix ATLAS detection
- Use feclearexcept(3) rather than fpsetsticky(3) on 5.3+
- Add CONFLICTS for f2py. Both ports install bin/f2py

PR:		ports/103827
Submitted by:	Li-Lun Wang
Approved by:	maintainer timeout (6 weeks)

9 files changed, 678 insertions, 609 deletions

diff --git a/math/py-numpy/Makefile b/math/py-numpy/Makefile
index ef6c8cb0292d..56b3c038a052 100644
--- a/math/py-numpy/Makefile
+++ b/math/py-numpy/Makefile
@@ -6,27 +6,39 @@
 #
 
 PORTNAME=	numpy
-PORTVERSION=	1.0b3
+PORTVERSION=	1.0r1
 CATEGORIES=	math python
 MASTER_SITES=	http://numpy.scipy.org/:doc \
 		${MASTER_SITE_SOURCEFORGE:S/$/:source/}
 MASTER_SITE_SUBDIR=	numpy/:source
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
-DISTFILES=	numpy-${PORTVERSION}${EXTRACT_SUFX}:source \
+DISTFILES=	numpy-${PORTVERSION:S/r/rc/}${EXTRACT_SUFX}:source \
 		numpy.pdf:doc
-EXTRACT_ONLY=	numpy-${PORTVERSION}${EXTRACT_SUFX}
+EXTRACT_ONLY=	numpy-${PORTVERSION:S/r/rc/}${EXTRACT_SUFX}
 
 MAINTAINER=	tonymaher@optusnet.com.au
 COMMENT=	The New Numeric Extension to Python
 
-LIB_DEPENDS=	lapack.3:${PORTSDIR}/math/lapack \
-		blas.1:${PORTSDIR}/math/blas
+CONFLICTS=	f2py-*
+
+OPTIONS=	ATLAS "Use optimized blas library" Off
 
 USE_PYTHON=	yes
 USE_PYDISTUTILS=yes
+MAN1=		f2py.1
+
+LATEST_LINK=	py-${PORTNAME}
+WRKSRC=	${WRKDIR}/${DISTNAME:S/r/rc/}
 
 .include <bsd.port.pre.mk>
 
+.if defined(WITH_ATLAS)
+LIB_DEPENDS+=	atlas.1:${PORTSDIR}/math/atlas
+.else
+LIB_DEPENDS+=	lapack.3:${PORTSDIR}/math/lapack \
+		blas.1:${PORTSDIR}/math/blas
+.endif
+
 .if ${OSVERSION} < 500000
 BROKEN=		does not compile
 .endif
@@ -41,7 +53,13 @@ pre-fetch:
 post-extract:
 	@${CP} ${DISTDIR}/numpy.pdf ${WRKDIR}
 
+post-patch:
+.if defined(WITH_ATLAS)
+	@${CP} ${FILESDIR}/site.cfg ${WRKSRC}
+.endif
+
 post-install:
+	${INSTALL_MAN} ${WRKSRC}/numpy/f2py/f2py.1 ${MAN1PREFIX}/man/man1
 .if !defined(NOPORTDOCS)
 	@${MKDIR} ${DOCSDIR}
 	${INSTALL_DATA} ${WRKDIR}/numpy.pdf ${DOCSDIR}
diff --git a/math/py-numpy/distinfo b/math/py-numpy/distinfo
index ad6703b9eca5..547d70d9401f 100644
--- a/math/py-numpy/distinfo
+++ b/math/py-numpy/distinfo
@@ -1,6 +1,6 @@
-MD5 (numpy-1.0b3.tar.gz) = ec360967f4a3667534828aee97a6fc51
-SHA256 (numpy-1.0b3.tar.gz) = 731d3f0e960f3d256d7f89c53e06e2290b0bafa893957e642c0e9843e47c92da
-SIZE (numpy-1.0b3.tar.gz) = 1122633
+MD5 (numpy-1.0rc1.tar.gz) = b8cd486ee334520047f9a35454dad94a
+SHA256 (numpy-1.0rc1.tar.gz) = af994dacc3e58beb51876b6d465fe5ca7435d945475ce382388453070102bb5c
+SIZE (numpy-1.0rc1.tar.gz) = 1120453
 MD5 (numpy.pdf) = 258b3758645568724ab1a3ead67db78a
 SHA256 (numpy.pdf) = 1005b55ee84265be490d8270b4e464e11f59455c220da822f6901342f5fe804f
 SIZE (numpy.pdf) = 1234555
diff --git a/math/py-numpy/files/patch-numpy-core-include-numpy-ufuncobject.h b/math/py-numpy/files/patch-numpy-core-include-numpy-ufuncobject.h
new file mode 100644
index 000000000000..3382e09819b9
--- /dev/null
+++ b/math/py-numpy/files/patch-numpy-core-include-numpy-ufuncobject.h
@@ -0,0 +1,26 @@
+--- numpy/core/include/numpy/ufuncobject.h.orig	Wed Sep 13 22:22:47 2006
++++ numpy/core/include/numpy/ufuncobject.h	Fri Sep 29 16:35:25 2006
+@@ -251,7 +251,10 @@
+ /* Solaris --------------------------------------------------------*/
+ /* --------ignoring SunOS ieee_flags approach, someone else can
+ **         deal with that! */
+-#elif defined(sun) || defined(__BSD__) || defined(__OpenBSD__) || defined(__FreeBSD__) || defined(__NetBSD__)
++#if (defined(__unix__) || defined(unix)) && !defined(USG)
++#include <sys/param.h>
++#endif
++#elif defined(sun) || defined(__BSD__) || defined(__OpenBSD__) || (defined(__FreeBSD__) && (__FreeBSD_version < 502114)) || defined(__NetBSD__)
+ #include <ieeefp.h>
+ 
+ #define UFUNC_CHECK_STATUS(ret) {				\
+@@ -265,9 +268,9 @@
+ 	(void) fpsetsticky(0);						\
+ 	}
+ 
+-#elif defined(linux) || defined(__APPLE__) || defined(__CYGWIN__) || defined(__MINGW32__)
++#elif defined(linux) || defined(__APPLE__) || defined(__CYGWIN__) || defined(__MINGW32__) || (defined(__FreeBSD__) && (__FreeBSD_version >= 502114))
+ 
+-#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__)
++#if defined(__GLIBC__) || defined(__APPLE__) || defined(__MINGW32__) || (defined(__FreeBSD__) && (__FreeBSD_version >= 502114))
+ #include <fenv.h>
+ #elif defined(__CYGWIN__)
+ #include "fenv/fenv.c"
diff --git a/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
new file mode 100644
index 000000000000..63df1556e8d5
--- /dev/null
+++ b/math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py
@@ -0,0 +1,15 @@
+--- numpy/distutils/fcompiler/__init__.py.orig	Tue Oct  3 20:39:58 2006
++++ numpy/distutils/fcompiler/__init__.py	Tue Oct  3 22:43:18 2006
+@@ -268,11 +268,7 @@
+         f90 = self.__get_cmd('compiler_f90','F90',(conf,'f90exec'))
+         # Temporarily setting f77,f90 compilers so that
+         # version_cmd can use their executables.
+-        if f77:
+-            self.set_executables(compiler_f77=[f77])
+-        if f90:
+-            self.set_executables(compiler_f90=[f90])
+-
++	# If you do that, --f77exec and --f90exec break -db
+         # Must set version_cmd before others as self.get_flags*
+         # methods may call self.get_version.
+         vers_cmd = self.__get_cmd(self.get_version_cmd)
diff --git a/math/py-numpy/files/patch-numpy-distutils-system_info.py b/math/py-numpy/files/patch-numpy-distutils-system_info.py
new file mode 100644
index 000000000000..60983bbdefaf
--- /dev/null
+++ b/math/py-numpy/files/patch-numpy-distutils-system_info.py
@@ -0,0 +1,11 @@
+--- numpy/distutils/system_info.py.orig	Sun Jul 30 11:08:48 2006
++++ numpy/distutils/system_info.py	Fri Sep 29 12:22:29 2006
+@@ -855,6 +855,8 @@
+         atlas_1 = None
+         for d in lib_dirs:
+             atlas = self.check_libs2(d,atlas_libs,[])
++            if atlas is not None:
++                atlas['libraries'].extend(['g2c', 'm', 'pthread'])
+             lapack_atlas = self.check_libs2(d,['lapack_atlas'],[])
+             if atlas is not None:
+                 lib_dirs2 = [d] + self.combine_paths(d,['atlas*','ATLAS*'])
diff --git a/math/py-numpy/files/patch-numpy_f2py_setup.py b/math/py-numpy/files/patch-numpy_f2py_setup.py
new file mode 100644
index 000000000000..a1ca10e8ab0b
--- /dev/null
+++ b/math/py-numpy/files/patch-numpy_f2py_setup.py
@@ -0,0 +1,12 @@
+--- numpy/f2py/setup.py.orig	Sat Sep 23 05:25:27 2006
++++ numpy/f2py/setup.py	Sat Sep 23 05:25:41 2006
+@@ -32,8 +32,7 @@
+     config.add_data_dir('docs')
+ 
+     config.add_data_files('src/fortranobject.c',
+-                          'src/fortranobject.h',
+-                          'f2py.1'
++                          'src/fortranobject.h'
+                           )
+ 
+     config.make_svn_version_py()
diff --git a/math/py-numpy/files/patch-system_info.py b/math/py-numpy/files/patch-system_info.py
deleted file mode 100644
index 8e0eb1361b68..000000000000
--- a/math/py-numpy/files/patch-system_info.py
+++ /dev/null
@@ -1,11 +0,0 @@
---- numpy/distutils/system_info.py.orig	Thu Jul 27 19:44:41 2006
-+++ numpy/distutils/system_info.py	Thu Jul 27 19:39:18 2006
-@@ -811,7 +811,7 @@
-     dir_env_var = 'ATLAS'
-     _lib_names = ['f77blas','cblas']
-     if sys.platform[:7]=='freebsd':
--        _lib_atlas = ['atlas_r']
-+        _lib_atlas = ['atlas_r', 'g2c']
-         _lib_lapack = ['alapack_r']
-     else:
-         _lib_atlas = ['atlas']
diff --git a/math/py-numpy/files/site.cfg b/math/py-numpy/files/site.cfg
new file mode 100644
index 000000000000..badb3f67e602
--- /dev/null
+++ b/math/py-numpy/files/site.cfg
@@ -0,0 +1,3 @@
+[atlas]
+library_dirs = /usr/local/lib
+atlas_libs = alapack_r, f77blas_r, cblas_r, atlas_r
diff --git a/math/py-numpy/pkg-plist b/math/py-numpy/pkg-plist
index 20af33c3d356..e79bc7c9b68e 100644
--- a/math/py-numpy/pkg-plist
+++ b/math/py-numpy/pkg-plist
@@ -1,716 +1,711 @@
 bin/f2py
-%%PYTHON_SITELIBDIR%%/numpy/matlib.py
-%%PYTHON_SITELIBDIR%%/numpy/dual.py
-%%PYTHON_SITELIBDIR%%/numpy/ctypeslib.py
+%%PYTHON_SITELIBDIR%%/numpy/COMPATIBILITY
+%%PYTHON_SITELIBDIR%%/numpy/DEV_README.txt
+%%PYTHON_SITELIBDIR%%/numpy/LICENSE.txt
+%%PYTHON_SITELIBDIR%%/numpy/README.txt
+%%PYTHON_SITELIBDIR%%/numpy/THANKS.txt
+%%PYTHON_SITELIBDIR%%/numpy/__config__.py
+%%PYTHON_SITELIBDIR%%/numpy/__config__.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__config__.pyo
 %%PYTHON_SITELIBDIR%%/numpy/__init__.py
-%%PYTHON_SITELIBDIR%%/numpy/setup.py
-%%PYTHON_SITELIBDIR%%/numpy/version.py
-%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.py
+%%PYTHON_SITELIBDIR%%/numpy/__init__.pyc
+%%PYTHON_SITELIBDIR%%/numpy/__init__.pyo
 %%PYTHON_SITELIBDIR%%/numpy/_import_tools.py
-%%PYTHON_SITELIBDIR%%/numpy/__config__.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/extension.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/interactive.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/from_template.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/cpuinfo.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/intelccompiler.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/misc_util.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/system_info.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/conv_template.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/line_endings.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/info.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/log.py
-%%PYTHON_SITELIBDIR%%/numpy/distutils/core.py
+%%PYTHON_SITELIBDIR%%/numpy/_import_tools.pyc
+%%PYTHON_SITELIBDIR%%/numpy/_import_tools.pyo
+%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.py
+%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.pyc
+%%PYTHON_SITELIBDIR%%/numpy/add_newdocs.pyo
+%%PYTHON_SITELIBDIR%%/numpy/core/__init__.py
+%%PYTHON_SITELIBDIR%%/numpy/core/__init__.pyc
+%%PYTHON_SITELIBDIR%%/numpy/core/__init__.pyo
+%%PYTHON_SITELIBDIR%%/numpy/core/__svn_version__.py
+%%PYTHON_SITELIBDIR%%/numpy/core/__svn_version__.pyc
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