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authortota <tota@FreeBSD.org>2016-07-15 14:02:09 +0800
committertota <tota@FreeBSD.org>2016-07-15 14:02:09 +0800
commit63d046c3958d209c7ab405c965a7f07025355da8 (patch)
treefe323c0faf196593c55735879c421be29003df65 /math
parent87159795197ed13a47f1b30aa1eb2ddfbba5d5b8 (diff)
downloadfreebsd-ports-gnome-63d046c3958d209c7ab405c965a7f07025355da8.tar.gz
freebsd-ports-gnome-63d046c3958d209c7ab405c965a7f07025355da8.tar.zst
freebsd-ports-gnome-63d046c3958d209c7ab405c965a7f07025355da8.zip
- Update to 1.1-12
- Fix LICENSE - Add "compiles" argument to USES=cran
Diffstat (limited to 'math')
-rw-r--r--math/R-cran-lme4/Makefile11
-rw-r--r--math/R-cran-lme4/distinfo5
2 files changed, 8 insertions, 8 deletions
diff --git a/math/R-cran-lme4/Makefile b/math/R-cran-lme4/Makefile
index a7c382cc4e80..3b70a74ba4af 100644
--- a/math/R-cran-lme4/Makefile
+++ b/math/R-cran-lme4/Makefile
@@ -2,21 +2,20 @@
# $FreeBSD$
PORTNAME= lme4
-DISTVERSION= 1.1-10
+DISTVERSION= 1.1-12
CATEGORIES= math
DISTNAME= ${PORTNAME}_${DISTVERSION}
MAINTAINER= tota@FreeBSD.org
COMMENT= Linear mixed-effects models using Eigen and S4
-LICENSE= GPLv2 GPLv3
-LICENSE_COMB= dual
+LICENSE= GPLv2+
-RUN_DEPENDS= R-cran-Rcpp>=0.10.5:devel/R-cran-Rcpp \
- R-cran-minqa>=1.1.15:math/R-cran-minqa \
+RUN_DEPENDS= R-cran-minqa>=1.1.15:math/R-cran-minqa \
R-cran-nloptr>=1.0.4:math/R-cran-nloptr \
+ R-cran-Rcpp>=0.10.5:devel/R-cran-Rcpp \
R-cran-RcppEigen>0:math/R-cran-RcppEigen
-USES= cran:auto-plist
+USES= cran:auto-plist,compiles
.include <bsd.port.mk>
diff --git a/math/R-cran-lme4/distinfo b/math/R-cran-lme4/distinfo
index 82d818bfbee0..9f86f3f5116b 100644
--- a/math/R-cran-lme4/distinfo
+++ b/math/R-cran-lme4/distinfo
@@ -1,2 +1,3 @@
-SHA256 (lme4_1.1-10.tar.gz) = 68377011b6e25cad72b5d813ccfc9aaf18604b2da6dfe1b94303fb2bbd2673a1
-SIZE (lme4_1.1-10.tar.gz) = 3687247
+TIMESTAMP = 1468496661
+SHA256 (lme4_1.1-12.tar.gz) = 2976b567a4a2144814ff9db987b0aa55c16122c78ecb51b9e09b87fe66a1c048
+SIZE (lme4_1.1-12.tar.gz) = 3868402
ss='column1'>| Test Plan: Currently testing in poudriere Differential Revision: https://phabric.freebsd.org/D12 * Stagify.ale2014-05-122-25/+19 | * Update to version 1.1, with fix of ports/165707 in it.edwin2014-05-112-4/+3 | | | | | PR: 165707 Submitted by: Henk van Oers <henk.van.oers@xs4all.nl> * Remove patchfile that is no longer needed (forgotten in previous commit)johans2014-05-111-119/+0 | * - Update to dnsutl 1.12johans2014-05-112-6/+12 | | | | - Adopt port * Reset more maintainers:antoine2014-05-111-1/+1 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | <yar@FreeBSD.org>: host hub.freebsd.org[8.8.178.136] said: 550 5.1.1 <yar@FreeBSD.org>: Recipient address rejected: User unknown in local <rud@cs.uni-magdeburg.de>: host mail.cs.uni-magdeburg.de[141.44.21.48] said: 550 5.1.1 <rud@cs.uni-magdeburg.de>... User unknown (in reply to RCPT TO <stefan@fh-mainz.de>: host srv-eml-pmva-02.fh-mainz.de[143.93.114.189] said: 550 5.1.1 <stefan@fh-mainz.de>: Recipient address rejected: undeliverable <ocaml-ounit-port@kotka.de>: host kotka.de[62.75.247.120] said: 550 5.1.1 <ocaml-ounit-port@kotka.de>: Recipient address rejected: User unknown in <toru@tenchi.ne.jp>: host tuna.tenchi.ne.jp[49.212.63.105] said: 550 5.1.1 <toru@tenchi.ne.jp>... User unknown (in reply to RCPT TO command) <nehe@cruzinternet.com>: host inbound.platinum.ca[69.31.192.27] said: 550 cuda_nsu User [nehe@cruzinternet.com] does not exist (in reply to RCPT TO <ports@emorific.com>: Host or domain name not found. Name service error for name=emorific.com type=AAAA: Host not found <ubique@peterhost.ru>: host mx.mail.corp.hostcomm.ru[89.111.166.49] said: 550 Sorry, no mailbox here by that name (in reply to RCPT TO command) <ports@brandon.dvalentine.com>: host ASPMX.L.GOOGLE.com[2607:f8b0:400c:c01::1a] said: 550-5.1.1 The email account that you tried to reach does not exist. With hat: portmgr * Reset a few maintainersantoine2014-05-111-1/+1 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | <adam.freebsd@fastmail.fm>: host in1-smtp.messagingengine.com[66.111.4.72] said: 550 5.1.1 <adam.freebsd@fastmail.fm>: Recipient address rejected: User unknown in local recipient table (in reply to RCPT TO command) <dnscheckengine-port@academ.com>: host ASPMX.L.GOOGLE.com[74.125.131.26] said: 550-5.1.1 The email account that you tried to reach does not exist. Please <kawahara@nlp.kuee.kyoto-u.ac.jp>: Sorry, no mailbox here by that name. (#5.1.1) <hnsmaster@h14m.org>: Host or domain name not found. Name service error for name=h14m.org type=AAAA: Host found but no data record of requested type <jre@vineyard.net>: Recipient address rejected: User unknown in virtual mailbox table (in reply to RCPT TO command) (in reply to RCPT TO command) <gawrilow@math.tu-berlin.de>: host mail.tu-berlin.de[130.149.7.33] said: 550 Recipient verify failed (in reply to RCPT TO command) <mico@bsd.hu>: host mail.datacast.hu[195.70.49.210] said: 550 5.1.1 <mico@bsd.hu>: Recipient address rejected: User unknown in virtual mailbox <gogo@cs.uni-sb.de>: host mail.cs.uni-sb.de[134.96.254.200] said: 550 5.1.1 <gogo@cs.uni-sb.de>... User unknown (in reply to RCPT TO command) <mickey@enforcer.cc>: Host or domain name not found. Name service error for name=keep.yourmail.yuk type=AAAA: Host not found <lucio@zetasolucoes.com.br>: host ASPMX.L.GOOGLE.COM[2607:f8b0:400c:c01::1a] said: 550-5.1.1 The email account that you tried to reach does not exist. <luke@novum.am.lublin.pl>: Host or domain name not found. Name service error for name=novum.am.lublin.pl type=AAAA: Host not found <aihal@users.sourceforge.net>: host mx.sourceforge.net[216.34.181.68] said: 550 unknown user (in reply to RCPT TO command) With hat: portmgr * Update to 9.10.0-P1.mat2014-05-092-4/+4 | | | | | | Changes: https://lists.isc.org/pipermail/bind-announce/2014-May/000909.html Security: CVE-2014-3214 Sponsored by: Absolight * Convert all :U to :tu and :L to :tlbapt2014-05-051-1/+1 | | | | | | | | | | | | | | Since FreeBSD 8.4 and FreeBSD 9.1 make(1) do support :tu and :tl as a replacement for :U and :L (which has been marked as deprecated) bmake which is the default on FreeBSD 10+ only support by default :tu/:tl a hack has been added at the time to support :U and :L to ease migration. This hack is now not necessary anymore Note that this makes the ports tree incompatible with make(1) from FreeBSD 8.3 or earlier With hat: portmgr * Update to 9.10.0mat2014-05-022-4/+4 | | | | | | Changes: https://lists.isc.org/pipermail/bind-announce/2014-May/000908.html Relnotes: yes (if applicable to ports) Sponsored by: Absolight * Convert p5-DNS-Ldns to staging.mat2014-04-303-47/+50 | | | | | Truckload of pointy hats to: erwin Sponsored by: Absolight * Add p5-DNS-Ldns, perl bindings for ldns.erwin2014-04-303-0/+58 | | | | | | | | | This port inherits NO_STAGE from its master port. PR: ports/185788 Submitted by: Jaap Akkerhuis <jaap@NLnetLabs.nl> Sponsored by: DK Hostmaster A/S Approved by: portmgr (self) * - Update to 1.4.5erwin2014-04-303-31/+38 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Added Staging support; Modern options handling where possible. Bugfixes: OPENDNSSEC-607: libhsm not using all mandatory attributes for GOST key generation. OPENDNSSEC-609: ods-ksmutil: 'key list' command fails with error in 1.4.4 on MySQL. Reported by Mark Elkins <mje@posix.co.za> Includes the update to 1.4.4: Updates: SUPPORT-114: libhsm: Optimize storage in HSM by deleting the public key directly if SkipPublicKey is used [OPENDNSSEC-574]. OPENDNSSEC-358: ods-ksmutil: Extend 'key list' command with options to filter on key type and state. This allows keys in the GENERATE and DEAD state to be output. OPENDNSSEC-549: Signer Engine: Put NSEC3 records on empty non-terminals derived from unsigned delegations (be compatible with servers that are incompatible with RFC 5155 errata 3441). Bugfixes: SUPPORT-86: Fixed build on OS X [OPENDNSSEC-512]. SUPPORT-97: Signer Engine: Fix after restart signer thinks zone has expired [OPENDNSSEC-526]. SUPPORT-101: Signer Engine: Fix multiple zone transfer to single file bug [OPENDNSSEC-529]. SUPPORT-102: Signer Engine: Fix statistics (count can be negative)/ SUPPORT-108: Signer Engine: Don't replace tabs in RRs with whitespace [OPENDNSSEC-520]. SUPPORT-116: ods-ksmutil: 'key import' date validation fails on certain dates [OPENDNSSEC-553]. SUPPORT-128: ods-ksmutil. Man page had incorrect formatting [OPENDNSSEC-576]. SUPPORT-127: ods-signer: Fix manpage sections. OPENDNSSEC-457: ods-ksmutil: Add a check on the 'zone add' input/output type parameter to allow only File or DNS. OPENDNSSEC-481: libhsm: Fix an off-by-one length check error. OPENDNSSEC-482: libhsm: Improved cleanup for C_FindObjects. OPENDNSSEC-531: ods-ksmutil: Exported value of in 'policy export' output could be wrong on MySQL. OPENDNSSEC-537: libhsm: Possible memory corruption in hsm_get_slot_id. OPENDNSSEC-544: Signer Engine: Fix assertion error that happens on an IXFR request with EDNS. OPENDNSSEC-546: enforcer & ods-ksmutil: Improve logging on key creation and alloctaion. OPENDNSSEC-560: Signer Engine: Don't crash when unsigned zone has no SOA. Signer Engine: Fix a race condition when stopping daemon. PR: 188482 Submitted by: Jaap Akkerhuis <jaap@NLnetLabs.nl> Sponsored by: DK Hostmaster A/S * Update to 9.10.0.rc2mat2014-04-2811-400/+328 | | | | | | | | - Remove REPLACE_BASE option, I should have done so when adding 9.10.0.rc1 - Clean the Makefile a bit Changes: https://lists.isc.org/pipermail/bind-announce/2014-April/000907.html Sponsored by: Absolight * Upgrade to new upstream version 2.70. Upstream changelog:mandree2014-04-282-4/+3 | | | | | | | | | | | Fix crash, introduced in 2.69, on TCP request when dnsmasq compiled with DNSSEC support, but running without DNSSEC enabled. Thanks to Manish Sing for spotting that one. Fix regression which broke ipset functionality. Thanks to Wang Jian for the bug report. Submitted by: Herbert J. Skuhra * - Update to 0.39sunpoet2014-04-272-3/+9 | | | | | | | | - Add RHBL option Changes: http://search.cpan.org/dist/Net-DNSBL-MultiDaemon/Changes PR: ports/188613 Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> (maintainer) * Bump PORTREVISION to force package rebuild after the recent Xorg update.tijl2014-04-261-0/+1 | | | | The packages still require old library versions of freetype2 and libxml2. * Support stagebapt2014-04-261-30/+20 | | | | Cleanup a bit * Convert to USES=tarbdrewery2014-04-251-1/+1 | * Remove the last @comment $FreeBSD$ from plists.mat2014-04-251-1/+0 | | | | | With hat: portmgr Sponsored by: Absolight * Switch to use lua 5.2bapt2014-04-222-5/+5 | * Add IGNORE if the default python is not the right one.mat2014-04-221-2/+8 | | | | Sponsored by: Absolight * Update to 1.2.0.mat2014-04-213-157/+567 | | | | | Changes: https://lists.isc.org/pipermail/bind10-announce/2014-April/000033.html Sponsored by: Absolight * - Fix plist to have proper 'rmdir DIR' ordering.bdrewery2014-04-214-7/+8 | | | | | | | | Pkgng will not detect the directory otherwise. This was due to incorrectly advise in the check-stagedir.sh script, fixed in r351587 With hat: portmgr * Additional port improvementsjpaetzel2014-04-201-13/+4 | * Add needed dependancies for this port.jpaetzel2014-04-201-0/+15 | | | | | | | | | Due to the FreeNAS build system being very....simplistic the deps weren't needed in the port there, however to work properly in FreeBSD they of course are needed. Noticed by: swills Pointyhat to: jpaetzel * Port improvementsjpaetzel2014-04-192-8/+4 | | | | Submitted by: Ruslan Makhmatkhanov * Add a new port, py-bonjour. Provides python bindings tojpaetzel2014-04-195-0/+28 | | | | zeroconf. * Bump port revision after I changed LIB_DEPENDS.peter2014-04-181-1/+1 | | | | | Approved by: bdrewery Pointy-hat to: peter * Fix apparent typo in LIB_PATH that prevented build with LIBEVENT14peter2014-04-181-1/+1 | | | | Approved by: bdrewery * Fix the rc script reload command.mat2014-04-186-6/+27 | | | | | Noticed by: David Samms Sponsored by: Absolight * - Use DO_MAKE_BUILD instead of MAKE_CMD so that WITH_CCACHE_BUILD works.bdrewery2014-04-171-1/+1 | * Bump portrevision for shlib change in libxml2zeising2014-04-171-1/+1 | | | | Approved by: portmgr (bdrewery, implicit) * The FreeBSD x11@ and graphics team proudly presentszeising2014-04-175-2/+5 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a zeising, kwm production, with help from dumbbell, bdrewery: NEW XORG ON FREEBSD 9-STABLE AND 10-STABLE This update switches over to use the new xorg stack by default on FreeBSD 9 and 10 stable, on osversions where vt(9) is available. It is still possible to use the old stack by specifying WITHOUT_NEW_XORG in /etc/make.conf . FreeBSD 8-STABLE and released versions of FreeBSD still use the old version. A package repository with binary packages for new xorg will be available soon. This patch also contains updates of libxcb and related ports, pixman, as well as some drivers and utilities. Bump portrevisions for xf86-* ports, as well as virtualbox-ose-additions due to xserver version change. Apart from these updates, the way shared libraries are handled has been changed for all xorg ports, as well as libxml2 and freetype, which means ltverhack is gone and as a consequence shared libraries have been bumped. The plan is that this change will make library bumps less likely in the future. All affected ports have had their portrevisions bumped as a consequence of this. Fix some issues where WITH_NEW_XORG weren't detected properly on CURRENT. Update instructions, hardware support, and more notes can be found on https://wiki.freebsd.org/Graphics Thanks to: all testers, bdrewery and the FreeBSD x11@ team exp-run by: bdrewery [1] PR: ports/187602 [1] Approved by: portmgr (bdrewery), core (jhb) * Propose local-service option in default .example configuration.mandree2014-04-162-0/+16 | | | | | PR: ports/188548 Submitted by: Jeroen van der Ham <jeroen@1sand0s.nl> * - Really fix unbound_anchorflagssem2014-04-132-8/+18 | | | | | - New LIB_DEPENDS format - Strip binaries * Use @sample for my port, cleanup an etc/PORTNAME into ETCDIR.mat2014-04-136-37/+15 | | | | Sponsored by: Absolight * - Fix unbound_anchorflags in RC scriptsem2014-04-111-1/+1 | * Ignore this port while the release is newer than the candidates.mandree2014-04-111-1/+1 | * Update to new upstream 2.69 release. Adds DNSSEC support.mandree2014-04-113-11/+22 | | | | Full changelog: <http://www.thekelleys.org.uk/dnsmasq/CHANGELOG> * Two changes to the RC scriptmat2014-04-116-14/+15 | | | | | | | | | - Add a dependency on ldconfig - Allow people to change the pidfile PR: 188439 Submitted by: Oliver Lehmann Sponsored by: Absolight * Introduce BIND 9.10.0rc1mat2014-04-1119-0/+1508 | | | | | | | | | | | | | | | | | BIND 9.10 includes a number of changes from earlier releases, including: - DNS Response-rate limiting (DNS RRL) - A new "prefetch" option can improve recursive resolver performance - ACLs can now be specified based on geographic location using the MaxMind GeoIP databases. - A new compile-time option, NATIVE_PKCS11 allows the BIND 9 cryptography functions to use the PKCS#11 API natively. *NOTE* This is a release candidate, it may contain bugs. *NOTE* Changes: https://lists.isc.org/pipermail/bind-announce/2014-April/000906.html Sponsored by: Absolight * Remove noop patch.mat2014-04-102-24/+0 | | | | Sponsored by: Absolight * - Add a patch to install missing man pagemat2014-04-095-7/+45 | | | | | | | - Add dnssec-* tools to bind-tools[1] Requested by: many [1] Sponsored by: Absolight * - Add staging supportpawel2014-04-052-7/+5 | | | | | - Remove leading article from COMMENT - Convert to USES=gmake * - Add staging supportpawel2014-04-052-44/+23 | | | | | | - Remove leading article from COMMENT - Don't define ETCDIR, it's done by ports framework - Define DOCS EXAMPLES options * - Add staging supportpawel2014-04-052-24/+16 | | | | | - Remove leading article from COMMENT - Define DOCS option * Add staging supportpawel2014-04-052-18/+14 | * - Fix race during build of DJB ports that could lead to files leaking out ofbdrewery2014-04-041-3/+4 | | | | | | | | | | | | STAGEDIR. The auto_home.c/auto_qmail.c (depending on which conf- file is used) must be deleted to or else this might not be executed depending on how quickly build and pre-install run: ./auto-str auto_home `sed 1q conf-home` > auto_home.c - Move STAGEDIR fixing to post-build with a message explaining the rebuild. - Bump PORTREVISION as pkg_install packages may have been built without some files. * - Use ECHO_CMD instead of echobdrewery2014-04-031-4/+4 | * Upgrade to new upstream release candidate #rc4.mandree2014-04-012-4/+4 | | | | | | Fixes ipset logging patch. Known issue: The executable identifies as #rc3. * Update to new upstream release candidate #2.mandree2014-03-302-4/+4 | | | | | | | | | | | | | | | | | | | | Git shortlog between 2.69 rc1 and rc2: Simon Kelley (7): Add dnssec-check-unsigned to example config file. Reorder sanity checks on UDP packet reception, to cope with failed recvfro SERVFAIL is an expected error return, don't try all servers. Terminate DS-search when reaching the root via cache entries. Cache stats availble in CHAOS .bind domain. Ensure ->sentto is valid for DNSSEC forwards. Otherwise retries SEGV. Add --dnssec-no-timecheck Tomas Hozza (2): Memory leak in error path. Handle failure of hash_questions() Wang Jian (1): Log IPSET actions. * - Fix startup scriptmat2014-03-274-7/+7 | | | | | | | | - Fix whitespace PR: 188011 Submitted by: takefu Sponsored by: Absolight * Touch all -conf files so they do not get rebuilt after auto_home.o has been ↵bapt2014-03-261-0/+1 | | | | rebuilt * - Update to 1.22sunpoet2014-03-262-3/+3 | | | | Changes: http://search.cpan.org/dist/Net-DNS-ZoneFile-Fast/Changes * Finaly pet rclint.mat2014-03-264-46/+32 | | | | | With help from: crees Sponsored by: Absolight * Remove GSSAPI from the default options.mat2014-03-252-4/+4 | | | | | | | Almost nobody needs it, and people keep having a hard time building BIND because of this. Sponsored by: Absolight * - Update to 0.1.1zi2014-03-253-11/+9 | * - Update to 4.0.3madpilot2014-03-243-9/+12 | | | | | PR: ports/187596 Submitted by: Jaap Akkerhuis <jaap@NLnetLabs.nl> (maintainer) * - Update to 0.1.18sunpoet2014-03-242-3/+3 | | | | Changes: http://search.cpan.org/dist/Mozilla-PublicSuffix/Changes * Upgrade to release candidate #1.mandree2014-03-232-7/+6 | * - Update to 0.12culot2014-03-222-3/+3 | | | | Changes: http://search.cpan.org/dist/Net-DNS-Lite/Changes * - Support stagingehaupt2014-03-201