New port: math/libmesh: Numerical simulation of partial differential equations

Submitted by:	myself
Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D13524

9 files changed, 612 insertions, 0 deletions

diff --git a/math/Makefile b/math/Makefile
index 97261ee15845..edc8727e9cd2 100644
--- a/math/Makefile
+++ b/math/Makefile
@@ -277,6 +277,7 @@
     SUBDIR += libRmath
     SUBDIR += libflame
     SUBDIR += liblbfgs
+    SUBDIR += libmesh
     SUBDIR += libmissing
     SUBDIR += libocas
     SUBDIR += liborigin
diff --git a/math/libmesh/Makefile b/math/libmesh/Makefile
new file mode 100644
index 000000000000..5ccc8aad4759
--- /dev/null
+++ b/math/libmesh/Makefile
@@ -0,0 +1,82 @@
+# Created by: Yuri Victorovich <yuri@FreeBSD.org>
+# $FreeBSD$
+
+PORTNAME=	libmesh
+DISTVERSIONPREFIX=	v
+DISTVERSION=	1.2.1
+CATEGORIES=	math
+
+MAINTAINER=	yuri@FreeBSD.org
+COMMENT=	Numerical simulation of partial differential equations
+
+LICENSE=	LGPL21
+LICENSE_FILE=	${WRKSRC}/COPYING
+
+BUILD_DEPENDS=	eigen>0:math/eigen3
+LIB_DEPENDS=	libboost_system.so:devel/boost-libs
+
+USES=		autoreconf gmake libtool
+GNU_CONFIGURE=	yes
+USE_GITHUB=	yes
+GH_ACCOUNT=	libMesh
+CONFIGURE_ARGS=	--with-methods=opt \
+		--with-thread-model=pthread \
+		--datarootdir=${DATADIR} \
+		--enable-amr \
+		--disable-strict-lgpl \
+		--enable-tetgen \
+		--enable-triagle \
+		--with-boost=${LOCALBASE} \
+		--with-eigen-include=${LOCALBASE}/include/eigen3 \
+		--disable-netcdf --disable-netcdf-4 # https://github.com/libMesh/libmesh/issues/1542
+MAKE_ARGS=	LDFLAGS="-pthread -lexecinfo"
+USE_LDCONFIG=	yes
+
+OPTIONS_DEFINE=			GLPK HDF5 MPI SFCURVES EXAMPLES
+OPTIONS_DEFAULT=		MPI SFCURVES
+GLPK_DESC=			Glpk linear programming solver library
+SFCURVES_DESC=			Sfcurves library
+
+GLPK_CONFIGURE_ENABLE=		glpk
+GLPK_LIB_DEPENDS=		libglpk.so:math/glpk
+HDF5_CONFIGURE_ENABLE=		hdf5
+HDF5_LIB_DEPENDS=		libhdf5.so:science/hdf5
+MPI_CONFIGURE_ENABLE=		mpi
+FSCURVES_CONFIGURE_ENABLE=	sfc
+EXAMPLES_CONFIGURE_ENABLE=	examples
+EXAMPLES_VARS=			PKGMESSAGE=pkg-message-examples
+SUB_FILES=			pkg-message-examples
+
+PORTEXAMPLES=	*
+
+post-extract:
+	@${FIND} ${WRKSRC} -name "*.orig" -delete
+
+post-install:
+	@${MKDIR} ${STAGEDIR}${DATADIR}
+	@${MV} ${STAGEDIR}${PREFIX}/etc/libmesh/Make.common ${STAGEDIR}${DATADIR}
+	@cd ${STAGEDIR}${PREFIX} && ${RM} -r \
+		etc/libmesh \
+		Make.common \
+		contrib \
+		libdata/pkgconfig/Make.common # https://github.com/libMesh/libmesh/issues/1539
+	@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libmesh_opt.so.0.0.0
+
+post-install-EXAMPLES-on:
+	# https://github.com/libMesh/libmesh/issues/1541
+	@${MV} ${STAGEDIR}${PREFIX}/examples ${STAGEDIR}${EXAMPLESDIR}
+	@${FIND} ${STAGEDIR}${EXAMPLESDIR} -name Makefile | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \
+		s|LIBMESH_DIR ?= .*|LIBMESH_DIR ?= ${PREFIX}| ; \
+		s|$$(LIBMESH_DIR)/Make.common|${DATADIR}/Make.common| ; \
+		s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \
+		s|$$(libmesh_LDFLAGS)|$$(libmesh_LDFLAGS) -pthread|'
+	@${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${CHMOD} +x
+	@${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \
+		s|#set -x|export LIBMESH_DIR=${PREFIX}| ; \
+		s|#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \
+		s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \
+		s|reference_elements|share/${PORTNAME}/reference_elements|'
+	@${REINPLACE_CMD} -i '' -e 's|libmesh_LIBTOOL ?= /usr/local/contrib/bin/libtool|libmesh_LIBTOOL ?= libtool|' \
+		${STAGEDIR}${DATADIR}/Make.common
+
+.include <bsd.port.mk>
diff --git a/math/libmesh/distinfo b/math/libmesh/distinfo
new file mode 100644
index 000000000000..fbe4b3a02f5a
--- /dev/null
+++ b/math/libmesh/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1513454802
+SHA256 (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 58f5a0ccc4858aa9ff6b3af9ee23b196e5ff5210708a6bb582102fcce1adeb1f
+SIZE (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 31265692
diff --git a/math/libmesh/files/patch-Makefile.am b/math/libmesh/files/patch-Makefile.am
new file mode 100644
index 000000000000..7973069df9f2
--- /dev/null
+++ b/math/libmesh/files/patch-Makefile.am
@@ -0,0 +1,14 @@
+--- Makefile.am.orig	2017-07-25 16:33:31 UTC
++++ Makefile.am
+@@ -102,9 +102,8 @@ install-data-hook:
+         fi
+ 	cd $(DESTDIR)$(prefix) && rm -f Make.common && $(LN_S) -f etc/libmesh/Make.common Make.common
+ 	cat $(DESTDIR)$(libmesh_configdir)/libmesh-config | $(SED) "s/has_been_installed=no/has_been_installed=yes/g" > $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed
+-	mv $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config && chmod +x $(DESTDIR)$(libmesh_configdir)/libmesh-config
+-	cat $(DESTDIR)$(prefix)/contrib/bin/libtool | $(SED) "s/-l //g" > $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed
+-	mv $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed $(DESTDIR)$(prefix)/contrib/bin/libtool && chmod +x $(DESTDIR)$(prefix)/contrib/bin/libtool
++	install -c $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config
++	rm $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed
+ 
+ 
+ # this rule invokes emacs on each source file to remove trailing whitespace.
diff --git a/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac b/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac
new file mode 100644
index 000000000000..1babc46b7a02
--- /dev/null
+++ b/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac
@@ -0,0 +1,11 @@
+--- contrib/netcdf/4.4.1.1/configure.ac.orig	2017-07-25 16:33:31 UTC
++++ contrib/netcdf/4.4.1.1/configure.ac
+@@ -926,7 +926,7 @@ if test "x$enable_netcdf_4" = xyes; then
+       if test "x$nc_dlfcn_h_missing" = xyes; then
+       	      AC_MSG_ERROR([Cannot find dlfcn.h, yet --enable-dynamic-loading was used.])
+       fi
+-      AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])])
++      #AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])])
+       AC_DEFINE([USE_LIBDL],[1], [if true, enable dynamic loading support])
+    fi
+ 
diff --git a/math/libmesh/files/patch-m4_libtool.m4 b/math/libmesh/files/patch-m4_libtool.m4
new file mode 100644
index 000000000000..b1ad04ae93cc
--- /dev/null
+++ b/math/libmesh/files/patch-m4_libtool.m4
@@ -0,0 +1,20 @@
+--- m4/libtool.m4.orig	2017-07-25 16:33:31 UTC
++++ m4/libtool.m4
+@@ -1948,7 +1948,7 @@ else
+   darwin*)
+     # if libdl is installed we need to link against it
+     AC_CHECK_LIB([dl], [dlopen],
+-		[lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl],[
++		[lt_cv_dlopen=dlopen lt_cv_dlopen_libs=],[
+     lt_cv_dlopen=dyld
+     lt_cv_dlopen_libs=
+     lt_cv_dlopen_self=yes
+@@ -1971,7 +1971,7 @@ else
+ 	[AC_CHECK_FUNC([dlopen],
+ 	      [lt_cv_dlopen=dlopen],
+ 	  [AC_CHECK_LIB([dl], [dlopen],
+-		[lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl],
++		[lt_cv_dlopen=dlopen lt_cv_dlopen_libs=],
+ 	    [AC_CHECK_LIB([svld], [dlopen],
+ 		  [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-lsvld],
+ 	      [AC_CHECK_LIB([dld], [dld_link],
diff --git a/math/libmesh/files/pkg-message-examples.in b/math/libmesh/files/pkg-message-examples.in
new file mode 100644
index 000000000000..d7643235eff4
--- /dev/null
+++ b/math/libmesh/files/pkg-message-examples.in
@@ -0,0 +1,13 @@
+======================================================================
+You installed libMesh, the library for numerical mesh simulations.
+
+You can run examples using for instance such command:
+
+$ cd %%EXAMPLESDIR%%/adaptivity/ex3 && gmake example-opt && ./run.sh
+
+Before running examples, please allow your user the write access:
+
+# chown -R {your-user}:users %%EXAMPLESDIR%%
+
+Examples require bash, gmake, libtool installed.
+======================================================================
diff --git a/math/libmesh/pkg-descr b/math/libmesh/pkg-descr
new file mode 100644
index 000000000000..fa450dd39e22
--- /dev/null
+++ b/math/libmesh/pkg-descr
@@ -0,0 +1,12 @@
+The libMesh library provides a framework for the numerical simulation of partial
+differential equations using arbitrary unstructured discretizations on serial
+and parallel platforms. A major goal of the library is to provide support for
+adaptive mesh refinement (AMR) computations in parallel while allowing a
+research scientist to focus on the physics they are modeling.
+
+libMesh is based on this publication:
+A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations,"
+Engineering with Computers, vol. 22, no. 3-4, pp. 237-254, 2006,
+http://dx.doi.org/10.1007/s00366-006-0049-3
+
+WWW: http://libmesh.github.io
diff --git a/math/libmesh/pkg-plist b/math/libmesh/pkg-plist
new file mode 100644
index 000000000000..bd4fa5bb0900
--- /dev/null
+++ b/math/libmesh/pkg-plist
@@ -0,0 +1,456 @@
+bin/calculator-opt
+bin/compare-opt
+bin/fparser_parse-opt
+bin/getpot_parse-opt
+bin/libmesh-config
+bin/meshavg-opt
+bin/meshbcid-opt
+bin/meshdiff-opt
+bin/meshid-opt
+bin/meshnorm-opt
+bin/meshplot-opt
+bin/meshtool-opt
+bin/output_libmesh_version-opt
+bin/projection-opt
+bin/solution_components-opt
+bin/splitter-opt
+include/libmesh/abaqus_io.h
+include/libmesh/adaptive_time_solver.h
+include/libmesh/adjoint_refinement_estimator.h
+include/libmesh/adjoint_residual_error_estimator.h
+include/libmesh/analytic_function.h
+include/libmesh/auto_ptr.h
+include/libmesh/boundary_info.h
+include/libmesh/boundary_mesh.h
+include/libmesh/boundary_volume_solution_transfer.h
+include/libmesh/bounding_box.h
+include/libmesh/cell.h
+include/libmesh/cell_hex.h
+include/libmesh/cell_hex20.h
+include/libmesh/cell_hex27.h
+include/libmesh/cell_hex8.h
+include/libmesh/cell_inf.h
+include/libmesh/cell_inf_hex.h
+include/libmesh/cell_inf_hex16.h
+include/libmesh/cell_inf_hex18.h
+include/libmesh/cell_inf_hex8.h
+include/libmesh/cell_inf_prism.h
+include/libmesh/cell_inf_prism12.h
+include/libmesh/cell_inf_prism6.h
+include/libmesh/cell_prism.h
+include/libmesh/cell_prism15.h
+include/libmesh/cell_prism18.h
+include/libmesh/cell_prism6.h
+include/libmesh/cell_pyramid.h
+include/libmesh/cell_pyramid13.h
+include/libmesh/cell_pyramid14.h
+include/libmesh/cell_pyramid5.h
+include/libmesh/cell_tet.h
+include/libmesh/cell_tet10.h
+include/libmesh/cell_tet4.h
+include/libmesh/centroid_partitioner.h
+include/libmesh/checkpoint_io.h
+include/libmesh/compare_types.h
+include/libmesh/composite_fem_function.h
+include/libmesh/composite_function.h
+include/libmesh/condensed_eigen_system.h
+include/libmesh/const_fem_function.h
+include/libmesh/const_function.h
+include/libmesh/continuation_system.h
+include/libmesh/coupling_matrix.h
+include/libmesh/default_coupling.h
+include/libmesh/dense_matrix.h
+include/libmesh/dense_matrix_base.h
+include/libmesh/dense_submatrix.h
+include/libmesh/dense_subvector.h
+include/libmesh/dense_vector.h
+include/libmesh/dense_vector_base.h
+include/libmesh/dg_fem_context.h
+include/libmesh/diff_context.h
+include/libmesh/diff_physics.h
+include/libmesh/diff_qoi.h
+include/libmesh/diff_solver.h
+include/libmesh/diff_system.h
+include/libmesh/direct_solution_transfer.h
+include/libmesh/dirichlet_boundaries.h
+include/libmesh/discontinuity_measure.h
+include/libmesh/distributed_mesh.h
+include/libmesh/distributed_vector.h
+include/libmesh/dof_map.h
+include/libmesh/dof_object.h
+include/libmesh/dtk_adapter.h
+include/libmesh/dtk_evaluator.h
+include/libmesh/dtk_solution_transfer.h
+include/libmesh/edge.h
+include/libmesh/edge_edge2.h
+include/libmesh/edge_edge3.h
+include/libmesh/edge_edge4.h
+include/libmesh/edge_inf_edge2.h
+include/libmesh/eigen_core_support.h
+include/libmesh/eigen_preconditioner.h
+include/libmesh/eigen_solver.h
+include/libmesh/eigen_sparse_linear_solver.h
+include/libmesh/eigen_sparse_matrix.h
+include/libmesh/eigen_sparse_vector.h
+include/libmesh/eigen_system.h
+include/libmesh/eigen_time_solver.h
+include/libmesh/elem.h
+include/libmesh/elem_assembly.h
+include/libmesh/elem_cutter.h
+include/libmesh/elem_hash.h
+include/libmesh/elem_quality.h
+include/libmesh/elem_range.h
+include/libmesh/ensight_io.h
+include/libmesh/enum_convergence_flags.h
+include/libmesh/enum_eigen_solver_type.h
+include/libmesh/enum_elem_quality.h
+include/libmesh/enum_elem_type.h
+include/libmesh/enum_error_estimator_type.h
+include/libmesh/enum_fe_family.h
+include/libmesh/enum_inf_map_type.h
+include/libmesh/enum_io_package.h
+include/libmesh/enum_norm_type.h
+include/libmesh/enum_order.h
+include/libmesh/enum_parallel_type.h
+include/libmesh/enum_point_locator_type.h
+include/libmesh/enum_preconditioner_type.h
+include/libmesh/enum_quadrature_type.h
+include/libmesh/enum_solver_package.h
+include/libmesh/enum_solver_type.h
+include/libmesh/enum_subset_solve_mode.h
+include/libmesh/enum_xdr_mode.h
+include/libmesh/equation_systems.h
+include/libmesh/error_estimator.h
+include/libmesh/error_vector.h
+include/libmesh/euler2_solver.h
+include/libmesh/euler_solver.h
+include/libmesh/exact_error_estimator.h
+include/libmesh/exact_solution.h
+include/libmesh/exodusII_io.h
+include/libmesh/explicit_system.h
+include/libmesh/face.h
+include/libmesh/face_inf_quad.h
+include/libmesh/face_inf_quad4.h
+include/libmesh/face_inf_quad6.h
+include/libmesh/face_quad.h
+include/libmesh/face_quad4.h
+include/libmesh/face_quad4_shell.h
+include/libmesh/face_quad8.h
+include/libmesh/face_quad9.h
+include/libmesh/face_tri.h
+include/libmesh/face_tri3.h
+include/libmesh/face_tri3_shell.h
+include/libmesh/face_tri3_subdivision.h
+include/libmesh/face_tri6.h
+include/libmesh/factory.h
+include/libmesh/fe.h
+include/libmesh/fe_abstract.h
+include/libmesh/fe_base.h
+include/libmesh/fe_compute_data.h
+include/libmesh/fe_interface.h
+include/libmesh/fe_macro.h
+include/libmesh/fe_map.h
+include/libmesh/fe_transformation_base.h
+include/libmesh/fe_type.h
+include/libmesh/fe_xyz_map.h
+include/libmesh/fem_context.h
+include/libmesh/fem_function_base.h
+include/libmesh/fem_physics.h
+include/libmesh/fem_system.h
+include/libmesh/first_order_unsteady_solver.h
+include/libmesh/fourth_error_estimators.h
+include/libmesh/fparser.hh
+include/libmesh/fparser_ad.hh
+include/libmesh/frequency_system.h
+include/libmesh/fro_io.h
+include/libmesh/function_base.h
+include/libmesh/getpot.h
+include/libmesh/ghost_point_neighbors.h
+include/libmesh/ghosting_functor.h
+include/libmesh/gmsh_io.h
+include/libmesh/gmv_io.h
+include/libmesh/gnuplot_io.h
+include/libmesh/h1_fe_transformation.h
+include/libmesh/hashword.h
+include/libmesh/hcurl_fe_transformation.h
+include/libmesh/hilbert_sfc_partitioner.h
+include/libmesh/hp_coarsentest.h
+include/libmesh/hp_selector.h
+include/libmesh/hp_singular.h
+include/libmesh/id_types.h
+include/libmesh/ignore_warnings.h
+include/libmesh/implicit_system.h
+include/libmesh/inf_elem_builder.h
+include/libmesh/inf_fe.h
+include/libmesh/inf_fe_instantiate_1D.h
+include/libmesh/inf_fe_instantiate_2D.h
+include/libmesh/inf_fe_instantiate_3D.h
+include/libmesh/inf_fe_macro.h
+include/libmesh/jump_error_estimator.h
+include/libmesh/kelly_error_estimator.h
+include/libmesh/libmesh.h
+include/libmesh/libmesh_C_isnan.h
+include/libmesh/libmesh_base.h
+include/libmesh/libmesh_common.h
+include/libmesh/libmesh_config.h
+include/libmesh/libmesh_documentation.h
+include/libmesh/libmesh_exceptions.h
+include/libmesh/libmesh_logging.h
+include/libmesh/libmesh_nullptr.h
+include/libmesh/libmesh_singleton.h
+include/libmesh/libmesh_version.h
+include/libmesh/linear_implicit_system.h
+include/libmesh/linear_partitioner.h
+include/libmesh/linear_solver.h
+include/libmesh/location_maps.h
+include/libmesh/mapped_subdomain_partitioner.h
+include/libmesh/mapvector.h
+include/libmesh/matlab_io.h
+include/libmesh/medit_io.h
+include/libmesh/memory_solution_history.h
+include/libmesh/mesh.h
+include/libmesh/mesh_base.h
+include/libmesh/mesh_communication.h
+include/libmesh/mesh_function.h
+include/libmesh/mesh_generation.h
+include/libmesh/mesh_input.h
+include/libmesh/mesh_inserter_iterator.h
+include/libmesh/mesh_modification.h
+include/libmesh/mesh_output.h
+include/libmesh/mesh_refinement.h
+include/libmesh/mesh_serializer.h
+include/libmesh/mesh_smoother.h
+include/libmesh/mesh_smoother_laplace.h
+include/libmesh/mesh_smoother_vsmoother.h
+include/libmesh/mesh_subdivision_support.h
+include/libmesh/mesh_tetgen_interface.h
+include/libmesh/mesh_tetgen_wrapper.h
+include/libmesh/mesh_tools.h
+include/libmesh/mesh_triangle_holes.h
+include/libmesh/mesh_triangle_interface.h
+include/libmesh/mesh_triangle_wrapper.h
+include/libmesh/meshfree_interpolation.h
+include/libmesh/meshfree_solution_transfer.h
+include/libmesh/meshfunction_solution_transfer.h
+include/libmesh/metis_csr_graph.h
+include/libmesh/metis_partitioner.h
+include/libmesh/morton_sfc_partitioner.h
+include/libmesh/multi_predicates.h
+include/libmesh/namebased_io.h
+include/libmesh/nanoflann.hpp
+include/libmesh/nemesis_io.h
+include/libmesh/newmark_solver.h
+include/libmesh/newmark_system.h
+include/libmesh/newton_solver.h
+include/libmesh/nlopt_optimization_solver.h
+include/libmesh/no_solution_history.h
+include/libmesh/node.h
+include/libmesh/node_elem.h
+include/libmesh/node_range.h
+include/libmesh/nonlinear_implicit_system.h
+include/libmesh/nonlinear_solver.h
+include/libmesh/null_output_iterator.h
+include/libmesh/number_lookups.h
+include/libmesh/numeric_vector.h
+include/libmesh/off_io.h
+include/libmesh/optimization_solver.h
+include/libmesh/optimization_system.h
+include/libmesh/ostream_proxy.h
+include/libmesh/parallel.h
+include/libmesh/parallel_algebra.h
+include/libmesh/parallel_bin_sorter.h
+include/libmesh/parallel_communicator_specializations
+include/libmesh/parallel_elem.h
+include/libmesh/parallel_ghost_sync.h
+include/libmesh/parallel_histogram.h
+include/libmesh/parallel_implementation.h
+include/libmesh/parallel_mesh.h
+include/libmesh/parallel_node.h
+include/libmesh/parallel_object.h
+include/libmesh/parallel_sort.h
+include/libmesh/parameter_accessor.h
+include/libmesh/parameter_multiaccessor.h
+include/libmesh/parameter_multipointer.h
+include/libmesh/parameter_pointer.h
+include/libmesh/parameter_vector.h
+include/libmesh/parameters.h
+include/libmesh/parmetis_partitioner.h
+include/libmesh/parsed_fem_function.h
+include/libmesh/parsed_fem_function_parameter.h
+include/libmesh/parsed_function.h
+include/libmesh/parsed_function_parameter.h
+include/libmesh/partitioner.h
+include/libmesh/patch.h
+include/libmesh/patch_recovery_error_estimator.h
+include/libmesh/perf_log.h
+include/libmesh/perfmon.h
+include/libmesh/periodic_boundaries.h
+include/libmesh/periodic_boundary.h
+include/libmesh/periodic_boundary_base.h
+include/libmesh/petsc_auto_fieldsplit.h
+include/libmesh/petsc_diff_solver.h
+include/libmesh/petsc_linear_solver.h
+include/libmesh/petsc_macro.h
+include/libmesh/petsc_matrix.h
+include/libmesh/petsc_nonlinear_solver.h
+include/libmesh/petsc_preconditioner.h
+include/libmesh/petsc_solver_exception.h
+include/libmesh/petsc_vector.h
+include/libmesh/petscdmlibmesh.h
+include/libmesh/plane.h
+include/libmesh/plt_loader.h
+include/libmesh/point.h
+include/libmesh/point_locator_base.h
+include/libmesh/point_locator_tree.h
+include/libmesh/point_neighbor_coupling.h
+include/libmesh/pool_allocator.h
+include/libmesh/postscript_io.h
+include/libmesh/preconditioner.h
+include/libmesh/print_trace.h
+include/libmesh/qoi_set.h
+include/libmesh/quadrature.h
+include/libmesh/quadrature_clough.h
+include/libmesh/quadrature_composite.h
+include/libmesh/quadrature_conical.h
+include/libmesh/quadrature_gauss.h
+include/libmesh/quadrature_gauss_lobatto.h
+include/libmesh/quadrature_gm.h
+include/libmesh/quadrature_grid.h
+include/libmesh/quadrature_jacobi.h
+include/libmesh/quadrature_monomial.h
+include/libmesh/quadrature_simpson.h
+include/libmesh/quadrature_trap.h
+include/libmesh/radial_basis_functions.h
+include/libmesh/radial_basis_interpolation.h
+include/libmesh/raw_accessor.h
+include/libmesh/rb_assembly_expansion.h
+include/libmesh/rb_construction.h
+include/libmesh/rb_construction_base.h
+include/libmesh/rb_data_deserialization.h
+include/libmesh/rb_data_serialization.h
+include/libmesh/rb_eim_assembly.h
+include/libmesh/rb_eim_construction.h
+include/libmesh/rb_eim_evaluation.h
+include/libmesh/rb_eim_theta.h
+include/libmesh/rb_evaluation.h
+include/libmesh/rb_parameters.h
+include/libmesh/rb_parametrized.h
+include/libmesh/rb_parametrized_function.h
+include/libmesh/rb_scm_construction.h
+include/libmesh/rb_scm_evaluation.h
+include/libmesh/rb_temporal_discretization.h
+include/libmesh/rb_theta.h
+include/libmesh/rb_theta_expansion.h
+include/libmesh/reference_counted_object.h
+include/libmesh/reference_counter.h
+include/libmesh/reference_elem.h
+include/libmesh/refinement_selector.h
+include/libmesh/remote_elem.h
+include/libmesh/replicated_mesh.h
+include/libmesh/restore_warnings.h
+include/libmesh/safe_bool.h
+include/libmesh/second_order_unsteady_solver.h
+include/libmesh/sensitivity_data.h
+include/libmesh/serial_mesh.h
+include/libmesh/sfc_partitioner.h
+include/libmesh/shell_matrix.h
+include/libmesh/sibling_coupling.h
+include/libmesh/side.h
+include/libmesh/single_predicates.h
+include/libmesh/slepc_eigen_solver.h
+include/libmesh/slepc_macro.h
+include/libmesh/solution_history.h
+include/libmesh/solution_transfer.h
+include/libmesh/solver_configuration.h
+include/libmesh/sparse_matrix.h
+include/libmesh/sparse_shell_matrix.h
+include/libmesh/sparsity_pattern.h
+include/libmesh/sphere.h
+include/libmesh/statistics.h
+include/libmesh/steady_solver.h
+include/libmesh/steady_system.h
+include/libmesh/stored_range.h
+include/libmesh/string_to_enum.h
+include/libmesh/subdomain_partitioner.h
+include/libmesh/sum_shell_matrix.h
+include/libmesh/surface.h
+include/libmesh/system.h
+include/libmesh/system_norm.h
+include/libmesh/system_subset.h
+include/libmesh/system_subset_by_subdomain.h
+include/libmesh/tao_optimization_solver.h
+include/libmesh/tecplot_io.h
+include/libmesh/tensor_shell_matrix.h
+include/libmesh/tensor_tools.h
+include/libmesh/tensor_value.h
+include/libmesh/tetgen.h
+include/libmesh/tetgen_io.h
+include/libmesh/threads.h
+include/libmesh/threads_allocators.h
+include/libmesh/threads_none.h
+include/libmesh/threads_pthread.h
+include/libmesh/threads_tbb.h
+include/libmesh/time_solver.h
+include/libmesh/timestamp.h
+include/libmesh/topology_map.h
+include/libmesh/transient_rb_assembly_expansion.h
+include/libmesh/transient_rb_construction.h
+include/libmesh/transient_rb_evaluation.h
+include/libmesh/transient_rb_theta_expansion.h
+include/libmesh/transient_system.h
+include/libmesh/tree.h
+include/libmesh/tree_base.h
+include/libmesh/tree_node.h
+include/libmesh/triangle.h
+include/libmesh/trilinos_aztec_linear_solver.h
+include/libmesh/trilinos_epetra_matrix.h
+include/libmesh/trilinos_epetra_vector.h
+include/libmesh/trilinos_nox_nonlinear_solver.h
+include/libmesh/trilinos_preconditioner.h
+include/libmesh/twostep_time_solver.h
+include/libmesh/type_n_tensor.h
+include/libmesh/type_tensor.h
+include/libmesh/type_vector.h
+include/libmesh/ucd_io.h
+include/libmesh/uniform_refinement_estimator.h
+include/libmesh/unsteady_solver.h
+include/libmesh/unstructured_mesh.h
+include/libmesh/unv_io.h
+include/libmesh/utility.h
+include/libmesh/variable.h
+include/libmesh/variant_filter_iterator.h
+include/libmesh/vector_value.h
+include/libmesh/vectormap.h
+include/libmesh/vtk_io.h
+include/libmesh/weighted_patch_recovery_error_estimator.h
+include/libmesh/wrapped_function.h
+include/libmesh/wrapped_functor.h
+include/libmesh/xdr_cxx.h
+include/libmesh/xdr_io.h
+include/libmesh/zero_function.h
+lib/libmesh_opt.so
+lib/libmesh_opt.so.0
+lib/libmesh_opt.so.0.0.0
+libdata/pkgconfig/libmesh-dbg.pc
+libdata/pkgconfig/libmesh-devel.pc
+libdata/pkgconfig/libmesh-oprof.pc
+libdata/pkgconfig/libmesh-opt.pc
+libdata/pkgconfig/libmesh-prof.pc
+libdata/pkgconfig/libmesh.pc
+%%DATADIR%%/reference_elements/2D/one_quad.xda
+%%DATADIR%%/reference_elements/2D/one_quad8.xda
+%%DATADIR%%/reference_elements/2D/one_quad9.xda
+%%DATADIR%%/reference_elements/2D/one_tri.xda
+%%DATADIR%%/reference_elements/2D/one_tri6.xda
+%%DATADIR%%/reference_elements/3D/one_hex.xda
+%%DATADIR%%/reference_elements/3D/one_hex20.xda
+%%DATADIR%%/reference_elements/3D/one_hex27.xda
+%%DATADIR%%/reference_elements/3D/one_prism.xda
+%%DATADIR%%/reference_elements/3D/one_prism15.xda
+%%DATADIR%%/reference_elements/3D/one_prism18.xda
+%%DATADIR%%/reference_elements/3D/one_pyramid.xda
+%%DATADIR%%/reference_elements/3D/one_pyramid13.xda
+%%DATADIR%%/reference_elements/3D/one_pyramid14.xda
+%%DATADIR%%/reference_elements/3D/one_tet.xda
+%%DATADIR%%/reference_elements/3D/one_tet10.xda
+%%DATADIR%%/Make.common