- Update to 4.8.1

7 files changed, 285 insertions, 207 deletions

diff --git a/math/cgal/Makefile b/math/cgal/Makefile
index 295228ef36cf..ddd497393005 100644
--- a/math/cgal/Makefile
+++ b/math/cgal/Makefile
@@ -2,10 +2,9 @@
 # $FreeBSD$
 
 PORTNAME=	cgal
-PORTVERSION=	4.6
-PORTREVISION=	1
+PORTVERSION=	4.8.1
 CATEGORIES=	math
-MASTER_SITES=	http://gforge.inria.fr/frs/download.php/34703/
+MASTER_SITES=	https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-4.8.1/
 DISTNAME=	CGAL-${PORTVERSION}
 
 MAINTAINER=	wen@FreeBSD.org
@@ -20,22 +19,24 @@ LIB_DEPENDS=	libmpfr.so:math/mpfr \
 		libgmp.so:math/gmp
 
 USE_LDCONFIG=		yes
-USES=			cmake tar:bzip2 shebangfix
-USE_QT4=		corelib qmake_build moc_build rcc_build uic_build svg
-CMAKE_ARGS=		-DWITH_CGAL_Qt3=OFF
-SHEBANG_FILES=		scripts/cgal_create_CMakeLists
+USES=			cmake shebangfix tar:xz
+USE_QT5=		buildtools_build core qmake_build widgets
+SHEBANG_FILES=		scripts/cgal_create_CMakeLists \
+			scripts/cgal_create_cmake_script
 HAS_CONFIGURE=		yes
-LDFLAGS+=		-L${LOCALBASE}/lib
 
 OPTIONS_DEFINE=		GUI
 OPTIONS_DEFAULT=	GUI
 OPTIONS_SUB=		yes
 
 GUI_DESC=		Build libCGAL_ImageIO and libCGAL_Qt4
-GUI_USE=		GL=glu QT4=gui,opengl
+GUI_USE=		GL=glu,gl QT5=gui,opengl
 GUI_CMAKE_OFF=		-DWITH_CGAL_Qt4=OFF -DWITH_CGAL_ImageIO=OFF
 
-post-install:
-	${INSTALL_MAN} ${WRKSRC}/auxiliary/cgal_create_cmake_script.1 ${STAGEDIR}${PREFIX}/man/man1/
+.include <bsd.port.options.mk>
+
+.if ${ARCH} == i386 && ${OSVERSION} >= 1100000
+USE_GCC=	yes
+.endif
 
 .include <bsd.port.mk>
diff --git a/math/cgal/distinfo b/math/cgal/distinfo
index cd40c45cc63a..13d95b2780d5 100644
--- a/math/cgal/distinfo
+++ b/math/cgal/distinfo
@@ -1,2 +1,3 @@
-SHA256 (CGAL-4.6.tar.bz2) = 9f267f30a827b28a14f2a3642ac2d0479df360d3995e02d1bc5b15c7b6cf9daf
-SIZE (CGAL-4.6.tar.bz2) = 15726365
+TIMESTAMP = 1467676126
+SHA256 (CGAL-4.8.1.tar.xz) = fa2036e0a53cc54eee3dffe4763028e9aec831672c8259fa376d3c29e8f781b0
+SIZE (CGAL-4.8.1.tar.xz) = 13492048
diff --git a/math/cgal/files/patch-CMakeLists.txt b/math/cgal/files/patch-CMakeLists.txt
index 08d59e928efa..a86adc697c92 100644
--- a/math/cgal/files/patch-CMakeLists.txt
+++ b/math/cgal/files/patch-CMakeLists.txt
@@ -1,28 +1,20 @@
---- CMakeLists.txt.orig	2012-10-17 14:00:39.000000000 -0500
-+++ CMakeLists.txt	2013-03-17 15:51:01.000000000 -0500
-@@ -801,9 +801,9 @@
+--- CMakeLists.txt.orig	2016-06-13 12:37:16 UTC
++++ CMakeLists.txt
+@@ -729,7 +729,7 @@ set ( CGAL_INSTALL_DOC_DIR "share/doc/${
+   CACHE STRING "The folder where CGAL documentation and license files will be installed, relative to CMAKE_INSTALL_PREFIX" 
+   )
  
+-set ( CGAL_INSTALL_MAN_DIR "share/man/man1"  
++set ( CGAL_INSTALL_MAN_DIR "man/man1"  
+   CACHE STRING "The folder where manual pages for CGAL scripts will be installed, relative to CMAKE_INSTALL_PREFIX" 
+   )
+ 
+@@ -816,7 +816,7 @@ create_CGALconfig_files()
  # DESTINATION option is mandatory; skipping it breaks CPack!
  
--if(CGAL_INSTALL_DOC_DIR)
+ if(CGAL_INSTALL_DOC_DIR)
 -  install(FILES AUTHORS CHANGES LICENSE LICENSE.FREE_USE LICENSE.GPL LICENSE.LGPL DESTINATION ${CGAL_INSTALL_DOC_DIR} )
--endif()
-+#if(CGAL_INSTALL_DOC_DIR)
 +#  install(FILES AUTHORS CHANGES LICENSE LICENSE.FREE_USE LICENSE.GPL LICENSE.LGPL DESTINATION ${CGAL_INSTALL_DOC_DIR} )
-+#endif()
+ endif()
  
  #install all includes collected in trunk et cetera
- 
-@@ -843,9 +843,9 @@
- 
- install(FILES ${CMAKE_BINARY_DIR}/config/CGALConfig.cmake DESTINATION ${CGAL_INSTALL_CMAKE_DIR} )
- 
--if(CGAL_INSTALL_MAN_DIR)
--  install(FILES auxiliary/cgal_create_cmake_script.1 DESTINATION ${CGAL_INSTALL_MAN_DIR} )
--endif()
-+#if(CGAL_INSTALL_MAN_DIR)
-+#  install(FILES auxiliary/cgal_create_cmake_script.1 DESTINATION ${CGAL_INSTALL_MAN_DIR} )
-+#endif()
- 
- #--------------------------------------------------------------------------------------------------
- #
diff --git a/math/cgal/files/patch-include_CGAL_Straight__skeleton_2_Straight_skeleton_builder_2_impl.h b/math/cgal/files/patch-include_CGAL_Straight__skeleton_2_Straight_skeleton_builder_2_impl.h
deleted file mode 100644
index 17aeede9dc54..000000000000
--- a/math/cgal/files/patch-include_CGAL_Straight__skeleton_2_Straight_skeleton_builder_2_impl.h
+++ /dev/null
@@ -1,16 +0,0 @@
---- include/CGAL/Straight_skeleton_2/Straight_skeleton_builder_2_impl.h.orig	2014-08-29 14:14:56 UTC
-+++ include/CGAL/Straight_skeleton_2/Straight_skeleton_builder_2_impl.h
-@@ -21,6 +21,13 @@
- 
- #include <boost/bind.hpp>
- #include <boost/utility.hpp>
-+
-+// Workaround for boost bug #11880
-+#include <boost/version.hpp>
-+#if BOOST_VERSION == 106000
-+	#include <boost/type_traits/ice.hpp>
-+#endif
-+
- #include <boost/graph/adjacency_matrix.hpp>
- #include <CGAL/Unique_hash_map.h>
- 
diff --git a/math/cgal/files/patch-include_CGAL_config.h b/math/cgal/files/patch-include_CGAL_config.h
index aaadeab93ceb..ca0562243359 100644
--- a/math/cgal/files/patch-include_CGAL_config.h
+++ b/math/cgal/files/patch-include_CGAL_config.h
@@ -1,6 +1,6 @@
---- include/CGAL/config.h.orig	2015-05-14 09:38:12 UTC
+--- include/CGAL/config.h.orig	2016-07-05 08:44:07 UTC
 +++ include/CGAL/config.h
-@@ -255,7 +255,8 @@
+@@ -296,7 +296,8 @@
     || defined(__x86_64) || defined(__x86_64__) \
     || defined(__ia64) || defined(__ia64__) \
     || defined(_M_IX86) || defined(_M_IA64) \
diff --git a/math/cgal/files/patch-src_CMakeLists.txt b/math/cgal/files/patch-src_CMakeLists.txt
deleted file mode 100644
index 0b164c96cedb..000000000000
--- a/math/cgal/files/patch-src_CMakeLists.txt
+++ /dev/null
@@ -1,24 +0,0 @@
-commit 61e61220eb43ea8c3d4a6ebd84d44b0510d8533d
-Author: Philipp Möller <bootsarehax@gmail.com>
-Date:   Mon Jun 22 11:14:04 2015 +0200
-
-    Use get_filename_component to manipulate paths
-
-    This caused a bug in CMake>=3.3.0 when file(GLOB) is not adding multiple
-    slashes. The lack of trailing slashes is guaranteed and documented in
-    get_filename_component.
-
---- src/CMakeLists.txt
-+++ src/CMakeLists.txt
-@@ -117,8 +117,9 @@ set(CGAL_CONFIGURED_LIBRARIES "")
- foreach(package ${CGAL_CONFIGURED_PACKAGES}) 
-   file(GLOB CONFIGURED_LIBS_IN_PACKAGE ${package}/src/CGAL_*/CMakeLists.txt)
-   foreach (libconfigfile ${CONFIGURED_LIBS_IN_PACKAGE})
--    string(REPLACE "${package}/src/" "" libconfigfile ${libconfigfile})
--    string(REPLACE "//CMakeLists.txt" "" CGAL_CONFIGURED_LIBRARY_NAME ${libconfigfile})
-+    get_filename_component(CGAL_CONFIGURED_LIBRARY_NAME ${libconfigfile} DIRECTORY)
-+    get_filename_component(CGAL_CONFIGURED_LIBRARY_NAME ${CGAL_CONFIGURED_LIBRARY_NAME} NAME)
-+
-     if (NOT ${CGAL_CONFIGURED_LIBRARY_NAME} STREQUAL "CGAL")
- 
-      message(STATUS "Sources for CGAL component library '${CGAL_CONFIGURED_LIBRARY_NAME}' detected")
diff --git a/math/cgal/pkg-plist b/math/cgal/pkg-plist
index bbf9b8bd6010..90a1b37e382d 100644
--- a/math/cgal/pkg-plist
+++ b/math/cgal/pkg-plist
@@ -1,6 +1,7 @@
 bin/cgal_create_CMakeLists
 bin/cgal_create_cmake_script
 bin/cgal_make_macosx_app
+include/CGAL/AABB_C3T3_triangle_primitive.h
 include/CGAL/AABB_face_graph_triangle_primitive.h
 include/CGAL/AABB_halfedge_graph_segment_primitive.h
 include/CGAL/AABB_intersections.h
@@ -12,6 +13,9 @@ include/CGAL/AABB_segment_primitive.h
 include/CGAL/AABB_traits.h
 include/CGAL/AABB_tree.h
 include/CGAL/AABB_triangle_primitive.h
+include/CGAL/Advancing_front_surface_reconstruction.h
+include/CGAL/Advancing_front_surface_reconstruction_cell_base_3.h
+include/CGAL/Advancing_front_surface_reconstruction_vertex_base_3.h
 include/CGAL/Aff_transformation_2.h
 include/CGAL/Aff_transformation_3.h
 include/CGAL/Algebraic_extension_traits.h
@@ -145,6 +149,7 @@ include/CGAL/Arr_curve_data_traits_2.h
 include/CGAL/Arr_dcel_base.h
 include/CGAL/Arr_default_dcel.h
 include/CGAL/Arr_default_overlay_traits.h
+include/CGAL/Arr_directional_non_caching_segment_basic_traits_2.h
 include/CGAL/Arr_enums.h
 include/CGAL/Arr_extended_dcel.h
 include/CGAL/Arr_face_index_map.h
@@ -165,6 +170,8 @@ include/CGAL/Arr_geometry_traits/Conic_x_monotone_arc_2.h
 include/CGAL/Arr_geometry_traits/Consolidated_curve_data_aux.h
 include/CGAL/Arr_geometry_traits/Curve_data_aux.h
 include/CGAL/Arr_geometry_traits/Hyperbolic_arc_2.h
+include/CGAL/Arr_geometry_traits/IO/Polycurve_2_iostream.h
+include/CGAL/Arr_geometry_traits/Polycurve_2.h
 include/CGAL/Arr_geometry_traits/Polyline_2.h
 include/CGAL/Arr_geometry_traits/Rational_arc_2.h
 include/CGAL/Arr_geometry_traits/Segment_assertions.h
@@ -214,6 +221,8 @@ include/CGAL/Arr_point_location/Trapezoidal_decomposition_2_impl.h
 include/CGAL/Arr_point_location/Trapezoidal_decomposition_2_iostream.h
 include/CGAL/Arr_point_location/Trapezoidal_decomposition_2_misc.h
 include/CGAL/Arr_point_location_result.h
+include/CGAL/Arr_polycurve_basic_traits_2.h
+include/CGAL/Arr_polycurve_traits_2.h
 include/CGAL/Arr_polyline_traits_2.h
 include/CGAL/Arr_rat_arc/Algebraic_point_2.h
 include/CGAL/Arr_rat_arc/Base_rational_arc_ds_1.h
@@ -297,6 +306,7 @@ include/CGAL/Barycentric_mapping_parameterizer_3.h
 include/CGAL/Basic_sweep_line_2.h
 include/CGAL/Bbox_2.h
 include/CGAL/Bbox_2_Line_2_intersection.h
+include/CGAL/Bbox_2_Line_2_intersection_impl.h
 include/CGAL/Bbox_2_Ray_2_intersection.h
 include/CGAL/Bbox_2_intersection.h
 include/CGAL/Bbox_3.h
@@ -346,24 +356,32 @@ include/CGAL/CGAL_Ipelet_base_v6.h
 include/CGAL/CGAL_Ipelet_base_v7.h
 include/CGAL/CORE/BigFloat.h
 include/CGAL/CORE/BigFloatRep.h
+include/CGAL/CORE/BigFloat_impl.h
 include/CGAL/CORE/BigInt.h
 include/CGAL/CORE/BigRat.h
 include/CGAL/CORE/CORE.h
 include/CGAL/CORE/Config.h
 include/CGAL/CORE/CoreAux.h
+include/CGAL/CORE/CoreAux_impl.h
 include/CGAL/CORE/CoreDefs.h
+include/CGAL/CORE/CoreDefs_impl.h
+include/CGAL/CORE/CoreIO_impl.h
 include/CGAL/CORE/Expr.h
 include/CGAL/CORE/ExprRep.h
+include/CGAL/CORE/Expr_impl.h
 include/CGAL/CORE/Filter.h
 include/CGAL/CORE/Gmp.h
+include/CGAL/CORE/Gmp_impl.h
 include/CGAL/CORE/Impl.h
 include/CGAL/CORE/MemoryPool.h
 include/CGAL/CORE/Promote.h
 include/CGAL/CORE/Real.h
 include/CGAL/CORE/RealRep.h
+include/CGAL/CORE/Real_impl.h
 include/CGAL/CORE/RefCount.h
 include/CGAL/CORE/Timer.h
 include/CGAL/CORE/extLong.h
+include/CGAL/CORE/extLong_impl.h
 include/CGAL/CORE/geom2d/circle2d.h
 include/CGAL/CORE/geom2d/line2d.h
 include/CGAL/CORE/geom2d/point2d.h
@@ -507,6 +525,7 @@ include/CGAL/Combinatorial_map_insertions.h
 include/CGAL/Combinatorial_map_iterators_base.h
 include/CGAL/Combinatorial_map_min_items.h
 include/CGAL/Combinatorial_map_operations.h
+include/CGAL/Combinatorial_map_save_load.h
 include/CGAL/Combinatorial_map_storages.h
 include/CGAL/Compact_container.h
 include/CGAL/Compact_mesh_cell_base_3.h
@@ -522,9 +541,11 @@ include/CGAL/ConicHPA2.h
 include/CGAL/Conic_2.h
 include/CGAL/Conic_misc.h
 include/CGAL/Constrained_Delaunay_triangulation_2.h
+include/CGAL/Constrained_Delaunay_triangulation_face_base_2.h
 include/CGAL/Constrained_triangulation_2.h
 include/CGAL/Constrained_triangulation_face_base_2.h
 include/CGAL/Constrained_triangulation_plus_2.h
+include/CGAL/Constrained_voronoi_diagram_2.h
 include/CGAL/Constraint_hierarchy_2.h
 include/CGAL/Convertible_circulator_project.h
 include/CGAL/Convertible_filter_iterator.h
@@ -580,7 +601,6 @@ include/CGAL/Curved_kernel_via_analysis_2/Generic_point_2.h
 include/CGAL/Curved_kernel_via_analysis_2/Make_x_monotone_2.h
 include/CGAL/Curved_kernel_via_analysis_2/Non_x_monotone_arc_2.h
 include/CGAL/Curved_kernel_via_analysis_2/Point_2.h
-include/CGAL/Curved_kernel_via_analysis_2/Qt_widget_Curve_renderer_2.h
 include/CGAL/Curved_kernel_via_analysis_2/Sweep_curves_adapter_2.h
 include/CGAL/Curved_kernel_via_analysis_2/gfx/Curve_renderer_2.h
 include/CGAL/Curved_kernel_via_analysis_2/gfx/Curve_renderer_internals.h
@@ -592,7 +612,7 @@ include/CGAL/Dart.h
 include/CGAL/Dart_const_iterators.h
 include/CGAL/Dart_iterators.h
 include/CGAL/Default.h
-include/CGAL/Deform_mesh.h
+include/CGAL/Default_diagonalize_traits.h
 include/CGAL/Deformation_Eigen_closest_rotation_traits_3.h
 include/CGAL/Deformation_Eigen_polar_closest_rotation_traits_3.h
 include/CGAL/Delaunay_d.h
@@ -601,6 +621,7 @@ include/CGAL/Delaunay_mesh_criteria_2.h
 include/CGAL/Delaunay_mesh_face_base_2.h
 include/CGAL/Delaunay_mesh_local_size_criteria_2.h
 include/CGAL/Delaunay_mesh_size_criteria_2.h
+include/CGAL/Delaunay_mesh_vertex_base_2.h
 include/CGAL/Delaunay_mesher_2.h
 include/CGAL/Delaunay_mesher_no_edge_refinement_2.h
 include/CGAL/Delaunay_triangulation.h
@@ -610,6 +631,7 @@ include/CGAL/Delaunay_triangulation_adaptation_policies_2.h
 include/CGAL/Delaunay_triangulation_adaptation_traits_2.h
 include/CGAL/Delaunay_triangulation_cell_base_3.h
 include/CGAL/Delaunay_triangulation_cell_base_with_circumcenter_3.h
+include/CGAL/Diagonalize_traits.h
 include/CGAL/Dimension.h
 include/CGAL/Direction_2.h
 include/CGAL/Direction_3.h
@@ -620,6 +642,7 @@ include/CGAL/Double_map.h
 include/CGAL/Dummy_tds_2.h
 include/CGAL/Dynamic_matrix.h
 include/CGAL/Edge_hash_function.h
+include/CGAL/Eigen_diagonalize_traits.h
 include/CGAL/Eigen_matrix.h
 include/CGAL/Eigen_solver_traits.h
 include/CGAL/Eigen_svd.h
@@ -650,6 +673,8 @@ include/CGAL/Euler_integrator_2.h
 include/CGAL/Exact_circular_kernel_2.h
 include/CGAL/Exact_integer.h
 include/CGAL/Exact_predicates_exact_constructions_kernel.h
+include/CGAL/Exact_predicates_exact_constructions_kernel_with_kth_root.h
+include/CGAL/Exact_predicates_exact_constructions_kernel_with_root_of.h
 include/CGAL/Exact_predicates_exact_constructions_kernel_with_sqrt.h
 include/CGAL/Exact_predicates_inexact_constructions_kernel.h
 include/CGAL/Exact_rational.h
@@ -663,6 +688,7 @@ include/CGAL/FPU_extension.h
 include/CGAL/FPU_gcc_i386.h
 include/CGAL/FPU_gcc_i386_sse2.h
 include/CGAL/FPU_msvc.h
+include/CGAL/FaceGraph_to_Polyhedron_3.h
 include/CGAL/Filter_circulator.h
 include/CGAL/Filtered_bbox_circular_kernel_2.h
 include/CGAL/Filtered_bbox_circular_kernel_2/bbox_filtered_predicates.h
@@ -706,6 +732,7 @@ include/CGAL/Gmpzf.h
 include/CGAL/Gps_circle_segment_traits_2.h
 include/CGAL/Gps_segment_traits_2.h
 include/CGAL/Gps_traits_2.h
+include/CGAL/Gray_image_mesh_domain_3.h
 include/CGAL/Gray_level_image_3.h
 include/CGAL/HalfedgeDS_const_decorator.h
 include/CGAL/HalfedgeDS_decorator.h
@@ -744,6 +771,7 @@ include/CGAL/Hilbert_sort_middle_2.h
 include/CGAL/Hilbert_sort_middle_3.h
 include/CGAL/Hilbert_sort_middle_base.h
 include/CGAL/Hilbert_sort_middle_d.h
+include/CGAL/Hilbert_sort_on_sphere_3.h
 include/CGAL/Homogeneous.h
 include/CGAL/Homogeneous/Aff_transformationH2.h
 include/CGAL/Homogeneous/Aff_transformationH3.h
@@ -776,7 +804,6 @@ include/CGAL/Hyperbola_2.h
 include/CGAL/Hyperbola_ray_2.h
 include/CGAL/Hyperbola_segment_2.h
 include/CGAL/IEEE_754_unions.h
-include/CGAL/IO/binary_file_io.h
 include/CGAL/IO/Alpha_shape_3_VRML_2_ostream.h
 include/CGAL/IO/Arr_iostream.h
 include/CGAL/IO/Arr_text_formatter.h
@@ -787,11 +814,11 @@ include/CGAL/IO/Arr_with_history_text_formatter.h
 include/CGAL/IO/Arrangement_2_reader.h
 include/CGAL/IO/Arrangement_2_writer.h
 include/CGAL/IO/Color.h
+include/CGAL/IO/Color_impl.h
 include/CGAL/IO/Complex_2_in_triangulation_3_file_writer.h
 include/CGAL/IO/Complex_2_in_triangulation_3_polyhedron_builder.h
 include/CGAL/IO/Complex_2_in_triangulation_3_to_vtk.h
 include/CGAL/IO/Complex_3_in_triangulation_3_to_vtk.h
-include/CGAL/IO/Custom_zoom_layer.h
 include/CGAL/IO/Dxf_bsop_reader.h
 include/CGAL/IO/Dxf_reader.h
 include/CGAL/IO/Dxf_reader_doubles.h
@@ -800,24 +827,32 @@ include/CGAL/IO/Dxf_variant_reader.h
 include/CGAL/IO/Dxf_writer.h
 include/CGAL/IO/Fig_stream.h
 include/CGAL/IO/Fig_stream_Conic_arc_2.h
+include/CGAL/IO/File_avizo.h
 include/CGAL/IO/File_binary_mesh_3.h
 include/CGAL/IO/File_header_OFF.h
+include/CGAL/IO/File_header_OFF_impl.h
 include/CGAL/IO/File_header_extended_OFF.h
+include/CGAL/IO/File_header_extended_OFF_impl.h
 include/CGAL/IO/File_maya.h
 include/CGAL/IO/File_medit.h
 include/CGAL/IO/File_poly.h
 include/CGAL/IO/File_scanner_OFF.h
+include/CGAL/IO/File_scanner_OFF_impl.h
 include/CGAL/IO/File_tetgen.h
 include/CGAL/IO/File_writer_OFF.h
+include/CGAL/IO/File_writer_OFF_impl.h
 include/CGAL/IO/File_writer_VRML_2.h
+include/CGAL/IO/File_writer_VRML_2_impl.h
 include/CGAL/IO/File_writer_inventor.h
+include/CGAL/IO/File_writer_inventor_impl.h
 include/CGAL/IO/File_writer_wavefront.h
+include/CGAL/IO/File_writer_wavefront_impl.h
 include/CGAL/IO/Generic_writer.h
 include/CGAL/IO/Geomview_stream.h
+include/CGAL/IO/Geomview_stream_impl.h
 include/CGAL/IO/Gps_iostream.h
 include/CGAL/IO/Inventor_ostream.h
 include/CGAL/IO/Istream_iterator.h
-include/CGAL/IO/Navigation_layer.h
 include/CGAL/IO/Nef_polyhedron_2_PS_stream.h
 include/CGAL/IO/Nef_polyhedron_S2_OGLUT_stream.h
 include/CGAL/IO/Nef_polyhedron_iostream_3.h
@@ -831,44 +866,6 @@ include/CGAL/IO/Polyhedron_geomview_ostream.h
 include/CGAL/IO/Polyhedron_inventor_ostream.h
 include/CGAL/IO/Polyhedron_iostream.h
 include/CGAL/IO/Polyhedron_scan_OFF.h
-include/CGAL/IO/Qt_help_window.h
-include/CGAL/IO/Qt_widget.h
-include/CGAL/IO/Qt_widget_Alpha_shape_2.h
-include/CGAL/IO/Qt_widget_Apollonius_site_2.h
-include/CGAL/IO/Qt_widget_Conic_2.h
-include/CGAL/IO/Qt_widget_Conic_arc_2.h
-include/CGAL/IO/Qt_widget_Constrained_triangulation_2.h
-include/CGAL/IO/Qt_widget_Delaunay_triangulation_2.h
-include/CGAL/IO/Qt_widget_Hyperbola_2.h
-include/CGAL/IO/Qt_widget_Linear_object_2.h
-include/CGAL/IO/Qt_widget_Min_ellipse_2.h
-include/CGAL/IO/Qt_widget_Nef_2.h
-include/CGAL/IO/Qt_widget_Nef_3.h
-include/CGAL/IO/Qt_widget_Nef_S2.h
-include/CGAL/IO/Qt_widget_OpenGL.h
-include/CGAL/IO/Qt_widget_Optimisation_circle_2.h
-include/CGAL/IO/Qt_widget_Optimisation_ellipse_2.h
-include/CGAL/IO/Qt_widget_Polygon_2.h
-include/CGAL/IO/Qt_widget_Polyline_2.h
-include/CGAL/IO/Qt_widget_Regular_triangulation_2.h
-include/CGAL/IO/Qt_widget_Triangulation_2.h
-include/CGAL/IO/Qt_widget_circular_arc_2.h
-include/CGAL/IO/Qt_widget_circular_arc_endpoint_2.h
-include/CGAL/IO/Qt_widget_focus.h
-include/CGAL/IO/Qt_widget_get_circle.h
-include/CGAL/IO/Qt_widget_get_iso_rectangle.h
-include/CGAL/IO/Qt_widget_get_line.h
-include/CGAL/IO/Qt_widget_get_point.h
-include/CGAL/IO/Qt_widget_get_polygon.h
-include/CGAL/IO/Qt_widget_get_segment.h
-include/CGAL/IO/Qt_widget_get_simple_polygon.h
-include/CGAL/IO/Qt_widget_handtool.h
-include/CGAL/IO/Qt_widget_history.h
-include/CGAL/IO/Qt_widget_layer.h
-include/CGAL/IO/Qt_widget_rotation_layer.h
-include/CGAL/IO/Qt_widget_show_mouse_coordinates.h
-include/CGAL/IO/Qt_widget_standard_toolbar.h
-include/CGAL/IO/Qt_widget_zoomrect.h
 include/CGAL/IO/STL_reader.h
 include/CGAL/IO/Scanner_OFF.h
 include/CGAL/IO/Tee_for_output_iterator.h
@@ -880,63 +877,31 @@ include/CGAL/IO/VRML_2_ostream.h
 include/CGAL/IO/Verbose_ostream.h
 include/CGAL/IO/Writer_OFF.h
 include/CGAL/IO/alpha_shape_geomview_ostream_3.h
+include/CGAL/IO/binary_file_io.h
 include/CGAL/IO/generic_copy_OFF.h
 include/CGAL/IO/generic_print_polyhedron.h
 include/CGAL/IO/io.h
+include/CGAL/IO/io_impl.h
 include/CGAL/IO/io_tags.h
 include/CGAL/IO/output_surface_facets_to_polyhedron.h
 include/CGAL/IO/output_surface_facets_to_triangle_soup.h
-include/CGAL/IO/pixmaps/alpha_shape.xpm
-include/CGAL/IO/pixmaps/arrow.xpm
-include/CGAL/IO/pixmaps/back.xpm
-include/CGAL/IO/pixmaps/circle.xpm
-include/CGAL/IO/pixmaps/constrained.xpm
-include/CGAL/IO/pixmaps/demoicon.xpm
-include/CGAL/IO/pixmaps/focus.xpm
-include/CGAL/IO/pixmaps/focus1.xpm
-include/CGAL/IO/pixmaps/focus1_mask.xpm
-include/CGAL/IO/pixmaps/focus2.xpm
-include/CGAL/IO/pixmaps/focus2_mask.xpm
-include/CGAL/IO/pixmaps/focus3.xpm
-include/CGAL/IO/pixmaps/focus3_mask.xpm
-include/CGAL/IO/pixmaps/forward.xpm
-include/CGAL/IO/pixmaps/greene_approx.xpm
-include/CGAL/IO/pixmaps/hand.xpm
-include/CGAL/IO/pixmaps/handtool.xpm
-include/CGAL/IO/pixmaps/holddown.xpm
-include/CGAL/IO/pixmaps/iso_rectangle.xpm
-include/CGAL/IO/pixmaps/line.xpm
-include/CGAL/IO/pixmaps/min_parallelogram.xpm
-include/CGAL/IO/pixmaps/min_rectangle.xpm
-include/CGAL/IO/pixmaps/mouse_coord.xpm
-include/CGAL/IO/pixmaps/movepoint.xpm
-include/CGAL/IO/pixmaps/nearest_vertex.xpm
-include/CGAL/IO/pixmaps/notool.xpm
-include/CGAL/IO/pixmaps/optimal_convex.xpm
-include/CGAL/IO/pixmaps/point.xpm
-include/CGAL/IO/pixmaps/points.xpm
-include/CGAL/IO/pixmaps/polygon.xpm
-include/CGAL/IO/pixmaps/rotation.xpm
-include/CGAL/IO/pixmaps/show_polygon.xpm
-include/CGAL/IO/pixmaps/triangulation.xpm
-include/CGAL/IO/pixmaps/voronoi.xpm
-include/CGAL/IO/pixmaps/ymonotone.xpm
-include/CGAL/IO/pixmaps/zoom_in.xpm
-include/CGAL/IO/pixmaps/zoom_in_rect.xpm
-include/CGAL/IO/pixmaps/zoom_out.xpm
 include/CGAL/IO/print_OFF.h
 include/CGAL/IO/print_VRML_1.h
 include/CGAL/IO/print_VRML_2.h
 include/CGAL/IO/print_inventor.h
 include/CGAL/IO/print_wavefront.h
 include/CGAL/IO/read_off_points.h
+include/CGAL/IO/read_ply_points.h
 include/CGAL/IO/read_xyz_points.h
 include/CGAL/IO/scan_OFF.h
 include/CGAL/IO/write_off_points.h
+include/CGAL/IO/write_ply_points.h
 include/CGAL/IO/write_xyz_points.h
 include/CGAL/Identity_policy_2.h
 include/CGAL/ImageIO.h
+include/CGAL/ImageIO_impl.h
 include/CGAL/Image_3.h
+include/CGAL/Image_3_impl.h
 include/CGAL/Image_3_vtk_interface.h
 include/CGAL/Implicit_mesh_domain_3.h
 include/CGAL/Implicit_surface_3.h
@@ -952,6 +917,7 @@ include/CGAL/Intersection_traits_3.h
 include/CGAL/Intersections_2/Triangle_2_Triangle_2_intersection_impl.h
 include/CGAL/Intersections_3/intersection_3_1_impl.h
 include/CGAL/Interval_arithmetic.h
+include/CGAL/Interval_arithmetic_impl.h
 include/CGAL/Interval_nt.h
 include/CGAL/Interval_skip_list.h
 include/CGAL/Interval_skip_list_interval.h
@@ -1071,15 +1037,6 @@ include/CGAL/Kinetic/Exact_simulation_traits.h
 include/CGAL/Kinetic/Free_event_base.h
 include/CGAL/Kinetic/Handle_degeneracy_function_kernel.h
 include/CGAL/Kinetic/Heap_pointer_event_queue.h
-include/CGAL/Kinetic/IO/Qt_moving_points_2.h
-include/CGAL/Kinetic/IO/Qt_triangulation_2.h
-include/CGAL/Kinetic/IO/Qt_widget_2.h
-include/CGAL/Kinetic/IO/internal/GUI_base.h
-include/CGAL/Kinetic/IO/internal/Qt_core.h
-include/CGAL/Kinetic/IO/internal/Qt_timer.h
-include/CGAL/Kinetic/IO/internal/Qt_widget_2_core.h
-include/CGAL/Kinetic/IO/internal/Qt_window_2.h
-include/CGAL/Kinetic/IO/internal/pixmaps.h
 include/CGAL/Kinetic/Inexact_simulation_traits.h
 include/CGAL/Kinetic/Insert_event.h
 include/CGAL/Kinetic/Listener.h
@@ -1121,6 +1078,7 @@ include/CGAL/Kinetic/internal/To_static.h
 include/CGAL/Kinetic/internal/Triangulation_helper_3.h
 include/CGAL/Kinetic/internal/config.h
 include/CGAL/Kinetic/internal/debug_counters.h
+include/CGAL/Kinetic/internal/debug_counters_impl.h
 include/CGAL/Kinetic/internal/infinity_or_max.h
 include/CGAL/Kinetic/internal/tds_2_helpers.h
 include/CGAL/Kinetic/internal/triangulation_helpers_3.h
@@ -1130,7 +1088,7 @@ include/CGAL/LEDA_basic.h
 include/CGAL/LSCM_parameterizer_3.h
 include/CGAL/Labeled_image_mesh_domain_3.h
 include/CGAL/Labeled_mesh_domain_3.h
-include/CGAL/Lapack/Linear_algebra_lapack.h
+include/CGAL/Lapack_svd.h
 include/CGAL/Largest_empty_iso_rectangle_2.h
 include/CGAL/Lazy.h
 include/CGAL/Lazy_exact_nt.h
@@ -1164,16 +1122,24 @@ include/CGAL/MP_Float_impl.h
 include/CGAL/Manhattan_distance_iso_box_point.h
 include/CGAL/Marching_tetrahedra_observer_default_3.h
 include/CGAL/Marching_tetrahedra_traits_skin_surface_3.h
+include/CGAL/Mean_curvature_flow_skeletonization.h
 include/CGAL/Mean_value_coordinates_parameterizer_3.h
 include/CGAL/Memory_sizer.h
 include/CGAL/Mesh_2/Clusters.h
 include/CGAL/Mesh_2/Do_not_refine_edges.h
 include/CGAL/Mesh_2/Face_badness.h
+include/CGAL/Mesh_2/Lipschitz_sizing_field_2.h
+include/CGAL/Mesh_2/Lloyd_move_2.h
+include/CGAL/Mesh_2/Mesh_global_optimizer_2.h
+include/CGAL/Mesh_2/Mesh_sizing_field.h
 include/CGAL/Mesh_2/Output_stream.h
+include/CGAL/Mesh_2/README
 include/CGAL/Mesh_2/Refine_edges.h
 include/CGAL/Mesh_2/Refine_edges_visitor.h
 include/CGAL/Mesh_2/Refine_edges_with_clusters.h
 include/CGAL/Mesh_2/Refine_faces.h
+include/CGAL/Mesh_2/Sizing_field_2.h
+include/CGAL/Mesh_2/Uniform_sizing_field_2.h
 include/CGAL/Mesh_3/C3T3_helpers.h
 include/CGAL/Mesh_3/Cell_criteria_visitor_with_balls.h
 include/CGAL/Mesh_3/Concurrent_mesher_config.h
@@ -1209,6 +1175,7 @@ include/CGAL/Mesh_3/Profiling_tools.h
 include/CGAL/Mesh_3/Protect_edges_sizing_field.h
 include/CGAL/Mesh_3/Refine_cells_3.h
 include/CGAL/Mesh_3/Refine_facets_3.h
+include/CGAL/Mesh_3/Refine_facets_manifold_base.h
 include/CGAL/Mesh_3/Refine_tets_visitor.h
 include/CGAL/Mesh_3/Robust_intersection_kernel.h
 include/CGAL/Mesh_3/Robust_intersection_traits_3.h
@@ -1232,6 +1199,7 @@ include/CGAL/Mesh_3/mesh_standard_facet_criteria.h
 include/CGAL/Mesh_3/min_dihedral_angle.h
 include/CGAL/Mesh_3/parameters_defaults.h
 include/CGAL/Mesh_3/polyhedral_to_labeled_function_wrapper.h
+include/CGAL/Mesh_3/polylines_to_protect.h
 include/CGAL/Mesh_3/radius_ratio.h
 include/CGAL/Mesh_3/sliver_criteria.h
 include/CGAL/Mesh_3/squared_distance_Point_3_Triangle_3.h
@@ -1298,11 +1266,19 @@ include/CGAL/Min_sphere_of_spheres_d_traits_2.h
 include/CGAL/Min_sphere_of_spheres_d_traits_3.h
 include/CGAL/Min_sphere_of_spheres_d_traits_d.h
 include/CGAL/Minimum_enclosing_quadrilateral_traits_2.h
+include/CGAL/Minkowski_sum_2/AABB_collision_detector_2.h
+include/CGAL/Minkowski_sum_2/AABB_node_with_join.h
+include/CGAL/Minkowski_sum_2/AABB_segment_2_primitive.h
+include/CGAL/Minkowski_sum_2/AABB_traits_2.h
+include/CGAL/Minkowski_sum_2/AABB_traversal_traits_with_join.h
+include/CGAL/Minkowski_sum_2/AABB_tree_with_join.h
 include/CGAL/Minkowski_sum_2/Approx_offset_base_2.h
 include/CGAL/Minkowski_sum_2/Arr_labeled_traits_2.h
 include/CGAL/Minkowski_sum_2/Decomposition_strategy_adapter.h
 include/CGAL/Minkowski_sum_2/Exact_offset_base_2.h
+include/CGAL/Minkowski_sum_2/Hole_filter_2.h
 include/CGAL/Minkowski_sum_2/Labels.h
+include/CGAL/Minkowski_sum_2/Minkowski_sum_by_reduced_convolution_2.h
 include/CGAL/Minkowski_sum_2/Minkowski_sum_conv_2.h
 include/CGAL/Minkowski_sum_2/Minkowski_sum_decomp_2.h
 include/CGAL/Minkowski_sum_2/Offset_conv_2.h
@@ -1343,12 +1319,12 @@ include/CGAL/Nef_2/PM_overlayer.h
 include/CGAL/Nef_2/PM_persistent_PL.h
 include/CGAL/Nef_2/PM_point_locator.h
 include/CGAL/Nef_2/Polynomial.h
+include/CGAL/Nef_2/Polynomial_impl.h
 include/CGAL/Nef_2/Segment_overlay_traits.h
 include/CGAL/Nef_2/debug.h
 include/CGAL/Nef_2/gen_point_location.h
 include/CGAL/Nef_2/geninfo.h
 include/CGAL/Nef_2/iterator_tools.h
-include/CGAL/Nef_3/binop_intersection_tests.h
 include/CGAL/Nef_3/Binary_operation.h
 include/CGAL/Nef_3/Bounding_box_3.h
 include/CGAL/Nef_3/Combine_with_halfspace.h
@@ -1387,12 +1363,12 @@ include/CGAL/Nef_3/SNC_iteration.h
 include/CGAL/Nef_3/SNC_k3_tree_traits.h
 include/CGAL/Nef_3/SNC_list.h
 include/CGAL/Nef_3/SNC_point_locator.h
-include/CGAL/Nef_3/SNC_ray_shooter.h
 include/CGAL/Nef_3/SNC_simplify.h
 include/CGAL/Nef_3/SNC_sphere_map.h
 include/CGAL/Nef_3/SNC_structure.h
 include/CGAL/Nef_3/Vertex.h
 include/CGAL/Nef_3/Volume.h
+include/CGAL/Nef_3/binop_intersection_tests.h
 include/CGAL/Nef_3/bounded_side_3.h
 include/CGAL/Nef_3/polyhedron_3_to_nef_3.h
 include/CGAL/Nef_3/quotient_coordinates_to_homogeneous_point.h
@@ -1489,6 +1465,12 @@ include/CGAL/Null_matrix.h
 include/CGAL/Number_type_checker.h
 include/CGAL/Number_types/internal_functions_comparison_root_of_2.h
 include/CGAL/OFF_to_nef_3.h
+include/CGAL/OTR_2/Cost.h
+include/CGAL/OTR_2/Reconstruction_edge_2.h
+include/CGAL/OTR_2/Reconstruction_face_base_2.h
+include/CGAL/OTR_2/Reconstruction_triangulation_2.h
+include/CGAL/OTR_2/Reconstruction_vertex_base_2.h
+include/CGAL/OTR_2/Sample.h
 include/CGAL/Object.h
 include/CGAL/OpenNL/bicgstab.h
 include/CGAL/OpenNL/blas.h
@@ -1497,6 +1479,7 @@ include/CGAL/OpenNL/full_vector.h
 include/CGAL/OpenNL/linear_solver.h
 include/CGAL/OpenNL/preconditioner.h
 include/CGAL/OpenNL/sparse_matrix.h
+include/CGAL/Optimal_transportation_reconstruction_2.h
 include/CGAL/Optimisation/Access_coordinates_begin_2.h
 include/CGAL/Optimisation/Access_coordinates_begin_3.h
 include/CGAL/Optimisation/Access_coordinates_begin_d.h
@@ -1512,7 +1495,9 @@ include/CGAL/Optimisation/debug.h
 include/CGAL/Optimisation_d_traits_2.h
 include/CGAL/Optimisation_d_traits_3.h
 include/CGAL/Optimisation_d_traits_d.h
+include/CGAL/Orientation_Linf_2.h
 include/CGAL/Origin.h
+include/CGAL/Origin_impl.h
 include/CGAL/Orthogonal_incremental_neighbor_search.h
 include/CGAL/Orthogonal_k_neighbor_search.h
 include/CGAL/PCA_util.h
@@ -1568,6 +1553,10 @@ include/CGAL/Periodic_2_triangulation_statically_filtered_traits_2.h
 include/CGAL/Periodic_2_triangulation_traits_2.h
 include/CGAL/Periodic_2_triangulation_vertex_base_2.h
 include/CGAL/Periodic_3_Delaunay_triangulation_3.h
+include/CGAL/Periodic_3_Delaunay_triangulation_filtered_traits_3.h
+include/CGAL/Periodic_3_Delaunay_triangulation_statically_filtered_traits_3.h
+include/CGAL/Periodic_3_Delaunay_triangulation_traits_3.h
+include/CGAL/Periodic_3_construct_point_3.h
 include/CGAL/Periodic_3_offset_3.h
 include/CGAL/Periodic_3_triangulation_3.h
 include/CGAL/Periodic_3_triangulation_ds_cell_base_3.h
@@ -1590,7 +1579,6 @@ include/CGAL/Point_2_Segment_2_intersection.h
 include/CGAL/Point_2_Triangle_2_intersection.h
 include/CGAL/Point_3.h
 include/CGAL/Point_container.h
-include/CGAL/Point_inside_polyhedron_3.h
 include/CGAL/Point_set_2.h
 include/CGAL/Point_traits.h
 include/CGAL/Point_with_normal_3.h
@@ -1600,6 +1588,7 @@ include/CGAL/Point_with_surface_index_geom_traits.h
 include/CGAL/Poisson_implicit_surface_3.h
 include/CGAL/Poisson_mesh_cell_criteria_3.h
 include/CGAL/Poisson_reconstruction_function.h
+include/CGAL/Polychain_2.h
 include/CGAL/Polygon_2.h
 include/CGAL/Polygon_2/Polygon_2_algorithms_impl.h
 include/CGAL/Polygon_2/Polygon_2_edge_circulator.h
@@ -1610,10 +1599,46 @@ include/CGAL/Polygon_2/Polygon_2_vertex_circulator.h
 include/CGAL/Polygon_2/polygon_assertions.h
 include/CGAL/Polygon_2_algorithms.h
 include/CGAL/Polygon_convex_decomposition_2.h
+include/CGAL/Polygon_mesh_processing/Weights.h
+include/CGAL/Polygon_mesh_processing/bbox.h
+include/CGAL/Polygon_mesh_processing/border.h
+include/CGAL/Polygon_mesh_processing/compute_normal.h
+include/CGAL/Polygon_mesh_processing/connected_components.h
+include/CGAL/Polygon_mesh_processing/distance.h
+include/CGAL/Polygon_mesh_processing/fair.h
+include/CGAL/Polygon_mesh_processing/internal/Hole_filling/Triangulate_hole_polygon_mesh.h
+include/CGAL/Polygon_mesh_processing/internal/Hole_filling/Triangulate_hole_polyline.h
+include/CGAL/Polygon_mesh_processing/internal/Hole_filling/do_not_use_DT3.h
+include/CGAL/Polygon_mesh_processing/internal/Hole_filling/experimental/experimental_code.h
+include/CGAL/Polygon_mesh_processing/internal/Isotropic_remeshing/AABB_filtered_projection_traits.h
+include/CGAL/Polygon_mesh_processing/internal/Isotropic_remeshing/remesh_impl.h
+include/CGAL/Polygon_mesh_processing/internal/Polygon_mesh_slicer/Axis_parallel_plane_traits.h
+include/CGAL/Polygon_mesh_processing/internal/Polygon_mesh_slicer/Traversal_traits.h
+include/CGAL/Polygon_mesh_processing/internal/Side_of_triangle_mesh/AABB_triangle_accessor_3_primitive.h
+include/CGAL/Polygon_mesh_processing/internal/Side_of_triangle_mesh/Point_inside_vertical_ray_cast.h
+include/CGAL/Polygon_mesh_processing/internal/Side_of_triangle_mesh/Ray_3_Triangle_3_traversal_traits.h
+include/CGAL/Polygon_mesh_processing/internal/fair_impl.h
+include/CGAL/Polygon_mesh_processing/internal/named_function_params.h
+include/CGAL/Polygon_mesh_processing/internal/named_params_helper.h
+include/CGAL/Polygon_mesh_processing/internal/refine_impl.h
+include/CGAL/Polygon_mesh_processing/measure.h
+include/CGAL/Polygon_mesh_processing/orient_polygon_soup.h
+include/CGAL/Polygon_mesh_processing/orientation.h
+include/CGAL/Polygon_mesh_processing/polygon_soup_to_polygon_mesh.h
+include/CGAL/Polygon_mesh_processing/refine.h
+include/CGAL/Polygon_mesh_processing/remesh.h
+include/CGAL/Polygon_mesh_processing/repair.h
+include/CGAL/Polygon_mesh_processing/self_intersections.h
+include/CGAL/Polygon_mesh_processing/stitch_borders.h
+include/CGAL/Polygon_mesh_processing/triangulate_faces.h
+include/CGAL/Polygon_mesh_processing/triangulate_hole.h
+include/CGAL/Polygon_mesh_slicer.h
 include/CGAL/Polygon_offset_builder_2.h
 include/CGAL/Polygon_offset_builder_traits_2.h
 include/CGAL/Polygon_set_2.h
 include/CGAL/Polygon_traits_2.h
+include/CGAL/Polygon_triangulation_decomposition_2.h
+include/CGAL/Polygon_vertical_decomposition_2.h
 include/CGAL/Polygon_with_holes_2.h
 include/CGAL/PolyhedralSurf_neighbors.h
 include/CGAL/Polyhedral_mesh_domain_3.h
@@ -1625,8 +1650,6 @@ include/CGAL/Polyhedron_incremental_builder_3.h
 include/CGAL/Polyhedron_items_3.h
 include/CGAL/Polyhedron_items_with_id_3.h
 include/CGAL/Polyhedron_min_items_3.h
-include/CGAL/Polyhedron_slicer_3.h
-include/CGAL/Polyhedron_stitching.h
 include/CGAL/Polyhedron_traits_3.h
 include/CGAL/Polyhedron_traits_with_normals_3.h
 include/CGAL/Polyline_constraint_hierarchy_2.h
@@ -1696,6 +1719,7 @@ include/CGAL/Polynomial/internal/Filtered_rational/Filtered_standard_sequence.h
 include/CGAL/Polynomial/internal/Fixed_polynomial_impl.h
 include/CGAL/Polynomial/internal/GSL_numeric_solver.h
 include/CGAL/Polynomial/internal/Isolating_interval.h
+include/CGAL/Polynomial/internal/JAMA_numeric_solvers_impl.h
 include/CGAL/Polynomial/internal/Kernel/Is_even_multiplicity.h
 include/CGAL/Polynomial/internal/Kernel/Is_rational.h
 include/CGAL/Polynomial/internal/Kernel/Isolating_interval.h
@@ -1750,6 +1774,7 @@ include/CGAL/Polynomial/internal/Simple_interval_root.h
 include/CGAL/Polynomial/internal/Statistics.h
 include/CGAL/Polynomial/internal/Sturm_isolating_interval.h
 include/CGAL/Polynomial/internal/Sturm_root_rep.h
+include/CGAL/Polynomial/internal/Turkowski_numeric_solvers_impl.h
 include/CGAL/Polynomial/internal/config.h
 include/CGAL/Polynomial/internal/filtered_function_leaf_nodes.h
 include/CGAL/Polynomial/internal/filtered_function_node_bases.h
@@ -1758,7 +1783,9 @@ include/CGAL/Polynomial/internal/interval_arithmetic.h
 include/CGAL/Polynomial/internal/macros.h
 include/CGAL/Polynomial/internal/nt_converters.h
 include/CGAL/Polynomial/internal/numeric_solvers.h
+include/CGAL/Polynomial/internal/numeric_solvers_impl.h
 include/CGAL/Polynomial/internal/numeric_solvers_support.h
+include/CGAL/Polynomial/internal/numeric_solvers_support_impl.h
 include/CGAL/Polynomial/internal/polynomial_generators.h
 include/CGAL/Polynomial/misc.h
 include/CGAL/Polynomial/modular_filter.h
@@ -1821,12 +1848,14 @@ include/CGAL/QP_solver/debug.h
 include/CGAL/QP_solver/functors.h
 include/CGAL/Qt/AlphaShapeGraphicsItem.h
 include/CGAL/Qt/ApolloniusGraphGraphicsItem.h
-include/CGAL/Qt/CGAL_Qt4_config.h
+include/CGAL/Qt/CGAL_Qt_config.h
 include/CGAL/Qt/CircularArcGraphicsItem.h
 include/CGAL/Qt/ConstrainedTriangulationGraphicsItem.h
 include/CGAL/Qt/Converter.h
+include/CGAL/Qt/CreateOpenGLContext.h
 include/CGAL/Qt/DelaunayMeshTriangulationGraphicsItem.h
 include/CGAL/Qt/DemosMainWindow.h
+include/CGAL/Qt/DemosMainWindow_impl.h
 include/CGAL/Qt/GraphicsItem.h
 include/CGAL/Qt/GraphicsViewCircleInput.h
 include/CGAL/Qt/GraphicsViewCircularArcInput.h
@@ -1834,9 +1863,11 @@ include/CGAL/Qt/GraphicsViewInput.h
 include/CGAL/Qt/GraphicsViewIsoRectangleInput.h
 include/CGAL/Qt/GraphicsViewLineInput.h
 include/CGAL/Qt/GraphicsViewNavigation.h
+include/CGAL/Qt/GraphicsViewNavigation_impl.h
 include/CGAL/Qt/GraphicsViewPointInput.h
 include/CGAL/Qt/GraphicsViewPolygonWithHolesInput.h
 include/CGAL/Qt/GraphicsViewPolylineInput.h
+include/CGAL/Qt/GraphicsViewPolylineInput_impl.h
 include/CGAL/Qt/LineGraphicsItem.h
 include/CGAL/Qt/PainterOstream.h
 include/CGAL/Qt/PointsGraphicsItem.h
@@ -1849,13 +1880,17 @@ include/CGAL/Qt/RegularGridGraphicsItem.h
 include/CGAL/Qt/RegularGridVectorFieldGraphicsItem.h
 include/CGAL/Qt/RegularTriangulationGraphicsItem.h
 include/CGAL/Qt/SegmentDelaunayGraphGraphicsItem.h
+include/CGAL/Qt/SegmentDelaunayGraphLinfGraphicsItem.h
 include/CGAL/Qt/SegmentsGraphicsItem.h
 include/CGAL/Qt/StreamLinesGraphicsItem.h
 include/CGAL/Qt/TriangulationGraphicsItem.h
 include/CGAL/Qt/VoronoiGraphicsItem.h
 include/CGAL/Qt/debug.h
+include/CGAL/Qt/debug_impl.h
 include/CGAL/Qt/resources.h
+include/CGAL/Qt/resources_impl.h
 include/CGAL/Qt/utility.h
+include/CGAL/Qt/utility_impl.h
 include/CGAL/Quotient.h
 include/CGAL/Quotient_fwd.h
 include/CGAL/RS/Gmpfr_make_unique.h
@@ -1881,6 +1916,7 @@ include/CGAL/Random_access_adaptor.h
 include/CGAL/Random_access_value_adaptor.h
 include/CGAL/Random_convex_hull_traits_2.h
 include/CGAL/Random_convex_set_traits_2.h
+include/CGAL/Random_impl.h
 include/CGAL/Random_polygon_2_sweep.h
 include/CGAL/Random_polygon_traits_2.h
 include/CGAL/Range_segment_tree_traits.h
@@ -1889,6 +1925,7 @@ include/CGAL/Range_tree_k.h
 include/CGAL/Rational_traits.h
 include/CGAL/Ray_2.h
 include/CGAL/Ray_2_Bbox_2_intersection.h
+include/CGAL/Ray_2_Bbox_2_intersection_impl.h
 include/CGAL/Ray_2_Iso_rectangle_2_intersection.h
 include/CGAL/Ray_2_Line_2_intersection.h
 include/CGAL/Ray_2_Point_2_intersection.h
@@ -1898,6 +1935,7 @@ include/CGAL/Ray_2_Triangle_2_intersection.h
 include/CGAL/Ray_3.h
 include/CGAL/Real_embeddable_traits.h
 include/CGAL/Real_timer.h
+include/CGAL/Real_timer_impl.h
 include/CGAL/Reconstruction_triangulation_3.h
 include/CGAL/Rectangular_p_center_traits_2.h
 include/CGAL/Referenced_argument.h
@@ -1913,7 +1951,6 @@ include/CGAL/Regular_triangulation_euclidean_traits_2.h
 include/CGAL/Regular_triangulation_euclidean_traits_3.h
 include/CGAL/Regular_triangulation_face_base_2.h
 include/CGAL/Regular_triangulation_filtered_traits_2.h
-include/CGAL/Regular_triangulation_filtered_traits_3.h
 include/CGAL/Regular_triangulation_vertex_base_2.h
 include/CGAL/Residue.h
 include/CGAL/Ridges.h
@@ -1924,11 +1961,11 @@ include/CGAL/Root_for_circles_2_2.h
 include/CGAL/Root_for_spheres_2_3.h
 include/CGAL/Root_of_traits.h
 include/CGAL/Root_of_traits_specializations.h
+include/CGAL/Rotational_sweep_visibility_2.h
 include/CGAL/Runge_kutta_integrator_2.h
 include/CGAL/Scalar_factor_traits.h
 include/CGAL/Scale_space_reconstruction_3/Scale_space_surface_reconstruction_3_impl.h
 include/CGAL/Scale_space_reconstruction_3/Shape_construction_3.h
-include/CGAL/Scale_space_reconstruction_3/Weighted_PCA_approximation_3.h
 include/CGAL/Scale_space_reconstruction_3/internal/Auto_count.h
 include/CGAL/Scale_space_surface_reconstruction_3.h
 include/CGAL/Search_traits.h
@@ -1983,6 +2020,28 @@ include/CGAL/Segment_Delaunay_graph_2/Voronoi_vertex_sqrt_field_new_C2.h
 include/CGAL/Segment_Delaunay_graph_2/basic.h
 include/CGAL/Segment_Delaunay_graph_2/edge_list.h
 include/CGAL/Segment_Delaunay_graph_2/in_place_edge_list.h
+include/CGAL/Segment_Delaunay_graph_Linf_2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Basic_predicates_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Bisector_Linf.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Constructions_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Filtered_traits_base_2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Finite_edge_interior_conflict_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Infinite_edge_interior_conflict_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Orientation_Linf_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Oriented_side_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Oriented_side_of_bisector_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Predicates_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Segment_Delaunay_graph_Linf_2_impl.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Segment_Delaunay_graph_Linf_hierarchy_2_impl.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Traits_base_2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Vertex_conflict_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Voronoi_vertex_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Voronoi_vertex_ring_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/Voronoi_vertex_sqrt_field_new_C2.h
+include/CGAL/Segment_Delaunay_graph_Linf_2/basic.h
+include/CGAL/Segment_Delaunay_graph_Linf_filtered_traits_2.h
+include/CGAL/Segment_Delaunay_graph_Linf_hierarchy_2.h
+include/CGAL/Segment_Delaunay_graph_Linf_traits_2.h
 include/CGAL/Segment_Delaunay_graph_adaptation_policies_2.h
 include/CGAL/Segment_Delaunay_graph_adaptation_traits_2.h
 include/CGAL/Segment_Delaunay_graph_face_base_2.h
@@ -2000,10 +2059,23 @@ include/CGAL/Segment_Delaunay_graph_traits_2.h
 include/CGAL/Segment_Delaunay_graph_vertex_base_2.h
 include/CGAL/Segment_tree_d.h
 include/CGAL/Segment_tree_k.h
-include/CGAL/Self_intersection_polyhedron_3.h
+include/CGAL/Shape_detection_3.h
+include/CGAL/Shape_detection_3/Cone.h
+include/CGAL/Shape_detection_3/Cylinder.h
+include/CGAL/Shape_detection_3/Efficient_RANSAC.h
+include/CGAL/Shape_detection_3/Efficient_RANSAC_traits.h
+include/CGAL/Shape_detection_3/Octree.h
+include/CGAL/Shape_detection_3/Plane.h
+include/CGAL/Shape_detection_3/Shape_base.h
+include/CGAL/Shape_detection_3/Sphere.h
+include/CGAL/Shape_detection_3/Torus.h
+include/CGAL/Side_of_bounded_square_2.h
+include/CGAL/Side_of_oriented_square_2.h
+include/CGAL/Side_of_triangle_mesh.h
 include/CGAL/Simple_cartesian.h
 include/CGAL/Simple_circular_kernel_2.h
 include/CGAL/Simple_homogeneous.h
+include/CGAL/Simple_polygon_visibility_2.h
 include/CGAL/Simple_spherical_kernel_3.h
 include/CGAL/Sixtuple.h
 include/CGAL/Skin_surface_3.h
@@ -2079,6 +2151,14 @@ include/CGAL/Surface_mesh_default_criteria_3.h
 include/CGAL/Surface_mesh_default_edges_criteria_3.h
 include/CGAL/Surface_mesh_default_triangulation_3.h
 include/CGAL/Surface_mesh_deformation.h
+include/CGAL/Surface_mesh_shortest_path.h
+include/CGAL/Surface_mesh_shortest_path/Surface_mesh_shortest_path.h
+include/CGAL/Surface_mesh_shortest_path/Surface_mesh_shortest_path_traits.h
+include/CGAL/Surface_mesh_shortest_path/barycentric.h
+include/CGAL/Surface_mesh_shortest_path/function_objects.h
+include/CGAL/Surface_mesh_shortest_path/internal/Cone_expansion_event.h
+include/CGAL/Surface_mesh_shortest_path/internal/Cone_tree.h
+include/CGAL/Surface_mesh_shortest_path/internal/misc_functions.h
 include/CGAL/Surface_mesh_simplification/Detail/Common.h
 include/CGAL/Surface_mesh_simplification/Detail/Edge_collapse.h
 include/CGAL/Surface_mesh_simplification/Detail/Edge_collapse_impl.h
@@ -2157,14 +2237,27 @@ include/CGAL/Taucs_matrix.h
 include/CGAL/Taucs_solver_traits.h
 include/CGAL/Taucs_vector.h
 include/CGAL/Tetrahedron_3.h
+include/CGAL/Three/Polyhedron_demo_io_plugin_interface.h
+include/CGAL/Three/Polyhedron_demo_plugin_helper.h
+include/CGAL/Three/Polyhedron_demo_plugin_interface.h
+include/CGAL/Three/Scene_draw_interface.h
+include/CGAL/Three/Scene_group_item.h
+include/CGAL/Three/Scene_interface.h
+include/CGAL/Three/Scene_item.h
+include/CGAL/Three/Scene_item_config.h
+include/CGAL/Three/Viewer_config.h
+include/CGAL/Three/Viewer_interface.h
 include/CGAL/Threetuple.h
 include/CGAL/Time_stamper.h
 include/CGAL/Timer.h
+include/CGAL/Timer_impl.h
 include/CGAL/Tools/Counter.h
 include/CGAL/Tools/Label.h
 include/CGAL/Tools/Log.h
+include/CGAL/Tools/Log_impl.h
 include/CGAL/Tools/chained_map.h
 include/CGAL/Tools/utility_macros.h
+include/CGAL/Traits_with_offsets_adaptor.h
 include/CGAL/Transform_iterator.h
 include/CGAL/Tree_assertions.h
 include/CGAL/Tree_base.h
@@ -2187,6 +2280,7 @@ include/CGAL/Triangle_3_Tetrahedron_3_do_intersect.h
 include/CGAL/Triangle_3_Triangle_3_do_intersect.h
 include/CGAL/Triangle_3_Triangle_3_intersection.h
 include/CGAL/Triangle_accessor_3.h
+include/CGAL/Triangular_expansion_visibility_2.h
 include/CGAL/Triangular_field_2.h
 include/CGAL/Triangulated_mixed_complex_observer_3.h
 include/CGAL/Triangulation.h
@@ -2252,6 +2346,8 @@ include/CGAL/Union_of_balls_3.h
 include/CGAL/Unique_hash_map.h
 include/CGAL/Vector_2.h
 include/CGAL/Vector_3.h
+include/CGAL/Vertex2Data_Property_Map_with_std_map.h
+include/CGAL/Visibility_2/visibility_utils.h
 include/CGAL/Voronoi_diagram_2.h
 include/CGAL/Voronoi_diagram_2/Accessor.h
 include/CGAL/Voronoi_diagram_2/Adaptation_traits_base_2.h
@@ -2299,6 +2395,7 @@ include/CGAL/Width_default_traits_3.h
 include/CGAL/Width_polyhedron_3.h
 include/CGAL/Win32_exception.h
 include/CGAL/aff_transformation_tags.h
+include/CGAL/aff_transformation_tags_impl.h
 include/CGAL/algorithm.h
 include/CGAL/all_furthest_neighbors_2.h
 include/CGAL/apply_to_range.h
@@ -2308,12 +2405,13 @@ include/CGAL/arrange_offset_polygons_2.h
 include/CGAL/array.h
 include/CGAL/assertions.h
 include/CGAL/assertions_behaviour.h
+include/CGAL/assertions_impl.h
+include/CGAL/atomic.h
 include/CGAL/auto_link/CGAL.h
-include/CGAL/auto_link/CGALQt3.h
 include/CGAL/auto_link/CORE.h
 include/CGAL/auto_link/ImageIO.h
 include/CGAL/auto_link/LAPACK.h
-include/CGAL/auto_link/Qt4.h
+include/CGAL/auto_link/Qt.h
 include/CGAL/auto_link/TAUCS.h
 include/CGAL/auto_link/auto_link.h
 include/CGAL/barycenter.h
@@ -2323,9 +2421,11 @@ include/CGAL/basic_constructions_2.h
 include/CGAL/basic_constructions_3.h
 include/CGAL/bbox_intersection_3.h
 include/CGAL/bilateral_smooth_point_set.h
+include/CGAL/boost/graph/Dual.h
 include/CGAL/boost/graph/Euler_operations.h
 include/CGAL/boost/graph/Graph_geometry.h
 include/CGAL/boost/graph/backward_compatibility_functions.h
+include/CGAL/boost/graph/convert_surface_mesh.h
 include/CGAL/boost/graph/dijkstra_shortest_paths.h
 include/CGAL/boost/graph/dijkstra_shortest_paths.hpp
 include/CGAL/boost/graph/graph_concepts.h
@@ -2337,11 +2437,13 @@ include/CGAL/boost/graph/graph_traits_HalfedgeDS.h
 include/CGAL/boost/graph/graph_traits_PolyMesh_ArrayKernelT.h
 include/CGAL/boost/graph/graph_traits_Polyhedron_3.h
 include/CGAL/boost/graph/graph_traits_Surface_mesh.h
+include/CGAL/boost/graph/graph_traits_TriMesh_ArrayKernelT.h
 include/CGAL/boost/graph/graph_traits_Triangulation_2.h
 include/CGAL/boost/graph/halfedge_graph_traits.h
 include/CGAL/boost/graph/halfedge_graph_traits_HalfedgeDS.h
 include/CGAL/boost/graph/halfedge_graph_traits_Polyhedron_3.h
 include/CGAL/boost/graph/helpers.h
+include/CGAL/boost/graph/internal/Has_member_clear.h
 include/CGAL/boost/graph/internal/OM_iterator_from_circulator.h
 include/CGAL/boost/graph/internal/helpers.h
 include/CGAL/boost/graph/iterator.h
@@ -2351,8 +2453,10 @@ include/CGAL/boost/graph/properties_CombinatorialMap.h
 include/CGAL/boost/graph/properties_PolyMesh_ArrayKernelT.h
 include/CGAL/boost/graph/properties_Polyhedron_3.h
 include/CGAL/boost/graph/properties_Surface_mesh.h
+include/CGAL/boost/graph/properties_TriMesh_ArrayKernelT.h
 include/CGAL/boost/graph/selection.h
 include/CGAL/boost/graph/split_graph_into_polylines.h
+include/CGAL/boost/graph/visitor.h
 include/CGAL/boost/iterator/counting_iterator.hpp
 include/CGAL/boost/iterator/transform_iterator.hpp
 include/CGAL/bounding_box.h
@@ -2410,8 +2514,6 @@ include/CGAL/distance_predicates_2.h
 include/CGAL/distance_predicates_3.h
 include/CGAL/double.h
 include/CGAL/edge_aware_upsample_point_set.h
-include/CGAL/eigen.h
-include/CGAL/eigen_2.h
 include/CGAL/enum.h
 include/CGAL/envelope_2.h
 include/CGAL/envelope_3.h
@@ -2419,9 +2521,10 @@ include/CGAL/exceptions.h
 include/CGAL/export/CGAL.h
 include/CGAL/export/CORE.h
 include/CGAL/export/ImageIO.h
-include/CGAL/export/Qt4.h
+include/CGAL/export/Qt.h
 include/CGAL/export/helpers.h
 include/CGAL/extended_euclidean_algorithm.h
+include/CGAL/extract_mean_curvature_flow_skeleton.h
 include/CGAL/extremal_polygon_2.h
 include/CGAL/exude_mesh_3.h
 include/CGAL/float.h
@@ -2446,7 +2549,9 @@ include/CGAL/graph_traits_Dual_Arrangement_2.h
 include/CGAL/grid_simplify_point_set.h
 include/CGAL/halfedgeDS_cut_component.h
 include/CGAL/halfedgeds_connected_components.h
+include/CGAL/hierarchy_simplify_point_set.h
 include/CGAL/hilbert_sort.h
+include/CGAL/hilbert_sort_on_sphere.h
 include/CGAL/in_place_edge_list.h
 include/CGAL/int.h
 include/CGAL/internal/AABB_tree/AABB_drawing_traits.h
@@ -2458,6 +2563,12 @@ include/CGAL/internal/AABB_tree/Has_nested_type_Shared_data.h
 include/CGAL/internal/AABB_tree/Primitive_helper.h
 include/CGAL/internal/AABB_tree/nearest_point_segment_3.h
 include/CGAL/internal/AABB_tree/nearest_point_triangle_3.h
+include/CGAL/internal/AFSR/Surface_face_base_2.h
+include/CGAL/internal/AFSR/Surface_vertex_base_2.h
+include/CGAL/internal/AFSR/construct_polyhedron.h
+include/CGAL/internal/AFSR/construct_surface_2.h
+include/CGAL/internal/AFSR/orient.h
+include/CGAL/internal/AFSR/write_triple_indices.h
 include/CGAL/internal/Classification_type.h
 include/CGAL/internal/Combination_enumerator.h
 include/CGAL/internal/Combinatorial_map_copy_functors.h
@@ -2484,11 +2595,11 @@ include/CGAL/internal/K_neighbor_search.h
 include/CGAL/internal/Lazy_alpha_nt_2.h
 include/CGAL/internal/Lazy_alpha_nt_3.h
 include/CGAL/internal/Mesh_3/Boundary_of_subdomain_of_complex_3_in_triangulation_3_to_off.h
+include/CGAL/internal/Mesh_3/Graph_manipulations.h
+include/CGAL/internal/Mesh_3/check_weights.h
 include/CGAL/internal/Mesh_3/get_index.h
-include/CGAL/internal/Operations_on_polyhedra/AABB_triangle_accessor_3_primitive.h
-include/CGAL/internal/Operations_on_polyhedra/Point_inside_vertical_ray_cast.h
-include/CGAL/internal/Operations_on_polyhedra/Ray_3_Triangle_3_traversal_traits.h
-include/CGAL/internal/Operations_on_polyhedra/compute_normal.h
+include/CGAL/internal/Mesh_3/split_in_polylines.h
+include/CGAL/internal/Polyhedron_plane_clipping_3.h
 include/CGAL/internal/Projection_traits_3.h
 include/CGAL/internal/Regular_triangulation_filtered_traits_3.h
 include/CGAL/internal/Rich_grid.h
@@ -2515,6 +2626,7 @@ include/CGAL/internal/Static_filters/Static_filter_error.h
 include/CGAL/internal/Static_filters/Static_filters.h
 include/CGAL/internal/Static_filters/tools.h
 include/CGAL/internal/Static_or_dynamic_array.h
+include/CGAL/internal/Surface_mesh_deformation/Spokes_and_rims_iterator.h
 include/CGAL/internal/Surface_mesh_segmentation/AABB_traits.h
 include/CGAL/internal/Surface_mesh_segmentation/AABB_traversal_traits.h
 include/CGAL/internal/Surface_mesh_segmentation/Alpha_expansion_graph_cut.h
@@ -2524,13 +2636,18 @@ include/CGAL/internal/Surface_mesh_segmentation/Filters.h
 include/CGAL/internal/Surface_mesh_segmentation/K_means_clustering.h
 include/CGAL/internal/Surface_mesh_segmentation/SDF_calculation.h
 include/CGAL/internal/Surface_mesh_segmentation/Surface_mesh_segmentation.h
-include/CGAL/internal/Surface_modeling/Spokes_and_rims_iterator.h
-include/CGAL/internal/Surface_modeling/Weights.h
+include/CGAL/internal/Surface_mesh_skeletonization/Curve_skeleton.h
+include/CGAL/internal/Surface_mesh_skeletonization/Debug.h
+include/CGAL/internal/Surface_mesh_skeletonization/Detect_degeneracy.h
+include/CGAL/internal/Surface_mesh_skeletonization/get_normal.h
+include/CGAL/internal/Transform_coordinates_traits_3.h
 include/CGAL/internal/Triangulation/Dummy_TDS.h
 include/CGAL/internal/Triangulation/Triangulation_ds_iterators.h
 include/CGAL/internal/Triangulation/utilities.h
 include/CGAL/internal/Triangulation_ds_circulators_3.h
 include/CGAL/internal/Triangulation_ds_iterators_3.h
+include/CGAL/internal/Voronoi_covariance_3/voronoi_covariance_3.h
+include/CGAL/internal/Voronoi_covariance_3/voronoi_covariance_sphere_3.h
 include/CGAL/internal/auxiliary/graph.h
 include/CGAL/internal/boost/array_binary_tree.hpp
 include/CGAL/internal/boost/mutable_heap.hpp
@@ -2540,7 +2657,6 @@ include/CGAL/internal/bounded_priority_queue.h
 include/CGAL/internal/container_fwd_fixed.hpp
 include/CGAL/internal/corefinement/Combinatorial_map_for_corefinement.h
 include/CGAL/internal/corefinement/Polyhedron_constness_types.h
-include/CGAL/internal/corefinement/Polyhedron_subset_extraction.h
 include/CGAL/internal/corefinement/intersection_coplanar_triangles_3.h
 include/CGAL/internal/corefinement/intersection_triangle_segment_3.h
 include/CGAL/internal/corefinement/intersection_triangle_segment_3_coplanar.h
@@ -2590,6 +2706,7 @@ include/CGAL/linear_least_squares_fitting_spheres_3.h
 include/CGAL/linear_least_squares_fitting_tetrahedra_3.h
 include/CGAL/linear_least_squares_fitting_triangles_2.h
 include/CGAL/linear_least_squares_fitting_triangles_3.h
+include/CGAL/lloyd_optimize_mesh_2.h
 include/CGAL/lloyd_optimize_mesh_3.h
 include/CGAL/long_double.h
 include/CGAL/long_long.h
@@ -2616,6 +2733,7 @@ include/CGAL/mpq_class.h
 include/CGAL/mpz_class.h
 include/CGAL/mst_orient_normals.h
 include/CGAL/multiset_assertions.h
+include/CGAL/mutex.h
 include/CGAL/natural_neighbor_coordinates_2.h
 include/CGAL/natural_neighbor_coordinates_3.h
 include/CGAL/nearest_neighbor_delaunay_2.h
@@ -2627,8 +2745,6 @@ include/CGAL/number_utils_classes.h
 include/CGAL/odt_optimize_mesh_3.h
 include/CGAL/offset_polygon_2.h
 include/CGAL/optimize_mesh_3.h
-include/CGAL/orient_polygon_soup.h
-include/CGAL/orient_polyhedron_3.h
 include/CGAL/parameterize.h
 include/CGAL/partition_2.h
 include/CGAL/partition_is_valid_2.h
@@ -2642,7 +2758,7 @@ include/CGAL/point_generators_d.h
 include/CGAL/point_set_processing_assertions.h
 include/CGAL/poisson_refine_triangulation.h
 include/CGAL/polygon_function_objects.h
-include/CGAL/polygon_soup_to_polyhedron_3.h
+include/CGAL/polygon_mesh_processing.h
 include/CGAL/polyhedron_cut_plane_3.h
 include/CGAL/polynomial_utils.h
 include/CGAL/predicates/Polygon_offset_pred_ftC2.h
@@ -2663,6 +2779,7 @@ include/CGAL/predicates_on_lines_2.h
 include/CGAL/predicates_on_points_2.h
 include/CGAL/predicates_on_points_3.h
 include/CGAL/primes.h
+include/CGAL/primes_impl.h
 include/CGAL/property_map.h
 include/CGAL/radial_orient_normals.h
 include/CGAL/random_convex_hull_in_disc_2.h
@@ -2672,6 +2789,7 @@ include/CGAL/random_selection.h
 include/CGAL/random_simplify_point_set.h
 include/CGAL/range_search_delaunay_2.h
 include/CGAL/rational_rotation.h
+include/CGAL/read_vtk_image_data.h
 include/CGAL/rectangular_3_center_2.h
 include/CGAL/rectangular_p_center_2.h
 include/CGAL/refine_mesh_3.h
@@ -2686,6 +2804,7 @@ include/CGAL/simple_transformations_d.h
 include/CGAL/simplest_rational_in_interval.h
 include/CGAL/sorted_matrix_search.h
 include/CGAL/spatial_sort.h
+include/CGAL/spatial_sort_on_sphere.h
 include/CGAL/squared_distance_2.h
 include/CGAL/squared_distance_2_1.h
 include/CGAL/squared_distance_2_2.h
@@ -2704,14 +2823,15 @@ include/CGAL/surface_neighbors_3.h
 include/CGAL/surface_reconstruction_points_assertions.h
 include/CGAL/sweep_observer.h
 include/CGAL/tags.h
+include/CGAL/test_FPU_rounding_mode_impl.h
 include/CGAL/to_rational.h
 include/CGAL/trace.h
 include/CGAL/transforming_iterator.h
 include/CGAL/transforming_pair_iterator.h
 include/CGAL/triangulate_mixed_complex_3.h
-include/CGAL/triangulate_polyhedron.h
 include/CGAL/triangulate_power_diagram_3.h
 include/CGAL/triangulation_assertions.h
+include/CGAL/tss.h
 include/CGAL/tuple.h
 include/CGAL/type_traits.h
 include/CGAL/typeset.h
@@ -2721,6 +2841,8 @@ include/CGAL/utility.h
 include/CGAL/utils.h
 include/CGAL/utils_classes.h
 include/CGAL/value_type_traits.h
+include/CGAL/vcm_estimate_edges.h
+include/CGAL/vcm_estimate_normals.h
 include/CGAL/vector.h
 include/CGAL/version.h
 include/CGAL/version_macros.h
@@ -2728,24 +2850,30 @@ include/CGAL/vtkSurfaceMesherContourFilter.h
 include/CGAL/width_assertions.h
 include/CGAL/wlop_simplify_and_regularize_point_set.h
 include/CGAL/wmult.h
-lib/CGAL/2.6.2-to-2.8.1/FindQt4-Copyright.txt
-lib/CGAL/2.6.2-to-2.8.1/FindQt4.cmake
-lib/CGAL/2.6.2-to-2.8.1/Qt4ConfigDependentSettings.cmake
-lib/CGAL/2.6.2-to-2.8.1/Qt4Macros.cmake
-lib/CGAL/2.6.2-to-2.8.1/UseQt4.cmake
 lib/CGAL/CGALConfig.cmake
 lib/CGAL/CGALConfig_binary.cmake.in
 lib/CGAL/CGALConfig_install.cmake.in
+lib/CGAL/CGALExports-%%CMAKE_BUILD_TYPE%%.cmake
+lib/CGAL/CGALExports.cmake
+lib/CGAL/CGALLibConfig.cmake
+lib/CGAL/CGALLibConfig.cmake.in
 lib/CGAL/CGAL_CheckCXXFileRuns.cmake
 lib/CGAL/CGAL_Common.cmake
+lib/CGAL/CGAL_CoreExports-%%CMAKE_BUILD_TYPE%%.cmake
+lib/CGAL/CGAL_CoreExports.cmake
+lib/CGAL/CGAL_CoreLibConfig.cmake
 lib/CGAL/CGAL_CreateSingleSourceCGALProgram.cmake
 lib/CGAL/CGAL_GeneratorSpecificSettings.cmake
+lib/CGAL/CGAL_ImageIOExports-%%CMAKE_BUILD_TYPE%%.cmake
+lib/CGAL/CGAL_ImageIOExports.cmake
+lib/CGAL/CGAL_ImageIOLibConfig.cmake
 lib/CGAL/CGAL_Locate_CGAL_TAUCS.cmake
 lib/CGAL/CGAL_Macros.cmake
 lib/CGAL/CGAL_SCM.cmake
 lib/CGAL/CGAL_SetupBoost.cmake
 lib/CGAL/CGAL_SetupDependencies.cmake
 lib/CGAL/CGAL_SetupFlags.cmake
+lib/CGAL/CGAL_SetupVLD.cmake
 lib/CGAL/CGAL_TweakFindBoost.cmake
 lib/CGAL/CGAL_UseBLAS.cmake
 lib/CGAL/CGAL_UseLAPACK.cmake
@@ -2763,6 +2891,7 @@ lib/CGAL/FindCORE.cmake
 lib/CGAL/FindESBTL.cmake
 lib/CGAL/FindEigen3.cmake
 lib/CGAL/FindF2C.cmake
+lib/CGAL/FindGLEW.cmake
 lib/CGAL/FindGMP.cmake
 lib/CGAL/FindGMPXX.cmake
 lib/CGAL/FindIPE.cmake
@@ -2775,12 +2904,10 @@ lib/CGAL/FindNTL.cmake
 lib/CGAL/FindOpenGL.cmake
 lib/CGAL/FindOpenMesh.cmake
 lib/CGAL/FindQGLViewer.cmake
-lib/CGAL/FindQt3-patched.cmake
 lib/CGAL/FindRS.cmake
 lib/CGAL/FindRS3.cmake
 lib/CGAL/FindTAUCS.cmake
 lib/CGAL/FindTBB.cmake
-lib/CGAL/Qt3Macros-patched.cmake
 lib/CGAL/UseCGAL.cmake
 lib/CGAL/UseESBTL.cmake
 lib/CGAL/UseEigen3.cmake
@@ -2789,14 +2916,11 @@ lib/CGAL/UseTBB.cmake
 lib/CGAL/test_MPFI.cpp
 lib/libCGAL.so
 lib/libCGAL.so.11
-lib/libCGAL.so.11.0.0
+lib/libCGAL.so.11.0.2
 lib/libCGAL_Core.so
 lib/libCGAL_Core.so.11
-lib/libCGAL_Core.so.11.0.0
-%%GUI%%lib/libCGAL_ImageIO.so
-%%GUI%%lib/libCGAL_ImageIO.so.11
-%%GUI%%lib/libCGAL_ImageIO.so.11.0.0
-%%GUI%%lib/libCGAL_Qt4.so
-%%GUI%%lib/libCGAL_Qt4.so.11
-%%GUI%%lib/libCGAL_Qt4.so.11.0.0
+lib/libCGAL_Core.so.11.0.2
+lib/libCGAL_ImageIO.so
+lib/libCGAL_ImageIO.so.11
+lib/libCGAL_ImageIO.so.11.0.2
 man/man1/cgal_create_cmake_script.1.gz