- Update to 4.1.1

PR:		ports/145923
Submitted by:	Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer)

4 files changed, 51 insertions, 33 deletions

diff --git a/science/netcdf4/Makefile b/science/netcdf4/Makefile
index 2edc6326dc0f..964a801fb938 100644
--- a/science/netcdf4/Makefile
+++ b/science/netcdf4/Makefile
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	netcdf
-PORTVERSION=	4.0.1
-PORTREVISION=	1
+PORTVERSION=	4.1.1
 CATEGORIES=	science
 MASTER_SITES=	http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
 		ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
@@ -20,8 +19,8 @@ CONFLICTS=	hdf-4.* netcdf-3.*
 LATEST_LINK=	netcdf4
 
 CONFIGURE_ARGS=	--disable-f77 --disable-f90 \
-		--enable-cxx --enable-cxx-4 --enable-ncgen4 --enable-netcdf-4 \
-		--enable-shared --with-hdf5=${LOCALBASE} --with-zlib=/usr
+		--enable-cxx --enable-cxx-4 --enable-netcdf-4 --enable-shared \
+		--with-hdf5=${LOCALBASE} --with-zlib=/usr
 CONFIGURE_ENV+=	CPPFLAGS="${CPPFLAGS} -I${LOCALBASE}/include -fPIC -DPIC -Df2cFortran"
 MAKE_ENV+=	MAKEINFOFLAGS="--no-split" INFODIR="${PREFIX}/${INFO_PATH}"
 
@@ -30,13 +29,13 @@ USE_LDCONFIG=	yes
 
 LIB_DEPENDS+=	hdf5.6:${PORTSDIR}/science/hdf5-18
 
-INFO=		netcdf netcdf-c netcdf-cxx netcdf-cxx4 netcdf-f77 \
+INFO=		netcdf netcdf-c netcdf-cxx netcdf-f77 \
 		netcdf-f90 netcdf-install netcdf-tutorial
 
-MAN1=		ncdump.1 ncgen.1 ncgen4.1
+MAN1=		ncdump.1 ncgen.1 ncgen3.1 nccopy.1
 MAN3=		netcdf.3
 
-OPTIONS=	HDF5_CONVERT	"Do data conversion through HDF5"	off
+OPTIONS=	SZIP    "SZIP support (required if HDF5 was built with SZIP)" off
 
 .if !defined(NOPORTDOCS)
 CONFIGURE_ARGS+=--enable-docs-install
@@ -44,18 +43,19 @@ CONFIGURE_ARGS+=--enable-docs-install
 CONFIGURE_ARGS+=--disable-docs-install
 .endif
 
-.if defined(WITH_HDF5_CONVERT)
-CONFIGURE_ARGS+=--enable-hdf5-convert
+.if defined(WITH_SZIP)
+CONFIGURE_ARGS+=	--with-szlib=${LOCALBASE}
+LIB_DEPEND+=		sz.2:${PORTSDIR}/science/szip
 .endif
 
 post-patch:
 	@${REINPLACE_CMD} -e \
 		's|$$(libdir)/pkgconfig|$$(prefix)/libdata/pkgconfig|' \
 		${WRKSRC}/Makefile.in
-	@${REINPLACE_CMD} -e '288 s/\(info_docs\).*/html_docs\)/' \
+	@${REINPLACE_CMD} -e '297 s/\(info_docs\).*/html_docs\)/' \
 		${WRKSRC}/man4/Makefile.in
 .if defined(NOPORTDOCS)
-	@${REINPLACE_CMD} -e '829 s/install-docDATA //' \
+	@${REINPLACE_CMD} -e '839 s/install-docDATA //' \
 		${WRKSRC}/man4/Makefile.in
 
 .endif
diff --git a/science/netcdf4/distinfo b/science/netcdf4/distinfo
index 77b19bff2660..5e4e824c4f98 100644
--- a/science/netcdf4/distinfo
+++ b/science/netcdf4/distinfo
@@ -1,3 +1,3 @@
-MD5 (netcdf-4.0.1.tar.gz) = a251453c5477599f050fa4e593295186
-SHA256 (netcdf-4.0.1.tar.gz) = 290e377aa2e9419bb50a2fa1038d6e77d36f239a8a9c3be9e3a9319f1e484d19
-SIZE (netcdf-4.0.1.tar.gz) = 8018998
+MD5 (netcdf-4.1.1.tar.gz) = 79c5ff14c80d5e18dd8f1fceeae1c8e1
+SHA256 (netcdf-4.1.1.tar.gz) = 7933d69d378c57f038375bae4dd78c52442a06e2647fce4b75c13a225e342fb0
+SIZE (netcdf-4.1.1.tar.gz) = 11201096
diff --git a/science/netcdf4/files/patch-libsrc4-nc4hdf.c b/science/netcdf4/files/patch-libsrc4-nc4hdf.c
deleted file mode 100644
index 7134e3b031b3..000000000000
--- a/science/netcdf4/files/patch-libsrc4-nc4hdf.c
+++ /dev/null
@@ -1,12 +0,0 @@
---- libsrc4/nc4hdf.c.orig	2008-06-10 23:38:34.000000000 +0800
-+++ libsrc4/nc4hdf.c	2008-12-04 00:10:23.755371693 +0800
-@@ -465,6 +465,9 @@
-    int need_to_extend = 0, fill_value_recs = 0;
-    int scalar = 0, retval = NC_NOERR, range_error = 0, i, d2;
-    void *bufr = NULL;
-+#ifdef HDF5_CONVERT
-+   H5T_conv_except_func_t except_func;
-+#endif
- #ifndef HDF5_CONVERT   
-    int need_to_convert = 0;
-    size_t len = 1;
diff --git a/science/netcdf4/pkg-plist b/science/netcdf4/pkg-plist
index a60295c8a806..43fed73d45ed 100644
--- a/science/netcdf4/pkg-plist
+++ b/science/netcdf4/pkg-plist
@@ -1,12 +1,39 @@
 bin/nc-config
+bin/nccopy
 bin/ncdump
 bin/ncgen
-bin/ncgen4
+bin/ncgen3
+include/ncAtt.h
+include/ncByte.h
+include/ncChar.h
+include/ncCheck.h
+include/ncCompoundType.h
+include/ncDim.h
+include/ncDouble.h
+include/ncEnumType.h
+include/ncException.h
+include/ncFile.h
+include/ncFloat.h
+include/ncGroup.h
+include/ncGroupAtt.h
+include/ncInt.h
+include/ncInt64.h
+include/ncOpaqueType.h
+include/ncShort.h
+include/ncString.h
+include/ncType.h
+include/ncUbyte.h
+include/ncUint.h
+include/ncUint64.h
+include/ncUshort.h
+include/ncVar.h
+include/ncVarAtt.h
+include/ncVlenType.h
+include/netcdf
 include/ncvalues.h
 include/netcdf.h
 include/netcdf.hh
 include/netcdfcpp.h
-include/netcdfcpp4.h
 lib/libnetcdf.a
 lib/libnetcdf.la
 lib/libnetcdf.so
@@ -22,37 +49,40 @@ lib/libnetcdf_c++4.so.1
 libdata/pkgconfig/netcdf.pc
 %%PORTDOCS%%%%DOCSDIR%%/ncdump-man-1.html
 %%PORTDOCS%%%%DOCSDIR%%/ncgen-man-1.html
-%%PORTDOCS%%%%DOCSDIR%%/ncgen4-man-1.html
+%%PORTDOCS%%%%DOCSDIR%%/ncgen3-man-1.html
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-c.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-c.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-c.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-c.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.txt
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx4.html
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx4.pdf
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx4.ps
-%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx4.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-install.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-install.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-install.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-install.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-man-3.html
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.txt
 %%PORTDOCS%%%%DOCSDIR%%/netcdf.html
+%%PORTDOCS%%%%DOCSDIR%%/netcdf.info
 %%PORTDOCS%%%%DOCSDIR%%/netcdf.pdf
 %%PORTDOCS%%%%DOCSDIR%%/netcdf.ps
 %%PORTDOCS%%%%DOCSDIR%%/netcdf.txt