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authorrene <rene@FreeBSD.org>2011-04-19 06:25:41 +0800
committerrene <rene@FreeBSD.org>2011-04-19 06:25:41 +0800
commit490b206354af8f9c667e2ec65ca95e9cb4743f34 (patch)
treeb5de2ac4b657e2171e14b45725d3b63f7284fb7c /science
parente12d1d1e49c238730d927d0871067913564a6a83 (diff)
downloadfreebsd-ports-gnome-490b206354af8f9c667e2ec65ca95e9cb4743f34.tar.gz
freebsd-ports-gnome-490b206354af8f9c667e2ec65ca95e9cb4743f34.tar.zst
freebsd-ports-gnome-490b206354af8f9c667e2ec65ca95e9cb4743f34.zip
Remove most expired ports:
2011-04-17 cad/tclspice: has been broken for more than a year 2011-04-17 comms/hcfmdm: does not compile on 7.X or higher 2011-04-17 databases/mysqlcc: has been broken for almost a year 2011-04-17 devel/ruby-rjudy: does not compile on FreeBSD 7.x or newer 2011-04-17 devel/xfc: does not compile on FreeBSD 7.x or newer 2011-04-17 devel/lamson: has been broken for a half year 2011-04-17 devel/cocktail: does not build on FreeBSD 7.x or newer 2011-04-17 devel/djgpp-gcc: has been broken for half a year 2011-04-17 devel/gauche-sdl: has been broken for a year 2011-04-17 devel/gdb53-act: does not compile on FreeBSD 7.x and up 2011-04-17 editors/zed: does not compile on FreeBSD 7.x or newer 2011-04-17 games/aqbubble: does not compile on FreeBSD 7.x or newer 2011-04-17 graphics/libvisual-plugins: has been broken for 3 years 2011-04-17 japanese/roundcube: has been broken for almost a year 2011-04-17 japanese/tkstep80: does not compile on FreeBSD 7.x or newer 2011-04-17 lang/u++: has been broken for over a half year 2011-04-17 lang/pugs: has been broken for over a year 2011-04-17 lang/mozart: does not compile on FreeBSD 7.x or newer 2011-04-17 math/linalg: does not build on FreeBSD 7.x or newer 2011-04-17 math/R-cran-igraph: has been broken for over a half year 2011-04-17 misc/ftree: has been broken for over a half year 2011-04-17 multimedia/katchtv: has been broken for a half year 2011-04-17 multimedia/libomxil-bellagio: has been broken for almost a year 2011-04-17 multimedia/banshee-mirage: has been broken for over a half year 2011-04-17 net-p2p/trackerbt: has been broken for a half year 2011-04-17 net/cap: does not compile on FreeBSD 7.x or newer 2011-04-17 net/ggsd: does not compile on FreeBSD 7.x or newer 2011-04-17 net/b2bua: does not compile on FreeBSD 7.x or newer 2011-04-17 net/penguintv: has been broken for a half year 2011-04-17 news/openftd: has been broken for almost a year 2011-04-17 palm/romeo: does not compile on FreeBSD 7.x or newer 2011-04-17 science/pcp: does not compile on FreeBSD 7.x or newer 2011-04-17 science/elmer-fem: has been broken for over a year 2011-04-17 security/newpki-lib: does not compile on FreeBSD 7.x or newer 2011-04-17 security/newpki-server: does not compile on FreeBSD 7.x or newer 2011-04-17 security/xmlsec: does not compile on FreeBSD 7.x or newer 2011-04-17 security/f-protd: has been broken for over a year 2011-04-17 sysutils/xwlans: does not compile on FreeBSD 7.x or newer 2011-04-17 www/bk_edit: does not compile on FreeBSD 7.x and newer 2011-04-17 www/bricolage: has been broken for a half year 2011-04-17 x11-toolkits/gauche-gtk: has been broken for a year 2011-04-17 x11-toolkits/gambas2-gb-qt: has been broken for over a year 2011-04-17 x11-toolkits/php-gtk2: has been broken for over a half year 2011-04-17 x11-toolkits/p5-Tcl-Tk: has been broken for 2 year 2011-04-17 x11/metisse: has been broken for over a half year
Diffstat (limited to 'science')
-rw-r--r--science/Makefile2
-rw-r--r--science/elmer-fem/Makefile84
-rw-r--r--science/elmer-fem/distinfo3
-rw-r--r--science/elmer-fem/files/patch-acx_elmer.m420
-rw-r--r--science/elmer-fem/files/patch-configure.in11
-rw-r--r--science/elmer-fem/files/patch-src+f_stubs.c12
-rw-r--r--science/elmer-fem/pkg-descr9
-rw-r--r--science/elmer-fem/pkg-plist118
-rw-r--r--science/pcp/Makefile22
-rw-r--r--science/pcp/distinfo3
-rw-r--r--science/pcp/pkg-descr21
-rw-r--r--science/pcp/pkg-plist2
12 files changed, 0 insertions, 307 deletions
diff --git a/science/Makefile b/science/Makefile
index 8566fffd7c7d..65779182b15e 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -34,7 +34,6 @@
SUBDIR += dtiquery
SUBDIR += ecs
SUBDIR += elmer-eio
- SUBDIR += elmer-fem
SUBDIR += elmer-hutiter
SUBDIR += elmer-matc
SUBDIR += elmer-meshgen2d
@@ -141,7 +140,6 @@
SUBDIR += p5-Physics-Unit
SUBDIR += paje
SUBDIR += paraview
- SUBDIR += pcp
SUBDIR += peekabot
SUBDIR += pnetcdf
SUBDIR += psi3
diff --git a/science/elmer-fem/Makefile b/science/elmer-fem/Makefile
deleted file mode 100644
index d9fa2f43b599..000000000000
--- a/science/elmer-fem/Makefile
+++ /dev/null
@@ -1,84 +0,0 @@
-# New ports collection makefile for: elmer-fem
-# Date created: 5 Jan 2006
-# Whom: Pedro Giffuni <giffunip@asme.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME= fem
-PORTVERSION= 5.4.0
-PORTREVISION= 7
-CATEGORIES= science tk
-MASTER_SITES= http://garr.dl.sourceforge.net/sourceforge/elmerfem/
-PKGNAMEPREFIX= elmer-
-
-MAINTAINER= sylvio@FreeBSD.org
-COMMENT= FEM solver for use in the ELMER FEM package
-
-BUILD_DEPENDS= ${LOCALBASE}/lib/libmatc.a:${PORTSDIR}/science/elmer-matc \
- ${LOCALBASE}/lib/libeiof.a:${PORTSDIR}/science/elmer-eio \
- ${LOCALBASE}/lib/libhuti.a:${PORTSDIR}/science/elmer-hutiter \
- ${LOCALBASE}/lib/libumfpack_elmer.a:${PORTSDIR}/math/elmer-umfpack
-RUN_DEPENDS= ElmerGrid:${PORTSDIR}/science/elmergrid \
- Mesh2D:${PORTSDIR}/science/elmer-meshgen2d
-
-BROKEN= fails to compile with gcc4.4
-DEPRECATED= has been broken for over a year
-EXPIRATION_DATE=2011-04-17
-
-USE_FORTRAN= yes
-
-.ifdef WITH_OPTIMIZED_FLAGS
-FCFLAGS+= -O3 -ffast-math
-.endif
-
-USE_AUTOTOOLS= autoconf
-GNU_CONFIGURE= yes
-USE_GMAKE= yes
-ALL_TARGET=
-USE_LDCONFIG= yes
-TEST_ENV= ELMER_HOME=${PREFIX}
-
-DATADIR= ${PREFIX}/share/elmersolver
-PLIST_SUB= ARCH=${MACHINE_ARCH}
-
-.include <bsd.port.pre.mk>
-
-.if exists(${LOCALBASE}/lib/libatlas_r.so) && !defined(WITH_BLAS)
-WITH_ATLAS= yes
-.endif
-.if defined(WITH_ATLAS)
-LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
-BLAS= -lf77blas -latlas
-LAPACK= -lalapack -lcblas
-.else
-LIB_DEPENDS+= lapack.4:${PORTSDIR}/math/lapack
-LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
-BLAS= -lblas
-LAPACK= -llapack
-.endif
-
-.if ${ARCH} == "amd64" || ${ARCH} == "ia64"
-CFLAGS+= -fPIC
-FCFLAGS+= -fPIC
-FFLAGS+= -fPIC ${FCFLAGS}
-.endif
-LDFLAGS+= -L${LOCALBASE}/lib
-CPPFLAGS+= -I${LOCALBASE}/include
-CFLAGS+= -I${LOCALBASE}/include
-CXXFLAGS+= -I${LOCALBASE}/include
-CONFIGURE_ENV+= FCFLAGS="${FCFLAGS}"
-CONFIGURE_ARGS+= --with-umfpack="-lumfpack_elmer" \
- --with-blas="${BLAS}" \
- --with-lapack="${LAPACK}" \
- --with-eiof="-leiof" \
- --with-matc="-lmatc -lm"
-pre-configure:
- ${REINPLACE_CMD} -e 's|make|${GMAKE}|g' ${WRKSRC}/tests/runtests.in
-
-.if defined(MAINTAINER_MODE)
-regression-test: install
- @(cd ${BUILD_WRKSRC}; ${SETENV} ${TEST_ENV} ${GMAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} check)
-.endif
-
-.include <bsd.port.post.mk>
diff --git a/science/elmer-fem/distinfo b/science/elmer-fem/distinfo
deleted file mode 100644
index 2f7ceef1336a..000000000000
--- a/science/elmer-fem/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 (fem-5.4.0.tar.gz) = fa08816b971d207440686130cda8fc29
-SHA256 (fem-5.4.0.tar.gz) = 3460db3a9860dcdbde004ae29c6d2b8d7d6e45b81297acb39526c999354b8047
-SIZE (fem-5.4.0.tar.gz) = 4236876
diff --git a/science/elmer-fem/files/patch-acx_elmer.m4 b/science/elmer-fem/files/patch-acx_elmer.m4
deleted file mode 100644
index 7115b9a58d25..000000000000
--- a/science/elmer-fem/files/patch-acx_elmer.m4
+++ /dev/null
@@ -1,20 +0,0 @@
---- acx_elmer.m4.orig Thu Mar 30 17:27:42 2006
-+++ acx_elmer.m4 Tue Jan 16 11:00:48 2007
-@@ -597,7 +597,7 @@
-
- # Generic UMFPACK library?
- if test $acx_umfpack_ok = no; then
-- AC_CHECK_LIB(umfpack, $umf4def, [acx_umfpack_ok=yes; UMFPACK_LIBS="-lumfpack -lamd"],,[-lamd])
-+ AC_CHECK_LIB(umfpack_elmer, $umf4def, [acx_umfpack_ok=yes; UMFPACK_LIBS="-lumfpack_elmer -lamd_elmer"],,[-lamd_elmer])
- fi
-
- AC_SUBST(UMFPACK_LIBS)
-@@ -1384,7 +1384,7 @@
- ;;
- *-*-freebsd*)
- SH_LD="$CC"
-- SH_LDFLAGS="-shared"
-+ SH_LDFLAGS="-shared -fPIC"
- ;;
- alpha*-dec-osf*)
- SH_LDFLAGS="-shared"
diff --git a/science/elmer-fem/files/patch-configure.in b/science/elmer-fem/files/patch-configure.in
deleted file mode 100644
index 6fd49a53af6b..000000000000
--- a/science/elmer-fem/files/patch-configure.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- configure.in.orig Wed Feb 15 18:56:07 2006
-+++ configure.in Wed Feb 15 18:56:45 2006
-@@ -69,7 +69,7 @@
- FCFLAGS="$FCFLAGS -I. ${INCLUDE_MODULE_FLAG}binio"
- FFLAGS="$FFLAGS -I."
- ELMER_HOME="$prefix"
--FCPPFLAGS="-P $TRADITIONAL_CPP_FLAGS -I. -I$prefix/include -DFULL_INDUCTION -DUSE_ARPACK"
-+FCPPFLAGS="-P -traditional -I. $CPPFLAGS -I$prefix/include -DFULL_INDUCTION -DUSE_ARPACK"
- TESTS_FCFLAGS=""
-
- ELMER_LIBERRORMSG="wasn't found, make sure it is in the prefix, or CFLAGS and LIBS are correct if they are somewhere else."
diff --git a/science/elmer-fem/files/patch-src+f_stubs.c b/science/elmer-fem/files/patch-src+f_stubs.c
deleted file mode 100644
index 310c7e2162cf..000000000000
--- a/science/elmer-fem/files/patch-src+f_stubs.c
+++ /dev/null
@@ -1,12 +0,0 @@
---- src/f_stubs.c.orig Mon Aug 29 05:07:45 2005
-+++ src/f_stubs.c Thu May 4 22:56:30 2006
-@@ -13,8 +13,8 @@
-
- #else
-
--#include <sys/resource.h>
- #include <sys/time.h>
-+#include <sys/resource.h>
- #include <sys/times.h>
- #include <sys/param.h>
-
diff --git a/science/elmer-fem/pkg-descr b/science/elmer-fem/pkg-descr
deleted file mode 100644
index e213b4caed4e..000000000000
--- a/science/elmer-fem/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-ElmerSolver - the Solution of Partial Differential Equations.
-
-ElmerSolver is thus an independent module that processes the computational
-mesh and the model input file containing references to the selected
-equations and model parameters. ElmerSolver makes the equations into a
-discrete form, handles coupled systems, non-linearities and
-time-dependences, and provides output data for visualization.
-
-WWW: http://www.csc.fi/elmer/elmersolve/
diff --git a/science/elmer-fem/pkg-plist b/science/elmer-fem/pkg-plist
deleted file mode 100644
index 3c01fdbdb545..000000000000
--- a/science/elmer-fem/pkg-plist
+++ /dev/null
@@ -1,118 +0,0 @@
-bin/SC2Elmer
-bin/ElmerSolver
-bin/GebhardtFactors
-bin/ViewFactors
-bin/elmerld
-bin/elmerf90
-bin/elmerf90-nosh
-lib/libelmersolver.so
-%%DATADIR%%/include/adaptive.mod
-%%DATADIR%%/include/bandmatrix.mod
-%%DATADIR%%/include/bandwidthoptimize.mod
-%%DATADIR%%/include/binio.mod
-%%DATADIR%%/include/coordinatesystems.mod
-%%DATADIR%%/include/crsmatrix.mod
-%%DATADIR%%/include/defutils.mod
-%%DATADIR%%/include/differentials.mod
-%%DATADIR%%/include/diffuseconvective.mod
-%%DATADIR%%/include/diffuseconvectivegeneral.mod
-%%DATADIR%%/include/directsolve.mod
-%%DATADIR%%/include/eigensolve.mod
-%%DATADIR%%/include/elementdescription.mod
-%%DATADIR%%/include/elementutils.mod
-%%DATADIR%%/include/freesurface.mod
-%%DATADIR%%/include/gebhardtfactorglobals.mod
-%%DATADIR%%/include/generalutils.mod
-%%DATADIR%%/include/globmat.mod
-%%DATADIR%%/include/hashtable.mod
-%%DATADIR%%/include/integration.mod
-%%DATADIR%%/include/interpolation.mod
-%%DATADIR%%/include/iterativemethods.mod
-%%DATADIR%%/include/itersolve.mod
-%%DATADIR%%/include/linearalgebra.mod
-%%DATADIR%%/include/lists.mod
-%%DATADIR%%/include/ludecomposition.mod
-%%DATADIR%%/include/mainutils.mod
-%%DATADIR%%/include/materialmodels.mod
-%%DATADIR%%/include/maxwell.mod
-%%DATADIR%%/include/maxwellaxis.mod
-%%DATADIR%%/include/maxwellgeneral.mod
-%%DATADIR%%/include/meshutils.mod
-%%DATADIR%%/include/messages.mod
-%%DATADIR%%/include/modeldescription.mod
-%%DATADIR%%/include/multigrid.mod
-%%DATADIR%%/include/navierstokes.mod
-%%DATADIR%%/include/navierstokescylindrical.mod
-%%DATADIR%%/include/navierstokesgeneral.mod
-%%DATADIR%%/include/paralleleigensolve.mod
-%%DATADIR%%/include/parallelutils.mod
-%%DATADIR%%/include/pelementbase.mod
-%%DATADIR%%/include/pelementmaps.mod
-%%DATADIR%%/include/radiation.mod
-%%DATADIR%%/include/radiationfactorglobals.mod
-%%DATADIR%%/include/solverutils.mod
-%%DATADIR%%/include/sparitercomm.mod
-%%DATADIR%%/include/spariterglobals.mod
-%%DATADIR%%/include/spariterprecond.mod
-%%DATADIR%%/include/sparitersolve.mod
-%%DATADIR%%/include/stressgeneral.mod
-%%DATADIR%%/include/stresslocal.mod
-%%DATADIR%%/include/timeintegrate.mod
-%%DATADIR%%/include/types.mod
-%%DATADIR%%/include/viewfactorglobals.mod
-%%DATADIR%%/include/dxfile.mod
-%%DATADIR%%/include/exchangecorrelations.mod
-%%DATADIR%%/include/harmonicsolve.mod
-%%DATADIR%%/include/vtklegacyfile.mod
-%%DATADIR%%/include/kinds.mod
-%%DATADIR%%/lib/AdvectionDiffusion.so
-%%DATADIR%%/lib/ArteryOutlet.so
-%%DATADIR%%/lib/ArtificialCompressibility.so
-%%DATADIR%%/lib/DCRComplexSolve.so
-%%DATADIR%%/lib/ElasticSolve.so
-%%DATADIR%%/lib/ElectricForce.so
-%%DATADIR%%/lib/Electrokinetics.so
-%%DATADIR%%/lib/EliminateDirichlet.so
-%%DATADIR%%/lib/EliminatePeriodic.so
-%%DATADIR%%/lib/EnergyRelease.so
-%%DATADIR%%/lib/FDiffusion.so
-%%DATADIR%%/lib/FDiffusion3D.so
-%%DATADIR%%/lib/FluidicForce.so
-%%DATADIR%%/lib/FluxSolver.so
-%%DATADIR%%/lib/FreeSurfaceReduced.so
-%%DATADIR%%/lib/FreeSurfaceSolver.so
-%%DATADIR%%/lib/HelmholtzBEM.so
-%%DATADIR%%/lib/HelmholtzSolve.so
-%%DATADIR%%/lib/KESolver.so
-%%DATADIR%%/lib/LevelSet.so
-%%DATADIR%%/lib/MagneticSolve.so
-%%DATADIR%%/lib/MovingElstatSolver.so
-%%DATADIR%%/lib/NormalSolver.so
-%%DATADIR%%/lib/PhaseChangeSolve.so
-%%DATADIR%%/lib/PoissonBEM.so
-%%DATADIR%%/lib/PoissonBoltzmannSolve.so
-%%DATADIR%%/lib/RateOfChange.so
-%%DATADIR%%/lib/ReloadData.so
-%%DATADIR%%/lib/ReloadInput.so
-%%DATADIR%%/lib/ResultOutputSolve.so
-%%DATADIR%%/lib/RigidBodyReduction.so
-%%DATADIR%%/lib/SOLVER.KEYWORDS
-%%DATADIR%%/lib/SaveData.so
-%%DATADIR%%/lib/Smitc.so
-%%DATADIR%%/lib/StatCurrentSolve.so
-%%DATADIR%%/lib/StatElecSolve.so
-%%DATADIR%%/lib/StatMagSolve.so
-%%DATADIR%%/lib/Stokes.so
-%%DATADIR%%/lib/StreamSolver.so
-%%DATADIR%%/lib/StressSolve.so
-%%DATADIR%%/lib/TransportEquation.so
-%%DATADIR%%/lib/elements.def
-%%DATADIR%%/lib/libelmersolver.so
-%%DATADIR%%/lib/DFTSolver.so
-%%DATADIR%%/lib/FlowSolve.so
-%%DATADIR%%/lib/HeatSolve.so
-%%DATADIR%%/lib/MeshSolve.so
-%%DATADIR%%/lib/ShellSolve.so
-@dirrm %%DATADIR%%/lib
-@dirrm %%DATADIR%%/include
-@dirrm %%DATADIR%%
diff --git a/science/pcp/Makefile b/science/pcp/Makefile
deleted file mode 100644
index d59cac11677e..000000000000
--- a/science/pcp/Makefile
+++ /dev/null
@@ -1,22 +0,0 @@
-# New ports collection makefile for: pcp
-# Date created: 2006-07-25
-# Whom: Cheng-Lung Sung <clsung@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME= pcp
-PORTVERSION= 2.2
-CATEGORIES= science math
-MASTER_SITES= SF
-
-MAINTAINER= clsung@FreeBSD.org
-COMMENT= Machine learning program for pattern classification
-
-BROKEN= Does not compile with GCC 4.2
-DEPRECATED= does not compile on FreeBSD 7.x or newer
-EXPIRATION_DATE=2011-04-17
-
-GNU_CONFIGURE= yes
-
-.include <bsd.port.mk>
diff --git a/science/pcp/distinfo b/science/pcp/distinfo
deleted file mode 100644
index 7aafd527a17d..000000000000
--- a/science/pcp/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 (pcp-2.2.tar.gz) = 5be1ace0dbcd07dab47302807fa32c39
-SHA256 (pcp-2.2.tar.gz) = 928f2b7ea40de8ad5568f381a77b9379907a4966a56352cf5945a8664258d95a
-SIZE (pcp-2.2.tar.gz) = 2710238
diff --git a/science/pcp/pkg-descr b/science/pcp/pkg-descr
deleted file mode 100644
index bdb2a46f51cf..000000000000
--- a/science/pcp/pkg-descr
+++ /dev/null
@@ -1,21 +0,0 @@
-PCP (Pattern Classification Program) is an open-source
-machine learning program for supervised classification
-of patterns (vectors of measurements).
-
-PCP implements the following algorithms and methods:
-
-* Fisher's linear discriminant
-* dimensionality reduction using Singular Value Decomposition
-* Principal Component Analysis
-* feature subset selection
-* Bayes error estimation
-* parametric classifiers (linear and quadratic)
-* least-squares (pseudo-inverse) linear discriminant
-* k-Nearest Neighbor (k-NN)
-* neural networks (Multi-Layer Perceptron (MLP))
-* Support Vector Machine (SVM) algorithm
-* SVM, MLP and k-NN model selection
-* cross-validation
-* bagging (committee) classification
-
-WWW: http://pcp.sourceforge.net/
diff --git a/science/pcp/pkg-plist b/science/pcp/pkg-plist
deleted file mode 100644
index 6e125b8814c7..000000000000
--- a/science/pcp/pkg-plist
+++ /dev/null
@@ -1,2 +0,0 @@
-@comment $FreeBSD$
-bin/pcp